EsuBft816_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft816_3a-0001
Unique Name	EsuBft816_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_464	contig	Scaffold_464:143594..146376 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	3218.PP1S465_19V6.1
ProteomeId	EsuBft816_3
Protein domains	PTHR22844
Protein domains	IPR017986
Protein domains	IPR015943
Protein domains	IPR001680
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	33090\|Viridiplantae
Length	178
Hectar predicted targeting category	other localisation
Evalue	1.91e-49
EggNOG OGs	KOG0274@1\|root,KOG0274@2759\|Eukaryota,37V1D@33090\|Viridiplantae
Ec32 ortholog description	WD40-repeat-containing domain
Ec32 ortholog	Ec-11_003280.1
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K10260
KEGG Pathway	ko04120,map04120
KEGG Module	M00387
Description	WD domain, G-beta repeat
COG category	S
BRITE	ko00000,ko00001,ko00002,ko04121,ko04131

Cross References

External references for this mRNA


Database	Accession
GO	0031227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft816_3a	EsuBft816_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_464 143594..146376 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft816_3a-0001-exon	EsuBft816_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_464 143594..144886 -
EsuBft816_3a-0001-exon	agat-exon-83866	Ectocarpus subulatus male Bft15b	exon	Scaffold_464 145885..146376 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft816_3a-0001-cds	EsuBft816_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_464 143594..144886 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft816_3a-0001	EsuBft816_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_464 143594..146376 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_464:143594..146376-
coding sequence from alignment at Scaffold_464:143594..146376-

spliced messenger RNA

>EsuBft816_3a-0001 ID=EsuBft816_3a-0001|Name=EsuBft816_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1785bp|location=Sequence derived from alignment at Scaffold_464:143594..146376- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCTGGCCAAGCGCAACAGTGAGGCGGCGGCGAAGTGGGCAGCGAA
ACGCCGCGAGTCCCAGGAACGAGCGCTGCTGCAAGAGCGATCCTTATCGT
CGTCGATTTCGCGAAGAACACCAGCATGCGGTGAAACACAGCCGCCGCCT
AGGAATGCGGCATCAACATCACACGGAGCTAACGCCGCGTACATGGAAGA
TTTCCGAAAAGGCATGGCCGATATGTGCCTGGCCCTGGAAGGGCCAGGTG
GCACCAAAGCGAATCTCGGCCCTTCCGCGGCTGTCGGCCGTAGGCAATAC
CAGAGCCAGTACGGTAAGAGCCCCCAAGAGAGGATCAACCATCGAGAGCC
CCAGGGACGAGCAGATCGCTTTGGCGGTTCTGCCGTAATGGGTGGTTTCC
TCGGCAGCAAGCTGAAAGAAGGTTGGACGACGGGTGGTGGTGTCGCCGTC
GCAAGCGGCTGGCGCCAAGGCCCGTTGGATGCCGCAGGACAGCTCCTGGA
CCTGAGCGATCGCAACCTTCTCTGCTTGAGCGTGCGGGGCGACGAGGCGG
TGTTCGGGAGCGCGGACCACTCCCTGTACTGTGTGGACCTGTCGCGGGGG
ATCACCACGCGCCAGCTCTACGGCTCTCGATCCAAGCCCGACGCAGGCCA
CAAGGAGTGGGTCTCGGTCGTGTGCCACACAGCCCAGGGAGACATCGCCT
CCGGAGGCATCGACGGCAAGCTCTGCCTCTGGCGCCGCGGAGGAGGAGGA
GGAGGAGGAGGAGGTGGTGGAAACCCGGGGGAGGTCCAGGCCCACGCGGG
CTCGATCTCGGCGATGAAAGCGGACGAAGAGGGGAGGGTTGCGACCAGTG
GGTACGGGGGCGCGGTGCGACTGTGGGACTGCAGGAGGAGCGGCGGCCGG
GGCGGGGCGCCGCCGCGGTTGTCCGGCGAGCTCTCCGACGGCGGCCTTCC
CGCCCCGTGCATGGACTTTTCCTGGTCGTCCTACGGACGGCGAGCGGTGG
TGATGACGGGGCACCGCGACGGCCGAGTCGGGTTCTTCGACGCCGAGACG
AGCGCGATTGTCGCCGGCGGCCGTAAGGGCGGGGCCCACCGAGGGCACGT
GACGGTAGTCGAGGCGCTCGACAACATGACGGGCGTTACCGGCTCCTGCT
TCGCGACCGGAGGGCAGGATGGCTTCGTGCGCATCTGGGACCCACGAGCC
GGGGAAATGGAGGGAAGGGGAGGTACCTCGGCGGGTGCAGGGCCAGTGTT
AGAGGCACCCGCTCACCGAGGCCCGGAAGGGGTGGGCGCGGTCGGCGGGC
TCATGGTTGCCGGGTCCGGAGGTAATCGCCTGGCGTCCTTCGGTGCCGAC
AGGCGGGTGTGCGTTCTCGAGGTTCGAGGGGGAAGAAGCGGCGGCGGTGA
TGATGGTAGGCGTAATCGGGAGCAGTCTTCGTCGTTGGCCATCGAGCACG
CCTTTGATGAACACCGAGACTTCATATACTGCATGGATTTCGTACCCGTG
GGCAGTGGGGCCGCAAGAGCGGGTAGTGGCGGTGATGTTCTCGTGACGGG
GGGAGGCGACGGCATGTTGCTCGTTCATGATCTCGACTCGATGCGTCTAT
TGTACGGCCTCGGCTGCTGCAGCGCCGGGGCAGTGCGTTGCGTCGTGGCT
AGAGAAAACACGCTAACGGTTGCAGGAGACGACGGCAACGCCATGCTGTA
TTCGTTCGGAAGGGACACTCGGGGAGAAGAAAGTAGATCGGAAAAGTCAA
CGAGTCCGACTAGACCAAGTGCCGGCCGTACGTGA

protein sequence of EsuBft816_3a-0001

>EsuBft816_3 ID=EsuBft816_3|Name=EsuBft816_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=594bp
MSLAKRNSEAAAKWAAKRRESQERALLQERSLSSSISRRTPACGETQPPP
RNAASTSHGANAAYMEDFRKGMADMCLALEGPGGTKANLGPSAAVGRRQY
QSQYGKSPQERINHREPQGRADRFGGSAVMGGFLGSKLKEGWTTGGGVAV
ASGWRQGPLDAAGQLLDLSDRNLLCLSVRGDEAVFGSADHSLYCVDLSRG
ITTRQLYGSRSKPDAGHKEWVSVVCHTAQGDIASGGIDGKLCLWRRGGGG
GGGGGGGNPGEVQAHAGSISAMKADEEGRVATSGYGGAVRLWDCRRSGGR
GGAPPRLSGELSDGGLPAPCMDFSWSSYGRRAVVMTGHRDGRVGFFDAET
SAIVAGGRKGGAHRGHVTVVEALDNMTGVTGSCFATGGQDGFVRIWDPRA
GEMEGRGGTSAGAGPVLEAPAHRGPEGVGAVGGLMVAGSGGNRLASFGAD
RRVCVLEVRGGRSGGGDDGRRNREQSSSLAIEHAFDEHRDFIYCMDFVPV
GSGAARAGSGGDVLVTGGGDGMLLVHDLDSMRLLYGLGCCSAGAVRCVVA
RENTLTVAGDDGNAMLYSFGRDTRGEESRSEKSTSPTRPSAGRT

mRNA from alignment at Scaffold_464:143594..146376-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft816_3a-0001 ID=EsuBft816_3a-0001|Name=EsuBft816_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2783bp|location=Sequence derived from alignment at Scaffold_464:143594..146376- (Ectocarpus subulatus male Bft15b)
ATGAGCCTGGCCAAGCGCAACAGTGAGGCGGCGGCGAAGTGGGCAGCGAA
ACGCCGCGAGTCCCAGGAACGAGCGCTGCTGCAAGAGCGATCCTTATCGT
CGTCGATTTCGCGAAGAACACCAGCATGCGGTGAAACACAGCCGCCGCCT
AGGAATGCGGCATCAACATCACACGGAGCTAACGCCGCGTACATGGAAGA
TTTCCGAAAAGGCATGGCCGATATGTGCCTGGCCCTGGAAGGGCCAGGTG
GCACCAAAGCGAATCTCGGCCCTTCCGCGGCTGTCGGCCGTAGGCAATAC
CAGAGCCAGTACGGTAAGAGCCCCCAAGAGAGGATCAACCATCGAGAGCC
CCAGGGACGAGCAGATCGCTTTGGCGGTTCTGCCGTAATGGGTGGTTTCC
TCGGCAGCAAGCTGAAAGAAGGTTGGACGACGGGTGGTGGTGTCGCCGTC
GCAAGCGGCTGGCGCCAAGGCCCGTTGGATGCCGCAGGACAGGTGTGTTG
ATTAGCCCCAAGCCGAGTGCTGCTGGATCAGCACGGCTGTCCCGGTTGAC
AATGTGAAGCGACAGCAAAGTCGTTTTATTGGTTGTCCTCGTAGACACAA
GCAACGGAATAGAGTGGGCACCAGGGTGCATCACAAACACCGGGGCACGC
GAGCAACAGTCGCAAGACACATTCGGAACTCGGAACACATGACAGCACGG
AACGCCAACTTGCCAAAGATACACTACCGGAGATACCCCTAAGATCCAAC
TGACCGATGGACGGCCACGTACTTGCGCACTGACATAGCTCCAAACCACA
CATGAGTACTACCGTAGTAGCCTTCAGAAGGGTGGCATAATCCGCCTCAC
GAACAAGGCGAGCTACATATGGTACGGCGTCTGTACAGCAGTATGCCTCT
CGACAGATGTAGTACGTAGTAGCTGGAAGAGGGGGATCACCTAAAGGGTT
CGTCGATACGTTGTTACCTTTTGAGCAATCCCGTCGACCGATCACTCATA
ACTTCATCGGGACAATTACGCTCGAATTGATCAGGCTTGATCAATGTCGA
AGTGTAGACTACACCTTGCAGCTTGGTGGTGAATGTCGTCGTCGCAGCAG
AATACTTCACGACAGCATGCCGTTCACATTGAACGTTGTTGTGTGCTCGT
TTGATACGCGAAAAACCACTGAAATGGTCGATAGGACGTCAACTCTCCCA
TTGTTGAGCTGTTTCGCTCACACCGAGTTTTTGAGTAGGCGGTGTACCGG
GCAGGAGGTGATCGGCAAGTTACATATACCGGTGGTGGCTGTCAGTGGTC
CCCACGCCTGGAGTATGCCAACACGATTCCCTCCATCGCACGCACCAGAT
GCAACAAACAACTCGCACCCTTCTCACACGAACCTGTGGCATCCATGAAG
ATAAAACTGTTCGACTTTCCACGCACACATACCTACCTCATGATCTTGCG
GCGGCGGTGGTTGTTGTCTCTATTCTCTGCCACACGACAGCTCCTGGACC
TGAGCGATCGCAACCTTCTCTGCTTGAGCGTGCGGGGCGACGAGGCGGTG
TTCGGGAGCGCGGACCACTCCCTGTACTGTGTGGACCTGTCGCGGGGGAT
CACCACGCGCCAGCTCTACGGCTCTCGATCCAAGCCCGACGCAGGCCACA
AGGAGTGGGTCTCGGTCGTGTGCCACACAGCCCAGGGAGACATCGCCTCC
GGAGGCATCGACGGCAAGCTCTGCCTCTGGCGCCGCGGAGGAGGAGGAGG
AGGAGGAGGAGGTGGTGGAAACCCGGGGGAGGTCCAGGCCCACGCGGGCT
CGATCTCGGCGATGAAAGCGGACGAAGAGGGGAGGGTTGCGACCAGTGGG
TACGGGGGCGCGGTGCGACTGTGGGACTGCAGGAGGAGCGGCGGCCGGGG
CGGGGCGCCGCCGCGGTTGTCCGGCGAGCTCTCCGACGGCGGCCTTCCCG
CCCCGTGCATGGACTTTTCCTGGTCGTCCTACGGACGGCGAGCGGTGGTG
ATGACGGGGCACCGCGACGGCCGAGTCGGGTTCTTCGACGCCGAGACGAG
CGCGATTGTCGCCGGCGGCCGTAAGGGCGGGGCCCACCGAGGGCACGTGA
CGGTAGTCGAGGCGCTCGACAACATGACGGGCGTTACCGGCTCCTGCTTC
GCGACCGGAGGGCAGGATGGCTTCGTGCGCATCTGGGACCCACGAGCCGG
GGAAATGGAGGGAAGGGGAGGTACCTCGGCGGGTGCAGGGCCAGTGTTAG
AGGCACCCGCTCACCGAGGCCCGGAAGGGGTGGGCGCGGTCGGCGGGCTC
ATGGTTGCCGGGTCCGGAGGTAATCGCCTGGCGTCCTTCGGTGCCGACAG
GCGGGTGTGCGTTCTCGAGGTTCGAGGGGGAAGAAGCGGCGGCGGTGATG
ATGGTAGGCGTAATCGGGAGCAGTCTTCGTCGTTGGCCATCGAGCACGCC
TTTGATGAACACCGAGACTTCATATACTGCATGGATTTCGTACCCGTGGG
CAGTGGGGCCGCAAGAGCGGGTAGTGGCGGTGATGTTCTCGTGACGGGGG
GAGGCGACGGCATGTTGCTCGTTCATGATCTCGACTCGATGCGTCTATTG
TACGGCCTCGGCTGCTGCAGCGCCGGGGCAGTGCGTTGCGTCGTGGCTAG
AGAAAACACGCTAACGGTTGCAGGAGACGACGGCAACGCCATGCTGTATT
CGTTCGGAAGGGACACTCGGGGAGAAGAAAGTAGATCGGAAAAGTCAACG
AGTCCGACTAGACCAAGTGCCGGCCGTACGTGA

Coding sequence (CDS) from alignment at Scaffold_464:143594..146376-

>EsuBft816_3a-0001 ID=EsuBft816_3a-0001|Name=EsuBft816_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1785bp|location=Sequence derived from alignment at Scaffold_464:143594..146376- (Ectocarpus subulatus male Bft15b)
ATGAGCCTGGCCAAGCGCAACAGTGAGGCGGCGGCGAAGTGGGCAGCGAA
ACGCCGCGAGTCCCAGGAACGAGCGCTGCTGCAAGAGCGATCCTTATCGT
CGTCGATTTCGCGAAGAACACCAGCATGCGGTGAAACACAGCCGCCGCCT
AGGAATGCGGCATCAACATCACACGGAGCTAACGCCGCGTACATGGAAGA
TTTCCGAAAAGGCATGGCCGATATGTGCCTGGCCCTGGAAGGGCCAGGTG
GCACCAAAGCGAATCTCGGCCCTTCCGCGGCTGTCGGCCGTAGGCAATAC
CAGAGCCAGTACGGTAAGAGCCCCCAAGAGAGGATCAACCATCGAGAGCC
CCAGGGACGAGCAGATCGCTTTGGCGGTTCTGCCGTAATGGGTGGTTTCC
TCGGCAGCAAGCTGAAAGAAGGTTGGACGACGGGTGGTGGTGTCGCCGTC
GCAAGCGGCTGGCGCCAAGGCCCGTTGGATGCCGCAGGACAGCTCCTGGA
CCTGAGCGATCGCAACCTTCTCTGCTTGAGCGTGCGGGGCGACGAGGCGG
TGTTCGGGAGCGCGGACCACTCCCTGTACTGTGTGGACCTGTCGCGGGGG
ATCACCACGCGCCAGCTCTACGGCTCTCGATCCAAGCCCGACGCAGGCCA
CAAGGAGTGGGTCTCGGTCGTGTGCCACACAGCCCAGGGAGACATCGCCT
CCGGAGGCATCGACGGCAAGCTCTGCCTCTGGCGCCGCGGAGGAGGAGGA
GGAGGAGGAGGAGGTGGTGGAAACCCGGGGGAGGTCCAGGCCCACGCGGG
CTCGATCTCGGCGATGAAAGCGGACGAAGAGGGGAGGGTTGCGACCAGTG
GGTACGGGGGCGCGGTGCGACTGTGGGACTGCAGGAGGAGCGGCGGCCGG
GGCGGGGCGCCGCCGCGGTTGTCCGGCGAGCTCTCCGACGGCGGCCTTCC
CGCCCCGTGCATGGACTTTTCCTGGTCGTCCTACGGACGGCGAGCGGTGG
TGATGACGGGGCACCGCGACGGCCGAGTCGGGTTCTTCGACGCCGAGACG
AGCGCGATTGTCGCCGGCGGCCGTAAGGGCGGGGCCCACCGAGGGCACGT
GACGGTAGTCGAGGCGCTCGACAACATGACGGGCGTTACCGGCTCCTGCT
TCGCGACCGGAGGGCAGGATGGCTTCGTGCGCATCTGGGACCCACGAGCC
GGGGAAATGGAGGGAAGGGGAGGTACCTCGGCGGGTGCAGGGCCAGTGTT
AGAGGCACCCGCTCACCGAGGCCCGGAAGGGGTGGGCGCGGTCGGCGGGC
TCATGGTTGCCGGGTCCGGAGGTAATCGCCTGGCGTCCTTCGGTGCCGAC
AGGCGGGTGTGCGTTCTCGAGGTTCGAGGGGGAAGAAGCGGCGGCGGTGA
TGATGGTAGGCGTAATCGGGAGCAGTCTTCGTCGTTGGCCATCGAGCACG
CCTTTGATGAACACCGAGACTTCATATACTGCATGGATTTCGTACCCGTG
GGCAGTGGGGCCGCAAGAGCGGGTAGTGGCGGTGATGTTCTCGTGACGGG
GGGAGGCGACGGCATGTTGCTCGTTCATGATCTCGACTCGATGCGTCTAT
TGTACGGCCTCGGCTGCTGCAGCGCCGGGGCAGTGCGTTGCGTCGTGGCT
AGAGAAAACACGCTAACGGTTGCAGGAGACGACGGCAACGCCATGCTGTA
TTCGTTCGGAAGGGACACTCGGGGAGAAGAAAGTAGATCGGAAAAGTCAA
CGAGTCCGACTAGACCAAGTGCCGGCCGTACGTGA