Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FT55 |
| ProteomeId | EsuBft811_8 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 155 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 1.9e-83 |
| EggNOG OGs | 2E0FN@1|root,2S7W7@2759|Eukaryota |
| Ec32 ortholog description | imm downregulated 17 |
| Ec32 ortholog | Ec-19_003550.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft811_8a-0001 ID=EsuBft811_8a-0001|Name=EsuBft811_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1554bp|location=Sequence derived from alignment at Scaffold_230:340175..342856- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAACAAGTCACTCTTCACGATGTTCGCTCTATCGCTGCTGCTCGCCCT
AGCTGTCTCCTCTGCTTCGGACGGAGGGTCCTGCACCACATACGATGAGG
ATCTAGAAGTAGCGAAACTCCTCGACGACACGTGCGAATGGGACACCTAC
ATGTGCTGCTTTACCAACCACGACTCAGGAGAGGGGGTGACCGCGAACAC
CGATGTTTGCAGCGTACCGAACGAGGGTTCCGTGTACTGCCACGGCTTCG
CCTGGCCGGATGGCGCAGATGTGAACAACCACATCCTTCCCCTGTACCAC
TATGTGAAGAACATTGGCCGCACCGAAGAAGAGGGGGGTTACTACGGAAG
CGTGGAGGGAGCGCCGGAATGCGGGTGTATCGAGGAAATGCCTCAAGTTT
CTTTCGCGGAGTGCTCCAGGTTCGATATCGACGGGATCGTTGGGTGCGGA
GAAGGCGGGCTTTACAGCCAATACAACGGCCGCCTGGGCGCGCCCTACGG
TGAGATGGAACACAACCTGGTGAGGTCTTGCGACAATGCCTAACTGCACG
ACAAGGCAGAGGGCCGGGAGGGCAAGTTCAAGGCGTGCACGAACAACAAC
CTCCGTTACCGCTACGAGGAGTGTACCCTGTGGGGAAGCTCGACAACCTC
GGCGGCGGTGACTGCGACAACGCCTAGTCGAACCCGGTCCATGGGAGGAG
ACTGGGATTGTTTTGTTGTTGCGACTGGGAATACTAGGAGTAGGCAGGAT
TGAGGACTAGGGTCTCTCATAGATGCGAGCATCGGGACTTTGATGAGCAT
GCTGGTACCGTTAGAGAATTGGGTCTTCCTGGTTGTGCATGTGGAGTGGC
GCGAGTCCATTGGAAGTCTACACAGCGAAAAATATTTCCACGATATGGTG
CAGATACATGGAATACCGTGGTCTCCGGTGGAGTTTTCTGGACATCCATG
GCCTTCTTGCTATTTGCAGTTGGGTGAAATCGCGTGGGTCGCGACCGCAT
CTTAACGGGTGCCCATGGTACGAGACTGAGTCGAAATTGGTCTCTTTGCA
CGGCGGTAGGATGTGGTCGACGGATTTCGTTTCCGCAGTATTTTACCGAG
GCTATGGTAACAAATGTAAATTATAGGCCCTAAATCATATCCTTGTTCGG
GAGCAATTAGTTCTTGCGCTCGTTGCTCTCTGATCGTGTTCGATTTGTTC
GTTGGTGTTTTCACTTTTGAACGATTTTGTGGTGCGTGTTTTTTCTTGTA
TGGTGGTCGGGAACTGCTGTCGTCAGTTTTGGGGTAACATAAGAAGCTAT
TTGTAGCATCCGCTTTGCACAATTCCAATGCGTACAGGATCGCAACATTT
CGTTCTGTATGCAGACCAGAGGTGTGGGACTTACGAAGACCAAATGTCTA
TAGGACGTTTTCTGGATTTACAAGGCCGTGCAATCATTTGGATGAGCTTG
CACGTTCGATATTCCTGTGATGTCAGGTGCTTTCTGTCGATATACATTTG
TTGAGCGTTGCCGGTTATGACGGGTTGGCACGATAGTCTTCCTTGAAAAA
TAAG back to topprotein sequence of EsuBft811_8a-0001 >EsuBft811_8 ID=EsuBft811_8|Name=EsuBft811_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=180bp
MNKSLFTMFALSLLLALAVSSASDGGSCTTYDEDLEVAKLLDDTCEWDTY
MCCFTNHDSGEGVTANTDVCSVPNEGSVYCHGFAWPDGADVNNHILPLYH
YVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCG
EGGLYSQYNGRLGAPYGEMEHNLVRSCDNA back to topmRNA from alignment at Scaffold_230:340175..342856- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft811_8a-0001 ID=EsuBft811_8a-0001|Name=EsuBft811_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2682bp|location=Sequence derived from alignment at Scaffold_230:340175..342856- (Ectocarpus subulatus male Bft15b)
ATGAACAAGTCACTCTTCACGATGTTCGCTCTATCGCTGCTGCTCGCCCT
AGCTGTCTCCTCTGCTTCGGACGGAGGGTCCTGCACCACATACGATGAGG
ATGTGAGATTGCGAACGAACTGCGCTTACAAGAATAGGGAACTGTGAGGA
GACTGTGGTCTGTGCGCGTTGCGATACGAGTACGTGTACCACTCGAGTTT
TGAAATTTTACGCATGACTACACGCACTAGTATTGCACGCGCGCCACGCT
CGCTATCACTGGTCCATATCACTGGTCCACGCACGCACGCGCCAGCAGTG
TCGAACATGATCTAAGACTCACGTTTGTGTGTTCCATCTTGTGCTTGACC
GTTTTCAGCTAGAAGTAGCGAAACTCCTCGACGACACGTGCGAATGGGAC
ACCTACATGTGCTGCTTTACCAACCACGACTCAGGAGAGGGGGTGACCGC
GAACACCGATGTTTGCAGCGTACCGAACGAGGGTTCCGTGTACTGGTGAG
TCCGTACAAGTCTTGGGTATATAATCGCCTCATTTCATCTCGACTGCTGC
AGTAGAGAAACAAAACATACACCTTACTTTGCTCGCCTCCTGCTGTAGTA
CTGAACGTCGATATTGGAACAGGGCAGTAGCCGTAGCGTTCAACAACACT
CCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCCCCCCCCCCCCCCCTACTCCCGCACCTCCGTGTTGATGTAATC
AATGACAGCCACGGCTTCGCCTGGCCGGATGGCGCAGATGTGAACAACCA
CATCCTTCCCCTGTACCACTATGTGAAGAACATTGGCCGCACCGAAGAAG
AGGGGGGTTACTACGGAAGGTGAGTCTGTTTCTTGGGGACACACCTACAC
AGCATTAGCGCTGCTATTACTGTCAAGTTGCAATGCTTGCATGGTCGACA
ACGTAAGCGTTTTGTGGCAGGAGGTTCCTACAGCATTGATCATTTGGAAT
GGAAGAGCGATGACCACGTCGCCGCGGCAACCGTAGGCCGTGGTCGAGTC
TTTCTGCTTGATGTACCCACGGTGGACGTGCATGGCTCCTGTTCCATCTT
TCAATCCTGGCCGTTCACGATACATGTCTGCATTCGCCTGACGCTAGATC
CCTTTCCTCCAATGTGTGCCGTTTCGCTTTGGTCCTCCGTCATGGCATCA
CAGCGTGGAGGGAGCGCCGGAATGCGGGTGTATCGAGGAAATGCCTCAAG
TTTCTTTCGCGGAGTGCTCCAGGTACGTTATGGGATTTCAACCGCATGTT
TGTGGCGGCGGTCGAGGCAAATCCCGCCGACTTTTTACGATTTGACTCGT
ATATTATCCAGGTTTTTTGTTTGACTACTGTGATGTCGTTGTGAACGACC
GTCGTTGTGGAGTTGAATTGAAATGCCTACAGTAGTTGCATATACGAAAT
TTGGTTGCGGTTGAAGCGTACACACCCGCTTTTCAACAGCTAGTGGAACA
TATTGTGACCTTCGACATGACCCTTTCCCTTGCCTTCTTATTGCCAGGTT
CGATATCGACGGGATCGTTGGGTGCGGAGAAGGCGGGCTTTACAGCCAAT
ACAACGGCCGCCTGGGCGCGCCCTACGGTGAGATGGAACACAACCTGGTG
AGGTCTTGCGACAATGCCTAACTGCACGACAAGGCAGAGGGCCGGGAGGG
CAAGTTCAAGGCGTGCACGAACAACAACCTCCGTTACCGCTACGAGGAGT
GTACCCTGTGGGGAAGCTCGACAACCTCGGCGGCGGTGACTGCGACAACG
CCTAGTCGAACCCGGTCCATGGGAGGAGACTGGGATTGTTTTGTTGTTGC
GACTGGGAATACTAGGAGTAGGCAGGATTGAGGACTAGGGTCTCTCATAG
ATGCGAGCATCGGGACTTTGATGAGCATGCTGGTACCGTTAGAGAATTGG
GTCTTCCTGGTTGTGCATGTGGAGTGGCGCGAGTCCATTGGAAGTCTACA
CAGCGAAAAATATTTCCACGATATGGTGCAGATACATGGAATACCGTGGT
CTCCGGTGGAGTTTTCTGGACATCCATGGCCTTCTTGCTATTTGCAGTTG
GGTGAAATCGCGTGGGTCGCGACCGCATCTTAACGGGTGCCCATGGTACG
AGACTGAGTCGAAATTGGTCTCTTTGCACGGCGGTAGGATGTGGTCGACG
GATTTCGTTTCCGCAGTATTTTACCGAGGCTATGGTAACAAATGTAAATT
ATAGGCCCTAAATCATATCCTTGTTCGGGAGCAATTAGTTCTTGCGCTCG
TTGCTCTCTGATCGTGTTCGATTTGTTCGTTGGTGTTTTCACTTTTGAAC
GATTTTGTGGTGCGTGTTTTTTCTTGTATGGTGGTCGGGAACTGCTGTCG
TCAGTTTTGGGGTAACATAAGAAGCTATTTGTAGCATCCGCTTTGCACAA
TTCCAATGCGTACAGGATCGCAACATTTCGTTCTGTATGCAGACCAGAGG
TGTGGGACTTACGAAGACCAAATGTCTATAGGACGTTTTCTGGATTTACA
AGGCCGTGCAATCATTTGGATGAGCTTGCACGTTCGATATTCCTGTGATG
TCAGGTGCTTTCTGTCGATATACATTTGTTGAGCGTTGCCGGTTATGACG
GGTTGGCACGATAGTCTTCCTTGAAAAATAAG back to topCoding sequence (CDS) from alignment at Scaffold_230:340175..342856- >EsuBft811_8a-0001 ID=EsuBft811_8a-0001|Name=EsuBft811_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=543bp|location=Sequence derived from alignment at Scaffold_230:340175..342856- (Ectocarpus subulatus male Bft15b)
ATGAACAAGTCACTCTTCACGATGTTCGCTCTATCGCTGCTGCTCGCCCT
AGCTGTCTCCTCTGCTTCGGACGGAGGGTCCTGCACCACATACGATGAGG
ATCTAGAAGTAGCGAAACTCCTCGACGACACGTGCGAATGGGACACCTAC
ATGTGCTGCTTTACCAACCACGACTCAGGAGAGGGGGTGACCGCGAACAC
CGATGTTTGCAGCGTACCGAACGAGGGTTCCGTGTACTGCCACGGCTTCG
CCTGGCCGGATGGCGCAGATGTGAACAACCACATCCTTCCCCTGTACCAC
TATGTGAAGAACATTGGCCGCACCGAAGAAGAGGGGGGTTACTACGGAAG
CGTGGAGGGAGCGCCGGAATGCGGGTGTATCGAGGAAATGCCTCAAGTTT
CTTTCGCGGAGTGCTCCAGGTTCGATATCGACGGGATCGTTGGGTGCGGA
GAAGGCGGGCTTTACAGCCAATACAACGGCCGCCTGGGCGCGCCCTACGG
TGAGATGGAACACAACCTGGTGAGGTCTTGCGACAATGCCTAA back to top
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