Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FT52 |
| ProteomeId | EsuBft811_9 |
| Protein domains | SignalP-noTM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 199 |
| Hectar predicted targeting category | chloroplast |
| Evalue | 1.08e-137 |
| EggNOG OGs | 2C200@1|root,2S7SE@2759|Eukaryota |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-19_003560.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft811_9a-0001 ID=EsuBft811_9a-0001|Name=EsuBft811_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1997bp|location=Sequence derived from alignment at Scaffold_230:345346..351335- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCACCATCGACCATGCGGCGCAATTCCACGGTCACGCGAAGAGGCTACGC
GATTAAGAATATGAAGCGACCACACGGGGGGCGACGGGGTAAAGGCGTAC
CCCCCTCGGTTGCCTTGTGCTGCTGCTGGCTGCTTCAGCTGCTGCTGCAG
AGCCTGCTCTATTTCCACTCCCCTCTCTTGACCCCCTGCCAGATCAATCG
AACCACTCCGATCAACCATGAAGGCGTGCGCTTTCGTAGCTGCCCTGGTA
GCTTGCGCAACCAAGTCGCTGGCTTTCGTGGCCCCGCTTCAATCATCCAC
CCTCACCTTCTCCAGCCCCCGCTCAAGCCTTGCGGTTGCAGCAACAGCAA
CATCACCAGCGCCGGCGGCACGGCAAGGCGTGTCGGGCGTCTCGATGAAG
CGCAAGGGCAAGCCGAACACGAACATCGCGCAACGAGGGAGCTTCAACCA
GATGCAGCAACAGGACATGCAATATCAGGAGCAGCGAAAGGCGATGCAGT
CGGGGATGCCATCTTTCCAGATCTACGTGCGAACGAAGGTCAACAACATG
TGGTACCCGTGCGGGCTGATGCAGGGAGACGACAAGGCAAAGGCCACGGT
TGACGCGATGATGTCGGGTCTGCTGAAGGACGTCTCGAAGTACTCGCTGG
AGAAGGGGGTCGCCTCGAGCGTGCTGGCGAACCGAAAGGACCTCGTCCGA
CAGGTCACCACGGCGTATCCTCAGATCGCTGGAAAGGAGCTGACCTTTGG
GTTCAAGATCATCTACGCTGACTTGGAGGCGAAAATGGGCAAGCAGGAGG
TGACGGAGATCACTAAGGACATGACCTTGGGCCCTCTGGATGCCTTCAAG
AAGAAAATGGGGTTCTAAGAGGCCGAGGGGGTTCTGGTCGCCTTTTTTTT
GGCTTGCCCTCTGCACCGGTGACGGGATAGGAGCACCTCGCCTGACCACG
GCGCGGATCGGATCGAAGACAGAGGTTTAACTGCACGCCGCATGGATCCA
CCATTTTGCAATATAGATTTCGGCGAGTGGTAGGGGCGGGTGCATGTGCT
GCGATGGGCTACCCAAGCGTCTCACATGTTTCCATTGCTCGCTGGCCGGC
GGCCGGCGTTTGAGAGCTCCTTGATTTGAAATTTGACTGATTAGTTGGAC
GGCTGTCTGCAGCTGCTGCAAATGTAGTGGTCCGGGATTCGCTGAGTGTG
ATGGAACTGAATACCGGCCCTGTCGAGCGTGCGTGTGCAGCATTTTCTTC
ATTCGCGATGCTTAAGAAACGGAAGATGTATCTATTTTCCTGACACGTGC
GACGAAGGCGCCAGCCGTGGGTTCAAGAGGTACAGATCGATTTCACTTGC
TCGGGGTACCTTAAGCATAAGAAGAGTACCAGATATGTAGTTGCGTGGCC
CTTGTACCAGTACGAGCACAGCGCGGGACGCCGAACTCCGGGCTTACGAA
GCTTGCTCGGACACCATGAATGGTGACGACGATGTCGCCGCAGACTCCTT
GCTGCCCGTAAATGTAATGAGTAGGTGAAGTCGCGCACTGCTTTTGTGGG
CGACTATTTCATTATTTCCGGCTACTTGTTGTTGCCCTGGTGTGTACGAT
GATGTCGCCGGTTTGCCGTGGGGCCCCGTGCCCGAAGCGTTTTGCCAGCC
TCTACATAGATGCTTACCATTGTGTGGTTGCCCTCTGATATCGTTCCGAG
AACAGACTAGAGATGAATTCGTGCCTCAAGTATTTGTGTTTGTGAGATTT
ACTGCCCCAGAGTCTGGCTCAAGATGGTGGCGGTGTAGAAAATGGAAACA
AGCGCTTAGTGCCTGATTGACCCAGCCGCATCTCAGGAAGAACAAGCAGC
CTGTGAAACCCTTGCCGTTGCAAACAAATTGGAGGTGCAGACGTGACATA
AGATACCATACCCCCAGGACCGAATCCTCAGAGCTCGACTTGTTGTGGTA
CACACTGCACTGCTGTCACTTGACGACGGAGCGAATAATGCAAGACG back to topprotein sequence of EsuBft811_9a-0001 >EsuBft811_9 ID=EsuBft811_9|Name=EsuBft811_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=216bp
MKACAFVAALVACATKSLAFVAPLQSSTLTFSSPRSSLAVAATATSPAPA
ARQGVSGVSMKRKGKPNTNIAQRGSFNQMQQQDMQYQEQRKAMQSGMPSF
QIYVRTKVNNMWYPCGLMQGDDKAKATVDAMMSGLLKDVSKYSLEKGVAS
SVLANRKDLVRQVTTAYPQIAGKELTFGFKIIYADLEAKMGKQEVTEITK
DMTLGPLDAFKKKMGF back to topmRNA from alignment at Scaffold_230:345346..351335- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft811_9a-0001 ID=EsuBft811_9a-0001|Name=EsuBft811_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5990bp|location=Sequence derived from alignment at Scaffold_230:345346..351335- (Ectocarpus subulatus male Bft15b)
GCACCATCGACCATGCGGCGCAATTCCACGGTCACGCGAAGAGGCTACGC
GATTAAGAATATGAAGCGACCACACGGGGGGCGACGGGGTAAAGGCGTAC
CCCCCTCGGTTGCCTTGTGCTGCTGCTGGCTGCTTCAGCTGCTGCTGCAG
AGCCTGCTCTATTTCCACTCCCCTCTCTTGACCCCCTGCCAGATCAATCG
AACCACTCCGATCAACCATGAAGGCGTGCGCTTTCGTAGCTGCCCTGGTA
GCTTGCGCAACCAAGTCGCTGGCTTTCGTGGCCCCGCTTCAATCATCCAC
CCTCACCTTCTCCAGCCCCCGCTCAAGCCTTGCGGTTGCAGCAACAGCAA
CATCACCAGCGGTGAGTCACGACCGTGCACACAGATAGGCACACAACGCG
AACCGCATTGGGCGGTGTGCAGGGTGATGCGATCGTTGAGAGTTGGCGGT
AGCTGTGTCCCTGCTGAAGCCTGTGCGGGGCTCCGGTGGATGCCGGTGTG
TGTGTCAGAAAAAACATGAGGGGCGGCCCTGACGAATGAAACCACATCGA
AAGAGCAGCAGCACACCTGGGAGGGGGGTGGTGGCAAAGAGCTCATGGCC
ATGGCCTCGGATACTAACACGTGTCAAGTGGGCGGCGGGAAGTGAAAGGC
CAAGCATTGCTTGCAGTGCTGCCCTCTTCGGTTGATTGTGGTGGTATTGC
TGTCGTCATCAACCCAAGCGCTTGCTTCTTGTTGAATCTGCTGTGTATTT
TACGACAGCAGCAGCAGTGTACAGCAGGAACTCTCTCTACGGTTAAAGGT
ACGCTTCGTGCTTCGGGTACAGCAGTACAACCTCCTGGTACACTATCTAG
GAGGCAAAGACGTTGATCTGACTCCTTATCGTCGATTACCGCAGCCGGCG
TACAGGGGGCGCGCTGTATGGGGTGTTGACGTGCCAAGTACCACACAGAG
CTGCTACAAATACATCCAATTCTGGTAGTATTTTTACCCCAAGACAACTA
CTTGTGCAACATGTACAACCAGAACCGGTCGCCCCGGTGGTCTAATTAGG
TAACCTCGCAGCCTACTACGGGCCAGGTTATGGGTTCGAGTCCCCGCAGA
GTGAGTTTTTATTTCACTAGATAAATCCTGGTCTAGGATGAAAGCGACGC
GCTGCAAAGCGCGTTGTTAGTAAACTTGATCGACTTCAGACGTCGCGAGG
GAAGGGATTGCTGTACCCTTCTCGCGATAAAAATATCTCAGGCAGGAACC
GCAGGAGGGGGTCCAACCCCCCTCTCCTGTGTGACCCCGGTTGGGTCGTC
TAACTGGTAGAAGTGGAGGATAGGGGCCAGAGGGGCAGCCGGCAGAATCC
AATAATGGGAGAAAAACACAAGAGAAAACAGACGAATTCCGAGGCCAGCG
CGTTACTCATTGCTGGCCAAAAGGTTCTCAGGCAGTTTATCACTCAAGAG
GGTGCTCAATAGCTCTGGTGGTCTGCGTTATGAGCGTCTTATGCAGGCGT
ACTCAAAGTCGAAGTGGCACGAGCATAACTGGGCGCTCATGAAAAATGCC
CTCTTCGTTGATCCATAAGCACAAACGAAAGCGCTACACTCGGCGGCAGC
GTCGGTCACCACGCGGCCCGAAGTGTAGCCGATTTAACCCCCCTCGGCTG
GTGTCGATTGATGGCACCATGATAGCAAGGGCCAACAAGAAGGAAAATCG
CACACTCAAGGGTACAGGTAGCTGATCGTGCAGGCAATCCCTCTTTGCTT
AGTTATGCCCGAGCCTACCCAAGGTACTCTTACGCCTCAGTGGTTTCTTG
ATGCACGTAATACCAACTTCGGGAAAAAGCTACAAATTCGAAGCATGTGG
GTATTATCATAGCTTCGAAAGATACCTGACTCTTCTCTCCCGACCGAGCA
CGGGAGATTTTTGAGGAGGCAAGGGTCGAAGAACACTTGCTCTCCCTCTT
GCTCGAGCATTGTTCCTTCTCCCGGTACTGCATTCGACCGCCAGTCCTAT
CCCGTTTTTGAGGTCGGGTCGGAACGTCGGAACCAAAACGCACCATTGTC
GTAGTATGGTGTCGACACGTCAACGTCGACTCTCGCATTCTCTCGACCCT
CATTCTGTGGTCGATCGATTGGCCCCTCGCGCCGACGTCGTCGTTTGTTG
TCAACGAAAAGCCGGCGGCACGGCAAGGCGTGTCGGGCGTCTCGATGAAG
CGCAAGGGCAAGCCGAACACGAACATCGCGCAACGAGGGAGCTTCAACCA
GATGCAGCAACAGGTGCCCCCCCCGCGATTAGTGTATCTCAGTCATCATA
AGAACGAGAGAGTGACGAAGAGTGCCTGGCGTGCATGACGTCAGGTGATT
GTTTATTGGCACCAGATTATCTTCGCGTCCGAACGTGAATAATATGCGAG
TGATGCAAGCTTGATATGTGTGATGGATGAGCTCACTTTTCAGTTTTTGG
CGGTAGATGACTCGTTGCAGTCGACACAACGAGCTCAGCCTCGTCAGACA
CAACCCCATCTTGAATTAATTTGGTGCCTCGGTGCGTTCACGTTTTGAAC
AGGACATGCAATATCAGGAGCAGCGAAAGGCGATGCAGTCGGGGATGCCA
TCTTTCCAGATCTACGTGCGAACGAAGGTCAACAACATGTGGTGAGCACC
CGGAGCAGGGCTGACGTATAGTTGTGTACACGGCATGGTGCTCGAGACTT
TTGGCCCCGTCACAAAACCCTAGTCGAGCGATTACTGAGGACGGAAAGGT
CTATGGGAGGGCCGGCAGAGCGATATGTAGGGGTGTGACTGGGCCGGGGG
GGGATGCTCCAGTGGGCAGGGGTGACGCCTTTTTCTGTATGCCCTCCGGT
TGGGATTCATTGCATTGATGCTGCGGCGGGGCAATGCCTACCTCCTGGAC
TTGACAACGCATGCGTCCGCGTATGTATTGAGCCTGTTACGCTCCGTTGT
GCCGTACATCTGCTTCAGCGTTTTTCGCCCAACCCCTAGGCCAGTGTGGC
AACCATGCAGGCACGAGGATGAGACTCCCCCACGGGGATCGCACAAGATA
CGTGGGGCCCGCGCAGCCTTTCAAGCACGTACCGTGTTCAGGAGGGTTGA
CAAGCCGATGCGAACGCTCTCTTTTGTCTGATCACTTTGTTGGTGCTATG
ACATCACAATCAGTGGCAGCTGTGCGCACGCCCACGTTGTGCCATCCACA
CCAACGCCTCCCCTCGCCGGCCAGGTACCCGTGCGGGCTGATGCAGGGAG
ACGACAAGGCAAAGGCCACGGTTGACGCGATGATGTCGGGTCTGCTGAAG
GACGTCTCGAAGTACTCGCTGGAGAAGGGGGTCGCCTCGAGCGTGCTGGC
GAACCGAAAGGACCTCGTCCGACAGGTGTGTGGTGTGTGTGCGGCAGGGC
GGGACGGTATTGTGTTGCACGCCGGCATCCGAGTTTCCCCCGCGGGGGTG
CTGTCGTGGTGCCCTTGGCTTCTCCGCCCTTTCCGAAAAAGCCGCCCCTT
TTCTTTTCGGAAGGACATCCCCTTTACGAACGAGGTGCACCTTTTCTTTG
TGAAAGCCTTGACTTTCGCGAAGGACCATACATCGACGAGGGAGCTATCC
CTCGGTGCTCGATCCGGGAACAGAAATCATGGAAAGAGCGAAACCACTCG
CATATCCGACCGCGCTGCCACGCCGGACACACGGGGTGAATTTTAAGCCC
TGTTGCTCCATGGGTGCCAACTCCGAAGGATAGCTAGCTGTTCGGAAAGG
CTTCGATGAGACCTTTCCAACCACCCTGCACCGGCATTTTTGTTCTCCTG
TAGAGCAATCGAGCTTGGAATATCGGGTCAATGGGGGTCTGAAATACACT
ACCGTAGGAAGCCTGTAGAGGCCGCATGATTTTTGATCGCGGTGACGAAC
ATGTCGAGGACATGAAACGACAAACAGCCGTTTTGAGTGAGTGGACAGCG
GTGGAATTCAACTTTCTCGCCGATATTCCACGTCAATAGAACGCCCCGAT
GCAGGTATCAGAGGAGGCTCACCGTGCTACATATGGTTCCAGACCTACAA
CGGCAAGAACATACTCTGCAGCACTTCAGGGTTGCGGCGGCGAAAGTTCT
TGCTTGGAGATATAGATTAATTATTTCAATTTTCGCTTTTTTCGTGGTGT
CTCCCCGCCCCACTCCTGCTGCAGGTCACCACGGCGTATCCTCAGATCGC
TGGAAAGGAGCTGACCTTTGGGTTCAAGATCATCTACGCTGACTTGGTGC
GCATGCAGCTTTTTTTCACCATGTTTTCGCTTCAGCTCTTGGTTGATGCT
GCGATACTCGTGATGTTTTCGGAATTGCTTACACCCCAGGTTGCTGTCTA
CAAGTGCATAGGAATCACATACATTTGGCCGAAGGAGATGTGCTTGTTAC
TCTTTCTTGTACGTTTGTCGCATCTGTGGGGTATTGTTTGCCCTTCCTGA
AAGTCTTCCGCGTTGCGTCGTTTGAAGGCGTAGCAAGTTTCCGGGCTACC
TTGGCCGAGTCTCGTGGCATTGCGCGATGCGATGGGTTGTTGAATGGTTG
GTGGAGAAAAAGGCGAGGAGATAAGTTTGTTGGAAAAGATTGGCCTCGCA
CGATAACACGTTTATACATCGCTTGCGAAGCTTGCCGATGCAGGTAGTAA
GTAGATGTTGAGGTCATCCAAGACGCCCTTCCACTCTATGCATGTTACCC
ACTCTCGTCCGCCGTGCGCACACCCCACGTTACTTGCCCATGCGTTGTTT
TTCTTTTTTTCGCTGCAGGAGGCGAAAATGGGCAAGCAGGAGGTGACGGA
GATCACTAAGGACATGACCTTGGGCCCTCTGGATGCCTTCAAGAAGAAAA
TGGGGTTCTAAGAGGCCGAGGGGGTTCTGGTCGCCTTTTTTTTGGCTTGC
CCTCTGCACCGGTGACGGGATAGGAGCACCTCGCCTGACCACGGCGCGGA
TCGGATCGAAGACAGAGGTTTAACTGCACGCCGCATGGATCCACCATTTT
GCAATATAGATTTCGGCGAGTGGTAGGGGCGGGTGCATGTGCTGCGATGG
GCTACCCAAGCGTCTCACATGTTTCCATTGCTCGCTGGCCGGCGGCCGGC
GTTTGAGAGCTCCTTGATTTGAAATTTGACTGATTAGTTGGACGGCTGTC
TGCAGCTGCTGCAAATGTAGTGGTCCGGGATTCGCTGAGTGTGATGGAAC
TGAATACCGGCCCTGTCGAGCGTGCGTGTGCAGCATTTTCTTCATTCGCG
ATGCTTAAGAAACGGAAGATGTATCTATTTTCCTGACACGTGCGACGAAG
GCGCCAGCCGTGGGTTCAAGAGGTACAGATCGATTTCACTTGCTCGGGGT
ACCTTAAGCATAAGAAGAGTACCAGATATGTAGTTGCGTGGCCCTTGTAC
CAGTACGAGCACAGCGCGGGACGCCGAACTCCGGGCTTACGAAGCTTGCT
CGGACACCATGAATGGTGACGACGATGTCGCCGCAGACTCCTTGCTGCCC
GTAAATGTAATGAGTAGGTGAAGTCGCGCACTGCTTTTGTGGGCGACTAT
TTCATTATTTCCGGCTACTTGTTGTTGCCCTGGTGTGTACGATGATGTCG
CCGGTTTGCCGTGGGGCCCCGTGCCCGAAGCGTTTTGCCAGCCTCTACAT
AGATGCTTACCATTGTGTGGTTGCCCTCTGATATCGTTCCGAGAACAGAC
TAGAGATGAATTCGTGCCTCAAGTATTTGTGTTTGTGAGATTTACTGCCC
CAGAGTCTGGCTCAAGATGGTGGCGGTGTAGAAAATGGAAACAAGCGCTT
AGTGCCTGATTGACCCAGCCGCATCTCAGGAAGAACAAGCAGCCTGTGAA
ACCCTTGCCGTTGCAAACAAATTGGAGGTGCAGACGTGACATAAGATACC
ATACCCCCAGGACCGAATCCTCAGAGCTCGACTTGTTGTGGTACACACTG
CACTGCTGTCACTTGACGACGGAGCGAATAATGCAAGACG back to topCoding sequence (CDS) from alignment at Scaffold_230:345346..351335- >EsuBft811_9a-0001 ID=EsuBft811_9a-0001|Name=EsuBft811_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=651bp|location=Sequence derived from alignment at Scaffold_230:345346..351335- (Ectocarpus subulatus male Bft15b)
ATGAAGGCGTGCGCTTTCGTAGCTGCCCTGGTAGCTTGCGCAACCAAGTC
GCTGGCTTTCGTGGCCCCGCTTCAATCATCCACCCTCACCTTCTCCAGCC
CCCGCTCAAGCCTTGCGGTTGCAGCAACAGCAACATCACCAGCGCCGGCG
GCACGGCAAGGCGTGTCGGGCGTCTCGATGAAGCGCAAGGGCAAGCCGAA
CACGAACATCGCGCAACGAGGGAGCTTCAACCAGATGCAGCAACAGGACA
TGCAATATCAGGAGCAGCGAAAGGCGATGCAGTCGGGGATGCCATCTTTC
CAGATCTACGTGCGAACGAAGGTCAACAACATGTGGTACCCGTGCGGGCT
GATGCAGGGAGACGACAAGGCAAAGGCCACGGTTGACGCGATGATGTCGG
GTCTGCTGAAGGACGTCTCGAAGTACTCGCTGGAGAAGGGGGTCGCCTCG
AGCGTGCTGGCGAACCGAAAGGACCTCGTCCGACAGGTCACCACGGCGTA
TCCTCAGATCGCTGGAAAGGAGCTGACCTTTGGGTTCAAGATCATCTACG
CTGACTTGGAGGCGAAAATGGGCAAGCAGGAGGTGACGGAGATCACTAAG
GACATGACCTTGGGCCCTCTGGATGCCTTCAAGAAGAAAATGGGGTTCTA
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