EsuBft816_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft816_4a-0001
Unique NameEsuBft816_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_464contigScaffold_464:139194..142606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog55529.EKX47331
ProteomeIdEsuBft816_4
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length148
Hectar predicted targeting categorysignal peptide
Evalue3.27e-06
EggNOG OGs2D651@1|root,2T0RR@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003300.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft816_4aEsuBft816_4aEctocarpus subulatus male Bft15bgeneScaffold_464 139194..142606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft816_4a-0001EsuBft816_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_464 139301..141574 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft816_4a-0001-exonEsuBft816_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_464 139194..139513 +
EsuBft816_4a-0001-exonagat-exon-83867Ectocarpus subulatus male Bft15bexonScaffold_464 140300..140392 +
EsuBft816_4a-0001-exonagat-exon-83868Ectocarpus subulatus male Bft15bexonScaffold_464 141533..142606 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft816_4a-0001-exonagat-five_prime_utr-14119Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_464 139194..139300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft816_4a-0001-cdsEsuBft816_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_464 139301..139513 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft816_4a-0001-exonagat-three_prime_utr-21867Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_464 141575..142606 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft816_4a-0001 ID=EsuBft816_4a-0001|Name=EsuBft816_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1487bp|location=Sequence derived from alignment at Scaffold_464:139194..142606+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTCTTCATCTACCCTCGTTACAACACAAGATCGACCTCTGTTTCCCCTG
TCACCCTCGTTGATAGCACCCGTATCACCCGTACCACGACAACCCTTCAC
AGCTACAATGAAGTTCCTTGGATTCTTCGCGGTGTGCCTCACGGCGGTAT
CAGGATTCGTTGCGCCCACCGGCCCCCGCCTCTCGGCCGCCGTGCGTCCC
TCGACCGCTGCCACACCCATGCGCATGGGCCTCAAGGAGGACGTCCAGAA
GGTCGCCAACGCGGCATCGGTCGCGGTGCTCACCGCCGCGCCTGCCTTGG
CCACTGAGGGGACTGGCGAGCCGCTCGGGTTCGAGAACGCGCAGGCTGTG
GTCGTTCCGCTGTTCTTCCTCGTCAGCATCAACCTGCTGTTCAACAACTG
GGCAAAGGACCAGCCGGAGGGTGACTTCTTCGCCGAATACGACGAGAGGA
GGTAAAACGGCTCGTACGCACTTTGGCTCTTTTTTAGAGAAGTAACCACA
CTGTGCCTGGAGGAGCGGCACGGGGAGTTTGGCGCGTGAACGGGGGAGGG
CTGTCTAACTGCCTCGGGGAGAGCTCCCGTGTTGATGCGCGATCTGCCCT
TGAGTAGGTAGCTTGGGGACACAGGCCAGAAAGGTCGACTGTCTCCGTAC
CCGGCAGCTTGTATTTTTGTCTTTGATGGTAGACTGGCAAATCAAATATT
GTTCTGCAGGGCGGGGGGGGGTGGGCTTGACATGGCTCGTTGGTTGAACT
AGACACGATAACGCCGTGCCACTTTTAAAGAAACCGTACGGTCTTCACCG
TTTTTTCAGCCTCGGCACGGGGTTGCTGGCGGGCCCGTCGGTATATTCGG
CAGTGTTGCCCCTGCGATAACAGCTGTTGGTTGTGTCACATCCTCGCGAT
GATTCGAAGCAGCAGCTTGCAGCATGTTCGATTTTGATGTCGTTTGTTGT
TGACGGCACTGAGTTGCCGTGCCCTTCTCCATTTTTGTTTGTGTTCTTGG
CGTGTGGCCTTTTTTGTTTATTTCGTGGATTCTGGAAAGTGAACATTTCT
CGGAACATGAAACAAGATTCCCTCCCCCTCCCAAGTTTTACGTTTTGGTC
TAACGACCACCTCATGCACGACAATTGAGTACACACACACACACACACAC
CCCTCCAAGTTTTACTTTTTTGTCAACTTATTGATGCCAATCGGGGTTTA
CCCGAAGAGTGCAACAGCGGCTGTACTTCGTCGGTGTCGCCGCAGATATG
TTAAGCATGCAACAACCTGAACCTGCAGAGAAAGTTGATTTCGAGTTGAA
TCGTGCGTGACGGACGGCCGAAAAGTTGAGCTTTTTAAGCTCGAGGCTTC
GCGAGCATCATTTTTTTCACGATTATGAAGCCCAGTGGGTGTTCAGCTCC
CCTTGCGAGTTCAAACGTCGGCGACTTTATTTTCACTCGAGACTTTTGAG
CCCCTGACAATTTCGAGTGGGGTGGATGAAGAGTGTG
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protein sequence of EsuBft816_4a-0001

>EsuBft816_4 ID=EsuBft816_4|Name=EsuBft816_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=115bp
MKFLGFFAVCLTAVSGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVA
NAASVAVLTAAPALATEGTGEPLGFENAQAVVVPLFFLVSINLLFNNWAK
DQPEGDFFAEYDERR
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mRNA from alignment at Scaffold_464:139194..142606+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft816_4a-0001 ID=EsuBft816_4a-0001|Name=EsuBft816_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3413bp|location=Sequence derived from alignment at Scaffold_464:139194..142606+ (Ectocarpus subulatus male Bft15b)
GCTCTTCATCTACCCTCGTTACAACACAAGATCGACCTCTGTTTCCCCTG
TCACCCTCGTTGATAGCACCCGTATCACCCGTACCACGACAACCCTTCAC
AGCTACAATGAAGTTCCTTGGATTCTTCGCGGTGTGCCTCACGGCGGTAT
CAGGATTCGTTGCGCCCACCGGCCCCCGCCTCTCGGCCGCCGTGCGTCCC
TCGACCGCTGCCACACCCATGCGCATGGGCCTCAAGGAGGACGTCCAGAA
GGTCGCCAACGCGGCATCGGTCGCGGTGCTCACCGCCGCGCCTGCCTTGG
CCACTGAGGGGACTGGCGAGGTATGTGGTTCTTTGTGTTGCCTCTTAGAA
GAGAGGAAAGCGAAAATGATCGAAATTGAATGTGCTGTGTTCATGCGGTT
GGTGGGTGAGTCAACGGCACAAGAGGTCGGCTTGAAGCTCGTTCTCCAAA
AACTCGAAAAACTCGTCAGGTTCTTGATTGGTTCGGGGGTCGGCGTGTGT
ACAGGTTGGTGGGTCACCAGCATCAGGCAGGCGCCCTGGAGTTTGACTCA
CCGTCGTTTTAAAATGCGCCTCAAGCAGCAGTTCACGTGTCGATGCACCG
TCTCTGCCCAGCATCCGCTTGTACTGAAAAGTACTTCAATTTAGAGGGGG
GATGGTTGAGCATGTTTTTCCCCACAACCGCCGCATGTGACGCGATTTCA
TATCTCTCACATTTATGTATTGATCATTGTATGCATAGCTGGAAGCGTGG
AAGGAATGACGCGTGTTGGCCTGCCGCTACTGTCGCCACTCCACAAATGA
AGATGTGTCCAGGAGTGTGTCGGTCGCATATGACATGTTTTTGGTCTGGT
GGATAAATGCCTTCTGCATAAACGCCTGTTGCCGAAAGCCTTCCGCTGGA
CGCCTGTTGCCCTTTACTGCTGCACACATAACTGCACTGCACCCGTCCGT
GCCTCTTCCATCATCTGTAGTTTCTCTGGGCCCTCCCCTTCCCCCCACGC
GCCCACCCTGTATCTGCTGTGTGTTGCTTCCCCCCCTGATGATGCTTCCT
GCTGTTTTGGCGGGGCGACGGCTGACTGGTACACAACAACCAATCTCTCT
CTCCAGCCGCTCGGGTTCGAGAACGCGCAGGCTGTGGTCGTTCCGCTGTT
CTTCCTCGTCAGCATCAACCTGCTGTTCAACAACTGGGCAAAGGACCAGG
TGAGGAATCTAGATACTCCCGTCTAGCGGGAAGCGGTGCTAAGCGGTTCA
TAGTGTATCTCATGCATACACATGCTGTTTTATGTGCACGGTGCGCGAGG
GGAGAGTTGAAACGGCAACAAAAATATGGTCTCACGTTGACTTCTGTAGG
CAGTTGCAAACAACCGCAGAGGCGCCCGCACACAATGCCGTATCTAGAGT
GCATTGGTGGCCGTCATTGTGATCGGAGGGTAGAATATACAGCAGTGGTG
TGTGTCTCTCTCTCTCTGACAAGAGAGCTGCCTGCTTGTTCCCCGAGTGC
GTACAAAATCCCCGAGACCCTTTTGTGTCAGCTACCACATCATTGCCGGC
GTACTTCGTACATGATACTGCACTCACACCTCCGAACGAGGATAGGGTGT
CGCTGACGCAGCCACGCGAGTGTTCATGTCATACCGAGTACATCTAGGTT
CGCCTGTTCTTTGTCCCGCCTTTAGAAGCCTTGTATGTAGGCGCGAGGCA
GGTGCTTCATGTGGCAAAATATTACTGCTGATGGAGGGCGCGTCGGGTAT
CGTTGAATTGTGCACAGACCGAATGCTAAGCATGTCCTGTAGCGTGTTAT
AGTCTGAATCTTGTACTGCGTTTCTAAAAACGTGAAAATGTCCTGAGGAA
ATGTTGTATACGGTTTTCACCCAAGAACAATCGCATTGAACCAAGGCTTC
TCATCACACCCAGTTCTTGTTCGCTCAAAGAAAAGTCTCAAAAGCGTTGG
TGTGGGTCTAATAACCTTGCTGCGCCAAGCGGGTTAACCTCTGTGTTATT
GTCGAGTAATTACGCACCTGATTAATCACGGTTTGTGTCTCTGCTATCCC
CGCAGTCTCGTACTAAAGTACAGCGCTACGTGACTGCCGAGGTCCGAGAT
CACTCGCATAAGACCTCAAGTTACCCTTTGCGTATGCATCAAGCCATGCT
GTTGAGCGAACGCCGGGTTGTTGCACAACCGGAGTTTTGGCGCAGCTTTT
CTCACAAACCGCAAACAGCACGATGTCACTGCAACCGCACGCACTACCCG
CAGAACGCTACCAGTTACTTGTCCCAACAGTTCTCTGCGTCTCACCATTT
TTTTTTTTCCGTCTCTGCCGGTTGTTTGCCTCTTTGCAGCCGGAGGGTGA
CTTCTTCGCCGAATACGACGAGAGGAGGTAAAACGGCTCGTACGCACTTT
GGCTCTTTTTTAGAGAAGTAACCACACTGTGCCTGGAGGAGCGGCACGGG
GAGTTTGGCGCGTGAACGGGGGAGGGCTGTCTAACTGCCTCGGGGAGAGC
TCCCGTGTTGATGCGCGATCTGCCCTTGAGTAGGTAGCTTGGGGACACAG
GCCAGAAAGGTCGACTGTCTCCGTACCCGGCAGCTTGTATTTTTGTCTTT
GATGGTAGACTGGCAAATCAAATATTGTTCTGCAGGGCGGGGGGGGGTGG
GCTTGACATGGCTCGTTGGTTGAACTAGACACGATAACGCCGTGCCACTT
TTAAAGAAACCGTACGGTCTTCACCGTTTTTTCAGCCTCGGCACGGGGTT
GCTGGCGGGCCCGTCGGTATATTCGGCAGTGTTGCCCCTGCGATAACAGC
TGTTGGTTGTGTCACATCCTCGCGATGATTCGAAGCAGCAGCTTGCAGCA
TGTTCGATTTTGATGTCGTTTGTTGTTGACGGCACTGAGTTGCCGTGCCC
TTCTCCATTTTTGTTTGTGTTCTTGGCGTGTGGCCTTTTTTGTTTATTTC
GTGGATTCTGGAAAGTGAACATTTCTCGGAACATGAAACAAGATTCCCTC
CCCCTCCCAAGTTTTACGTTTTGGTCTAACGACCACCTCATGCACGACAA
TTGAGTACACACACACACACACACACCCCTCCAAGTTTTACTTTTTTGTC
AACTTATTGATGCCAATCGGGGTTTACCCGAAGAGTGCAACAGCGGCTGT
ACTTCGTCGGTGTCGCCGCAGATATGTTAAGCATGCAACAACCTGAACCT
GCAGAGAAAGTTGATTTCGAGTTGAATCGTGCGTGACGGACGGCCGAAAA
GTTGAGCTTTTTAAGCTCGAGGCTTCGCGAGCATCATTTTTTTCACGATT
ATGAAGCCCAGTGGGTGTTCAGCTCCCCTTGCGAGTTCAAACGTCGGCGA
CTTTATTTTCACTCGAGACTTTTGAGCCCCTGACAATTTCGAGTGGGGTG
GATGAAGAGTGTG
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Coding sequence (CDS) from alignment at Scaffold_464:139194..142606+

>EsuBft816_4a-0001 ID=EsuBft816_4a-0001|Name=EsuBft816_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=348bp|location=Sequence derived from alignment at Scaffold_464:139194..142606+ (Ectocarpus subulatus male Bft15b)
ATGAAGTTCCTTGGATTCTTCGCGGTGTGCCTCACGGCGGTATCAGGATT
CGTTGCGCCCACCGGCCCCCGCCTCTCGGCCGCCGTGCGTCCCTCGACCG
CTGCCACACCCATGCGCATGGGCCTCAAGGAGGACGTCCAGAAGGTCGCC
AACGCGGCATCGGTCGCGGTGCTCACCGCCGCGCCTGCCTTGGCCACTGA
GGGGACTGGCGAGCCGCTCGGGTTCGAGAACGCGCAGGCTGTGGTCGTTC
CGCTGTTCTTCCTCGTCAGCATCAACCTGCTGTTCAACAACTGGGCAAAG
GACCAGCCGGAGGGTGACTTCTTCGCCGAATACGACGAGAGGAGGTAA
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