EsuBft816_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft816_2a-0001
Unique NameEsuBft816_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_464contigScaffold_464:146591..152706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
SymbolODC
StatusManually annotated
Seed ortholog2880.D7G2S0
ProteomeIdEsuBft816_2
Protein domainsPTHR11482
Protein domainsIPR002433
Protein domainsIPR000183
Protein domainsIPR029066
Protein domainsIPR022644
Ownerapollo_admin@sb-roscoff.fr
Noteornithine decarboxylase os:schizosaccharomyces pombe (strain 972 atcc 24843) gn:spe1 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length771
Hectar predicted targeting categoryother localisation
Evalue2.1e-134
EggNOG OGsCOG0019@1|root,KOG0622@2759|Eukaryota
Date last modified2016-09-19
Date creation2016-06-14
KEGG rclassRC00299
KEGG koko:K01581,ko:K03843
KEGG ReactionR00670,R05973,R06238
KEGG Pathwayko00330,ko00480,ko00510,ko00513,ko01100,ko01110,ko01130,map00330,map00480,map00510,map00513,map01100,map01110,map01130
KEGG ModuleM00055,M00134
GOsGO:0003674,GO:0003824,GO:0004586,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006576,GO:0006591,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009308,GO:0009309,GO:0009445,GO:0009446,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0033387,GO:0034641,GO:0042401,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576,GO:1901605
EC2.4.1.132,2.4.1.257,4.1.1.17
DescriptionOrnithine decarbolylase
Descriptionputrescine biosynthetic process from ornithine
COG categoryE
CAZyGT4
BRITEko00000,ko00001,ko00002,ko01000,ko01003
NoteAvia K., annotator
Cross References
External references for this mRNA
DatabaseAccession
GO0009615
GO0006521
GO0009446
GO0005829
GO0004586
GO0048471
EC4.1.1.17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft816_2aEsuBft816_2aEctocarpus subulatus male Bft15bgeneScaffold_464 146591..152706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft816_2a-0001EsuBft816_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_464 146705..152706 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft816_2a-0001-exonagat-exon-83863Ectocarpus subulatus male Bft15bexonScaffold_464 146591..146911 +
EsuBft816_2a-0001-exonagat-exon-83865Ectocarpus subulatus male Bft15bexonScaffold_464 151135..151288 +
EsuBft816_2a-0001-exonagat-exon-83864Ectocarpus subulatus male Bft15bexonScaffold_464 151683..151862 +
EsuBft816_2a-0001-exonEsuBft816_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_464 152316..152392 +
EsuBft816_2a-0001-exonagat-exon-83862Ectocarpus subulatus male Bft15bexonScaffold_464 152668..152706 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft816_2a-0001-exonagat-five_prime_utr-14118Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_464 146591..146704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft816_2a-0001-cdsEsuBft816_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_464 146705..146911 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft816_2a-0001 ID=EsuBft816_2a-0001|Name=EsuBft816_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=771bp|location=Sequence derived from alignment at Scaffold_464:146591..152706+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCTTCACATACGCTAGCCAGCGCACACACCTGGCTGAGCTAGGCCTGCT
GACTTCGATTCTGTTGGACGTCCCCGTTTGCATGGCTTCGGGGCCATCAA
GATAGCTTTTGTTCATGGCCATGGAGCCCCCGACATCCGCAGCAAAGCTG
CTCCTAGATACGCAATTGGACCGAGCTGTGGACTTCACCGCCCTCTCCAT
GCTGCCCAATGTTGCTGACGGGGGCAGCACGGCGGACGTTTCCAGTAGAC
GCTTGCCTCGGGTACCAGTCGCTGGATCTAAGGACTGGCTGCCGAGCATG
GTTGAAGTCGGCCGGCAAGAAGCACATCTTCGAGATACAGCGGACGAGAG
TACGGGCGATGACTTGGACGGTGGTAGTGCTTCCTCCGACGTCTTTTTCG
CCGTAGACGTCGAGTGCGTGCTGCACAAGTACCGGAGATGGCACGACTGC
TTTCCTCGTGTCAAACCTTTCTACGCGGTGAAGTGCAACCCTAACTCCGA
GGTGGTGCGCGTGCTTGCGGCCACCCCCGGGTGCGGGTTTGACTGCGCTA
GTCCCGCCGAGATGGACCAGGTGCTCGAGTGCGGTGTGGACCCCTCTCGC
ATCATCTACGCTAATCCCTGTAAGGACTTGGCCGCGCTGGAGCACGCGTT
ATCAGCTGGTGTCGCGACGATGACGTTCGATAGCAAGGACGAGCTGTACA
AGATTAGACGGCTACTTGACTCTCGGGCAAAGGCGCTCGGGGCGAAAGCG
CTCGGAGAAAGAGCGGTTTAG
back to top

protein sequence of EsuBft816_2a-0001

>EsuBft816_2 ID=EsuBft816_2|Name=EsuBft816_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=218bp
MAMEPPTSAAKLLLDTQLDRAVDFTALSMLPNVADGGSTADVSSRRLPRV
PVAGSKDWLPSMVEVGRQEAHLRDTADESTGDDLDGGSASSDVFFAVDVE
CVLHKYRRWHDCFPRVKPFYAVKCNPNSEVVRVLAATPGCGFDCASPAEM
DQVLECGVDPSRIIYANPCKDLAALEHALSAGVATMTFDSKDELYKIRRL
LDSRAKALGAKALGERAV
back to top

mRNA from alignment at Scaffold_464:146591..152706+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft816_2a-0001 ID=EsuBft816_2a-0001|Name=EsuBft816_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6116bp|location=Sequence derived from alignment at Scaffold_464:146591..152706+ (Ectocarpus subulatus male Bft15b)
CCCTTCACATACGCTAGCCAGCGCACACACCTGGCTGAGCTAGGCCTGCT
GACTTCGATTCTGTTGGACGTCCCCGTTTGCATGGCTTCGGGGCCATCAA
GATAGCTTTTGTTCATGGCCATGGAGCCCCCGACATCCGCAGCAAAGCTG
CTCCTAGATACGCAATTGGACCGAGCTGTGGACTTCACCGCCCTCTCCAT
GCTGCCCAATGTTGCTGACGGGGGCAGCACGGCGGACGTTTCCAGTAGAC
GCTTGCCTCGGGTACCAGTCGCTGGATCTAAGGACTGGCTGCCGAGCATG
GTTGAAGTCGGCCGGCAAGAAGTAAGTAAGGTAGCCCTCGCGTGTGTGCC
ACGGTGTTCATGATGATATGATAATCCTGTTGAACATCAACCGTGGAACC
ACACCAACACCATTGCCTGCGACTCGTGTGGCACAAGGTGGTGTTCTTCG
ACTCTAGCAGTGGTGTTAGGCCCAGTTTTGGGCTGTATCACAGAGATATC
CTGCAATTCTTGTGCGCGTAGTCTACTCTGTAGCCCGCCAACACCGCCAA
AAGGCTACAGAAGGTCCGTTTTACGATCAGAACCCAGATTTTAGGGATTG
AAAACACGGAACACAAACGACAACAACTGGCGCTTGTTCTACATATTCGT
CATGGCATCGCAAGAAAAGGGCTCCGTCGCTGAATGCATGCTTTGCTCGA
CATACAACAGGTTGACTTGGTTTTGCTCACCATAAGCAGCGGTAAAAGCG
CAAAGGGCAGCACCCGACACAGGTCAGCACACTTGTAAAGACCAGGTCCA
CCCGGTCTGTTGTTTTCAGCAACAGGCGGAGGGTCGATTGTCGCAACCTG
GGCGTTGCTCAAGTGTTGCTTGCAATTTCTTAGTTGGCCGGCTCATTTTC
ACCGCTGCCACCCCCTTCTTTGACCACAACCTGTCGATCGACAGGCAGAC
GACCTTAACAATTATGGGGCGGCAGCGGCGCTGAGAGCCAGCATCATACA
CATGACCAATCTGAAAGAACAAGCTTGTTATGAGGCCCTGTTGCTCTGCT
GCTGCGTGGTGCCGTGGATTTGTGTTGCCGTCTCCGACAAAAAACAGACC
ATCTCACCCCATTTTTTCAAACGGCAGTTTGGCGAGGTTGCACACATCTC
TATCACGCCTTCTTGGAGTAGCGCGCGAGCCCCGAATGCCCACGAAGCAG
TACAGCGCCGGGAGTGAGCATCATTTAGACAGCCGAACCGAAGGAATTGG
CGCTGGTAAACCTGTTCTGTGGTTCCCGTGTTTGTCATGTGTACTCTTTA
TGTTTTGCATGCCTCAGCGGTTAGACCATTGACCATGCATCCTCGAGAGG
ACGGAGCATTGTTCCCACAGGACCGATCACCGATGGCCAATCGTTCCTTT
CTACTTGGCCAAAGGTGGCTCAAAAATGTCTTCCCAAGTCTGTCTATCCT
AACGATATCCCTTCCCGCCTTTTCAACTCACCTCCTAAACCCCAGTACAG
CTACCGTCCTTTCCTCTCTATTCCATGCCTCAAACATCTCCCTGTACGTC
CCATCTATTGTTCCCAGCTCAGTCACGTACACTTCCCTCTCCTTCTTGTA
CAACGGACATTCCGCGACTACATGAACACGGTCTTCGCATTCGAAGCCGC
AATCACATTTGAACTCGTCGTCTTCGTCGTCTACAGTCCTATGTCTTCGT
CGACGTTCTCGAAGGCCTATGTCCCCGGTCCTGAATTTGACCTTAAGCTT
TGTTCCTGCATCCATTGGTCCATGTAGGTAGTCCTTGAACTCTATTCCTT
CCTTCAACATTCCGTACACTTCTAGACCCTCCTCATCCTTGGATTCTTTC
CTTAGATTCTGTTCTTCTCTCTCGGCACAAGCAACATATATCTTCTCCTT
GGACCCCTGTAGACCCTCCGTTTCCAGCGTTTCATCTTCGTCGATGTCGA
GCCCCTTCCATACGTCCTCTACAACCTTGACCCATTCCGTGGGTTGTCTA
CCCCTCTTTTTGTTTGCCCACTTCGCCTCCCATACAATTCTCGGCAACCT
CTCCTCTCCCATCCCGCACATGCGATACTGCCAGGTCAGCTTCCTCGCGT
CTCTTCCCGACCGTAGGGATTGGATCCCCAATTCTGCCCTCACGGCTGCA
TTACTTGTGCGCCTGGAGCATCCTAGGATGGTTTTCGCTGCTTTCATCTG
CGCCGCCTCGAGTTCTTTCACTACCTTCTTATTTCCTTCCCATACTTCTC
CGACGTACTCCAGCGGCTGTACGACTACGCTCTTCAAAACCGTCAATTTG
ATGCGTGTATCGAGGTGCCGCANCCGCCTCGAGTTCTTTCACTACCTTCT
TATTTCCTTCCCATACTTCTCCGACGTACTCCAGCGGCTGTACGACTACG
CTCTTCAAAACCGTCAATTTGATGCGTGTATCGAGGTGCCGCGTTTGCGA
GTATTGGGTGCAGCTTCCCTGCTCGTGCTTTGCCCTTTTCCGCTACCTTG
GACATGTGTGCATTCCAAGAGCCGTCTTTTGCGATCTCTACTCCGAGGTA
TGTGTACTGGTCCACTACTGCAATCTCCTCGATCCCCCACTTCCATCTAT
GTTCTACTGGTTCCTCCTTGTTCTCGTTGCATACCATGACGGCACTCTTC
TGAACGTTGGCAGACAATCTCCACTTATCAGTAAACTTCTTCGTTTGTCA
TGTGTGGTGGAGAAAAAAAACGAGCATCAACAGCAGCAGTTCAAGACGAT
AGGGCCATCCAATGTCTCGGTTTTGACCCAAGAACGGCCTGAACCCGGCT
TCTGCCGCTGGATTATGCCCGCAATAGACCTGGACGTGAGTCTGGCTGGC
CTTGCTAGCCTTCTCAGTGACGTTACAGCGCCCGCGGTGCGCCTGCCCGA
TCCTTCTGATCGGTGAAAGGAGCACGCAGTTTTTCTTTTCCCTTGCTGTG
TTGAGAGTAGATGTACCAATTAAGAGACACCCCCCATTAAGAGACACATT
TTTTCAAATGCACATATCTCCGCGCACAATCCGCGGGGACCCCTGATTTC
TTTTTCAAATTTGCAAGCGTTCCGTTAGCTTTCGTTTGAGCACTTCAGCG
TCCCGATCGGGTCACGCACCCACGAGATACAGCAACACCCGCTCCCACAC
CCGTGATGCGGGGCATTTTCATCCCTGTGGCGGGTCTGTTGCTAAGCATT
GCGAGCATGGGCCGGGCAAGAGTAGACCCACAACAGGCGCAGAAGGCTTG
CGATGCGGTCCGCAGTGGTCAGTTGTCTCTCAGGGCTGCTGCCAAGGCCT
ACAGGGTGAACAAGGACGCGCTCTCGCGACGTTTGAGGGGTGCTATGGCC
ATGGATGCGAGGGTTGGCCCCGAGACTGTGCTGAGCAAGGCGGAAGAAGA
TGCGGTGGAAGATGTGTTGATCTACGCTTCTCGACACTTTCTGAGTTTCG
GTCGGCAGCAGCTCATAGATGCGGTGCGAGTGCTCTGCCTCGACGGACGC
CCGGTGCCCTGGGGCCCAGATAAGGGCCCGGGGCGCAGCTGGCTTGACGG
CTTCATGGCGAGGCACCCGGCGTTGTCGGAGCGAACCACTCACATCTACG
AGGCAAACCGTAGATGCGACATTTGTGGCCCCTGGCTGGATCGATCCCAA
TTTTTGTTTTTTTCTACATAGACATGAGTTGAAGCAAAGCGTATACGAAA
AAAGTCAGGTCTTGAAACGCTTTGGATCTCACGCAATCACCACATCTTTA
AAGTGTCTCTTAACGGGGGCGGGGGTGTTTTCCACCGTATTATCCCGGAA
AAATTAGGGGTATTACAGGAGCCATATCTTCCCAGCGCTCACGATTTTTT
TTTTGTTTTTTGGAGGTAGCCTGTGATGTTAGCTATCGTACGATACCTCG
ACGTCAACGATATTCGTCCTAATAGTCAAGAACGAGCTGTTTGAGCGGAG
GGTGGCTTAAGTGTCTCTTAGTTGGTACATTTACTCTACCGATCAGGTTC
CGGAAGCGTGAAATTGTCCGTGAAATCTGCACGCAAGACCGGCAGCGTGA
AACTTTGCGGGATTTTTTTGCGATTTGATTGACCCTTACGGCAATACTGC
TGCAGCACGGTGCTGCTGTAAAGGATTGGAGGACGCGAAGCGTCGTTGTT
GCTGTTGTTGTGAACAAACGTACCAGTAAATTTTGAGTTCGGCCACGGAG
TATTTCGTGTGTTTCTTGTGTCTCGCCCACTACCCTTCAATCCGGAAGAG
CTAGTTTATGGGAATGAAAATTGCCCCATTTCGTCCCGTAGGAGGCAGGC
GTTGACACGTGGCAGGCTCGAAGAACGGTAGACGAAGTCGATGGAGTTCA
TACTCGATGCACAGGTCATTGTTGTGTTCCCGTCTAAACCTGCTGCGTGC
CAGCAACCCTCATGCAATTTGTATTAGCGATATAGTCTCTTGAAGCAATG
GAGTTAGACCAGATGTTGGTTGGCAATGTAGCGTGCAGGTAAGCGCACAA
ATCGATTGGGTCTATCCACCGCGTGTCCTCGGCTCCTTCTGCAGGCACAT
CTTCGAGATACAGCGGACGAGAGTACGGGCGATGACTTGGACGGTGGTAG
TGCTTCCTCCGACGTCTTTTTCGCCGTAGACGTCGAGTGCGTGCTGCACA
AGTACCGGAGATGGCACGACTGCTTTCCTCGTGTCAAACCTTTCTACGGT
GAGCGAGAACTCGCTTCATTCACCCTGTCCACGAAAAGGCGTACATACGT
AAGGTGTCAGTTGTACGGGTGCGAAGCGACCTACACTCGAGGCACGAAGC
GGCGTATTTTCGACCGGGGCCGGGGGGGCGCGTACTCATGTTTTTGCGAG
CCCTAGCGGCTACATAGACCATTGACAAGTCCTCGAGAGGATCGCACATT
GTTCCCACAGGACGGATCACCTACAAGTATGACCATTCCTGCCTACTTTT
GGTGGCTCAAGAATGTTCCCTGGCCTATCTTATCCTATCGATATCACTTC
CCGCCCACTCGGCCGGTGCCGGTTGCTCAGATCGGGGTGCATTCAGAACC
TTTCCAGTGCAAATTTTCCTCGCCCGTTTGCGTGCATCGCAGCGGTGAAG
TGCAACCCTAACTCCGAGGTGGTGCGCGTGCTTGCGGCCACCCCCGGGTG
CGGGTTTGACTGCGCTAGTCCCGCCGAGATGGACCAGGTGCTCGAGTGCG
GTGTGGACCCCTCTCGCATCATCTACGCTAATCCCTGTAAGGACTTGGCC
GCGCTGGAGCACGCGTTATCAGGTGAGAGCCACAGCTACGGTTATTGCTA
CATGGCACCACCACCACCGCCATGATCACCACCAGCTTACAGAGTCTACT
TCCTTGCGAAGGAGAGATGGAAGACTGCCTTACCTCTCTGTTTGGCACTG
TCCCCCTCCGCTCCTTCGCGCATAATTTGCTGTCTTTTTGCTGTTCTGGA
ACTAGTTTTCGGTGGGCGCCTTCCGTATTAGGAATGAACGGGTGTGGTCA
CTTTCGGCTTCATGGAAAACTTGTGCAATCACAATGGTTGCACGTCTACC
GCCAACAACACCTCACTTCTCTGTGAGGGAAGGATAAGGATCTGCTTTGT
TTTTTGGGTGGGTGCGGACTGTTGACAATCTCCGAAGTAACGTTATTGGC
AATCTCCGAAGTAAGGGTCGCGTTTCCTCACACTTGGTTCGTGCCTGTTG
GCGCTTGCTCGATTCAACCGCGCAGCTGGTGTCGCGACGATGACGTTCGA
TAGCAAGGACGAGCTGTACAAGATTAGACGGCTACTTGACTCTCGGGCAA
AGGTGAGTCCAGGAAAGAAAAATAAAAGAGGGTCAACAAGGGTGCACGAA
AAAACATTTCCGACACTACCAGACAAAAAATATTGTCAGACCGCTCCGGG
GGGGCCGAGGGAACGCCCTCGACGCCATACAATTTCCTGTATAAACATGC
CCATACTAAATACTTGATATAAGGGGGGCACATTTCGTGCACGGGGGAAG
TAACAACCCACGTAGCCGCGAGCTTGAGAAGGGGGAGGGTGGGGTGGGGG
GCAAGGGGAAGAGGAGGGAGGGCGAAGGCGCTCGGGGCGAAAGCGCTCGG
AGAAAGAGCGGTTTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_464:146591..152706+

>EsuBft816_2a-0001 ID=EsuBft816_2a-0001|Name=EsuBft816_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=657bp|location=Sequence derived from alignment at Scaffold_464:146591..152706+ (Ectocarpus subulatus male Bft15b)
ATGGCCATGGAGCCCCCGACATCCGCAGCAAAGCTGCTCCTAGATACGCA
ATTGGACCGAGCTGTGGACTTCACCGCCCTCTCCATGCTGCCCAATGTTG
CTGACGGGGGCAGCACGGCGGACGTTTCCAGTAGACGCTTGCCTCGGGTA
CCAGTCGCTGGATCTAAGGACTGGCTGCCGAGCATGGTTGAAGTCGGCCG
GCAAGAAGCACATCTTCGAGATACAGCGGACGAGAGTACGGGCGATGACT
TGGACGGTGGTAGTGCTTCCTCCGACGTCTTTTTCGCCGTAGACGTCGAG
TGCGTGCTGCACAAGTACCGGAGATGGCACGACTGCTTTCCTCGTGTCAA
ACCTTTCTACGCGGTGAAGTGCAACCCTAACTCCGAGGTGGTGCGCGTGC
TTGCGGCCACCCCCGGGTGCGGGTTTGACTGCGCTAGTCCCGCCGAGATG
GACCAGGTGCTCGAGTGCGGTGTGGACCCCTCTCGCATCATCTACGCTAA
TCCCTGTAAGGACTTGGCCGCGCTGGAGCACGCGTTATCAGCTGGTGTCG
CGACGATGACGTTCGATAGCAAGGACGAGCTGTACAAGATTAGACGGCTA
CTTGACTCTCGGGCAAAGGCGCTCGGGGCGAAAGCGCTCGGAGAAAGAGC
GGTTTAG
back to top