Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FYJ3 |
| ProteomeId | EsuBft811_4 |
| Protein domains | SSF56672 |
| Protein domains | IPR012816 |
| Protein domains | PTHR11079 |
| Protein domains | SSF143990 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | transposon tf2-6 polyprotein os:schizosaccharomyces pombe (strain 972 atcc 24843) gn:tf2-6 pe:3 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2025 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.13e-51 |
| EggNOG OGs | COG3236@1|root,2S4FY@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG ko | ko:K09935 |
| Description | Domain of unknown function (DUF1768) |
| COG category | S |
| BRITE | ko00000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft811_4a-0001 ID=EsuBft811_4a-0001|Name=EsuBft811_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2025bp|location=Sequence derived from alignment at Scaffold_230:293234..296693+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCTCTGCTAACATTGACCCCGCCGGAGCCGCCGCCCTAAGGCCGCC
CTCCGGATCACGGCGCGTTGCGACTTCGCCCGCTCCTGCCTCGCTTTCTG
GGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCTTGAACCACCCCCGCCT
GTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGCACCGGCTCCGCCGTT
TGATGACAAGTGCGAGTACGCTTCGGATGACGTCCTTCTTTTCTGGAAAC
CTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCTTTTGACGTACTGGGG
GTACGTTATTCATGTGGTGAGCCACTTATGATGTCTGAAAAAGCGAAGTT
GTTTGGAGATATGACGTCGTATGACAAAATTATGGCTGCAACAGATCCTA
AGACACACAAGTTTTTGGGTCGAAACGTGCGTCCTTTCGACTATGCTGAA
TGGGAGCATCGTCGTGAAGAGATCGTGCTCACGGGGTCGTATGCCAAGTT
TGCTCGAAACCATGATATGAAACATCATCTACTGGAGACGGGTACCCGCC
TCCTTGCAGAAGCCAGCCCCTTCGATCGTGTTTGGGGTATCGGCATGTCT
GCATGCTTTCCAGATGCTAGCGATTCATCCAAGTGGGCGGCTAGCGGTAA
AAACCTGTTGGGAAAAGCTTTGAAGGAAGTTCGACGCCTTTTGCGTGATC
ATCCCCTCTCTGGCGAAGATTTCCCCGCTTCCAATTCTCCCACGCCCCCC
ATTTCGCAGCCTCCTCTCCATGGACATCGACGCATCCATGAGGTTGCTAC
TGCTACAGGTTGTGCCGAGCTCGAGCCGGGAGACGTAATTGGAGTGTCTG
CCGCGCCGCTACTACGAGTACCGGTGGAAACCCTGAAGGCGGCACCATCT
TCGATTCCTACCGGCCCCACAACATCTACATCACCACCTCGGGTCAACGC
CGTTGGCCCCAAGTCCGGGACTCACCGCTCTCCGGACCCAGCCTCTGCCC
CGCCTCCTCCGAAGCCGCCTCCACAAGAACTACTCGACCGCTTCTCTGAG
GCACAGCGCTCCAGCTTCATGCGCGTGTGGGCTAGGCTGCCCGGACGAAG
CCCGTTGCATCACGCCCGTATCGTATCAATATACTACCGGAAATTCCTCA
AGAATCTCGCCACCAAGGTGCGGCCTCTCAACTCACTTCTCAAACAAGGC
GTCCCCTTCAAGTACACCCCGGGCATGGTAAAGGTTGTCAATACGTTGTT
AAGCGAACTCGCTCGCCCCCCGATTTTGGTCTTCCCGGATTGGGCAGCAA
TCGAGGACAACAGCCGTCCTCTTCGTTTGTGTTCCGACGCGTGCATCGAC
GGTTTTGGCTCCTCCTTGGAACAAGGACAGCTCGATGGCTTGGTGAGACC
CAACGTGTACATCAGCCGCGCTACTCTTCCTGCGGAGCGTAACTGGACCG
TTTTGGATCTGGAGGCTGGTGGCATTGTTTGGGCCATCAAATGCCTTCGC
GGTTATCTGTGGTCGACCAAGTTCATCATCTACTCGGACCACAAAGCCTT
GGAGAGCATTGGCAAGGTTGGGGAACACAACGCTAGGGTGCAACGATGGC
TGGAATTCCTGTCCAACTTCACCTACACCCTGAAATATCGGAAAGGTTCG
GCAAACGGCAACGCGGATTTTCTTTCGCGGTTGCCTTTACCAGCACAAGA
CACGGACAAAACCGGCCCCGACTGCATTGATGGTGTCGATCAAGCGGGTG
TTTTCCTCATTTGGGCTTGCGGGCGCAACTATCACTCGTCGTCTACGCCG
GAGGTCCCGCTCGACAAACAACCGGACCGCCGGTCTGCTGCCGCCATCCG
CAACGCCGGCACCGGCGTTTTCGTCGACTGCTCTTGCGCCACCGGTGTCT
TCGCCATCAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTCTCTACAGGT
TTCGCGCGGGACTTCGCCACTCACGATGTCCCCTTCGCGGACATCACCAC
AGACTGCGGCTGCCCCAGTCGCTGA back to topprotein sequence of EsuBft811_4a-0001 >EsuBft811_4 ID=EsuBft811_4|Name=EsuBft811_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=674bp
MASANIDPAGAAALRPPSGSRRVATSPAPASLSGSSPSEKRTRPLEPPPP
VPGARSLPLRPAPAPPFDDKCEYASDDVLLFWKPPSVFSQWTPSAFDVLG
VRYSCGEPLMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGRNVRPFDYAE
WEHRREEIVLTGSYAKFARNHDMKHHLLETGTRLLAEASPFDRVWGIGMS
ACFPDASDSSKWAASGKNLLGKALKEVRRLLRDHPLSGEDFPASNSPTPP
ISQPPLHGHRRIHEVATATGCAELEPGDVIGVSAAPLLRVPVETLKAAPS
SIPTGPTTSTSPPRVNAVGPKSGTHRSPDPASAPPPPKPPPQELLDRFSE
AQRSSFMRVWARLPGRSPLHHARIVSIYYRKFLKNLATKVRPLNSLLKQG
VPFKYTPGMVKVVNTLLSELARPPILVFPDWAAIEDNSRPLRLCSDACID
GFGSSLEQGQLDGLVRPNVYISRATLPAERNWTVLDLEAGGIVWAIKCLR
GYLWSTKFIIYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGS
ANGNADFLSRLPLPAQDTDKTGPDCIDGVDQAGVFLIWACGRNYHSSSTP
EVPLDKQPDRRSAAAIRNAGTGVFVDCSCATGVFAISGAPCIPDFAFSTG
FARDFATHDVPFADITTDCGCPSR back to topmRNA from alignment at Scaffold_230:293234..296693+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft811_4a-0001 ID=EsuBft811_4a-0001|Name=EsuBft811_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3460bp|location=Sequence derived from alignment at Scaffold_230:293234..296693+ (Ectocarpus subulatus male Bft15b)
ATGGCCTCTGCTAACATTGACCCCGCCGGAGCCGCCGCCCTAAGGCCGCC
CTCCGGATCACGGCGCGTTGCGACTTCGCCCGCTCCTGCCTCGCTTTCTG
GGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCTTGAACCACCCCCGCCT
GTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGCACCGGCTCCGCCGTT
TGATGACAAGTGCGAGTACGCTTCGGATGACGTCCTTCTTTTCTGGAAAC
CTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCTTTTGACGTACTGGGG
GTACGTTATTCATGTGGTGAGCCACTTATGATGTCTGAAAAAGCGAAGTT
GTTTGGAGATATGACGTCGTATGACAAAATTATGGCTGCAACAGATCCTA
AGACACACAAGTTTTTGGGTCGAAACGTGCGTCCTTTCGACTATGCTGAA
TGGGAGCATCGTCGTGAAGAGATCGTGCTCACGGGGTCGTATGCCAAGTT
TGCTCGAAACCATGATATGAAACATCATCTACTGGAGACGGGTACCCGCC
TCCTTGCAGAAGCCAGCCCCTTCGATCGTGTTTGGGGTATCGGCATGTCT
GCATGCTTTCCAGATGCTAGCGATTCATCCAAGTGGGCGGCTAGCGGTAA
AAACCTGTTGGGAAAAGCTTTGAAGGAAGTTCGACGCCTTTTGCGTGATC
ATCCCCTCTCTGGCGAAGATTTCCCCGCTTCCAATTCTCCCACGCCCCCC
ATTTCGCAGCCTCCTCTCCATGGACATCGACGCATCCATGAGGTTGCTAC
TGCTACAGGTTCTTCGCTACGGAAGGACCCGGGCGAAGACCCAGCTTGTC
TACGTTTGGACGCTCCGGGGGACCATGCTCCTGGCGTTCATCTGGTGGTA
TCGACATCCGCTTGTGCAGACCAGCCTGCTCTTCTCGAACACGGGCCCGA
TCTGGTCGGCGGCACGCTCCTGTTGGACTCGCACTCATACACCACCCGGG
TCCTGCTGCATGGACGACCTACAGCCACTTCTCAACTCGCGCGAGTGGTG
CTTCTGGACTCTGGGTCTCCTGCATCCTTCGTTTCCGACTCCGTGGTCAC
CGCCATGATAGCTGCCGGAGCCCTGACAGCTGGCAGCGTTCGTGTTTCGC
CCTCTCGTCGTTGGGGTGGGTTTGCTGATGGANAATTCGTCTCACCGTAA
TTTTCTCCATGGAGATAGACCTACCGCTTCCCTGGCGGTCTGGGTCTGTG
TGGTTCCAGACGCCGCCATGGGGCACGCCGTGCTTCTGGGTCGTGATAGC
TGGATGCTCTTCAACTCTCGCGTGTTCACCACCCTCCCCCACCCTGGACC
GGACGGCCGGGTTATGGGCGAGCTCACGCTCTCTCCGCATTTTACACCTG
GCGCTTGCGTTTACGCTACACACGACGACGCTCCTGCCTCCTCGTTTCAC
CTTAAATATGCAGGGAGCTTGGGAATTTCTTTGGGGCCGGAGCCCGCACT
CGTTGAGGTGTACATCGTTCGTTCTTCTGGCATGCCTGCGCTGATTGGAG
AGTATCTGGTATCGTTAAAACACGAAGTGGGTGCGCTTTCGTCCCCAGAT
GCGTTCGGTTCCAATGGTCTCCAGCGTATTCCCCTTGCAGGTTGTGCCGA
GCTCGAGCCGGGAGACGTAATTGGAGTGTCTGCCGCGCCGCTACTACGAG
TACCGGTGGAAACCCTGAAGGCGGCACCATCTTCGATTCCTACCGGCCCC
ACAACATCTACATCACCACCTCGGGTCAACGCCGTTGGCCCCAAGTCCGG
GACTCACCGCTCTCCGGACCCAGCCTCTGCCCCGCCTCCTCCGAAGCCGC
CTCCACAAGAACTACTCGACCGCTTCTCTGAGGCACAGCGCTCCAGCTTC
ATGCGCGTGTGGGCTAGGCTGCCCGTACATATGCACGACATCGCTTTCGT
TCTACACAATCCGGGATGGACACCGGAGGCTATTGATCGTTTGGCCGACG
CCCTTGTGGAGTATTCTGACGTGTTCTCTACTTCGAAAACCGATTTTGGT
TCCTGCATCATCATGCCGTTCACTCTTGGTGTCCCAGCAGGGACGAAGCC
CGTTGCATCACGCCCGTATCGTATCAATATACTACCGGAAATTCCTCAAG
AATCTCGCCACCAAGGTGCGGCCTCTCAACTCACTTCTCAAACAAGGCGT
CCCCTTCAAGTACACCCCGGGCATGGTAAAGGTTGTCAATACGTTGTTAA
GCGAACTCGCTCGCCCCCCGATTTTGGTCTTCCCGGATTGGGCAGCAATC
GAGGACAACAGCCGTCCTCTTCGTTTGTGTTCCGACGCGTGCATCGACGG
TTTTGGCTCCTCCTTGGAACAAGGACAGCTCGATGGCTTGGTGAGACCCA
ACGTGTACATCAGCCGCGCTACTCTTCCTGCGGAGCGTAACTGGACCGTT
TTGGATCTGGAGGCTGGTGGCATTGTTTGGGCCATCAAATGCCTTCGCGG
TTATCTGTGGTCGACCAAGTTCATCATCTACTCGGACCACAAAGCCTTGG
AGAGCATTGGCAAGGTTGGGGAACACAACGCTAGGGTGCAACGATGGCTG
GAATTCCTGTCCAACTTCACCTACACCCTGAAATATCGGAAAGGTTCGGC
AAACGGCAACGCGGATTTTCTTTCGCGGTTGCCTTTACCAGCACAAGACA
CGGACAAAACCGGCCCCGACTGCATTGATGGTGTCGATCAAGCGGGTGTT
TTCCTCATTTGGGCTTGCGGGCGCAACTATCACTCGTCGTCTACGCCGGA
GGTCGGTTTGGGTGGGCTCCGTCCTCCTTGCACGGCGGGAGTCGTTTCGC
CCCCAGCGTTGCAGCCCTCCGATTTTGGGGATTTTTGCCGACATCACCCG
CGTCGGTTGGATGCTCTGACGGACTCAACGATTGCCCGCGAGAATTCTCG
GCGGTCCCCGGGGGTCTTCATCGTCTCGCCTGTTCTCGCATCTTCAGGGC
CTGCTTCCTCATTGACTTCGGATGCCTCCCGCGTGATGTCTCTTGCCGCG
TCTTTGGCGACTAGATATGTGCACGTTTTGTGTCCGCTTCCGGAGCAGGG
ACCGCTCATTTGTTCACGGACTCGGGCCAAAACTACCGCAGTTTCCGGAG
GCACCGTCACCGGTCCCGCTTATTTCGGACGCCAGCCGCGGGCTACCATT
GTCCCTCGGACATCGTCGCCTGCCCGTCGCTCTAGCAGGTCCCGCTCGAC
AAACAACCGGACCGCCGGTCTGCTGCCGCCATCCGCAACGCCGGCACCGG
CGTTTTCGTCGACTGCTCTTGCGCCACCGGTGTCTTCGCCATCAGCGGCG
CGCCCTGCATCCCCGACTTCGCCTTCTCTACAGGTTTCGCGCGGGACTTC
GCCACTCACGATGTCCCCTTCGCGGACATCACCACAGACTGCGGCTGCCC
CAGTCGCTGA back to topCoding sequence (CDS) from alignment at Scaffold_230:293234..296693+ >EsuBft811_4a-0001 ID=EsuBft811_4a-0001|Name=EsuBft811_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2025bp|location=Sequence derived from alignment at Scaffold_230:293234..296693+ (Ectocarpus subulatus male Bft15b)
ATGGCCTCTGCTAACATTGACCCCGCCGGAGCCGCCGCCCTAAGGCCGCC
CTCCGGATCACGGCGCGTTGCGACTTCGCCCGCTCCTGCCTCGCTTTCTG
GGTCCTCCCCGTCGGAGAAGAGGACCCGTCCGCTTGAACCACCCCCGCCT
GTGCCTGGTGCCCGCTCTTTGCCCCTTCGCCCTGCACCGGCTCCGCCGTT
TGATGACAAGTGCGAGTACGCTTCGGATGACGTCCTTCTTTTCTGGAAAC
CTCCGTCTGTGTTCTCGCAATGGACTCCTTCGGCTTTTGACGTACTGGGG
GTACGTTATTCATGTGGTGAGCCACTTATGATGTCTGAAAAAGCGAAGTT
GTTTGGAGATATGACGTCGTATGACAAAATTATGGCTGCAACAGATCCTA
AGACACACAAGTTTTTGGGTCGAAACGTGCGTCCTTTCGACTATGCTGAA
TGGGAGCATCGTCGTGAAGAGATCGTGCTCACGGGGTCGTATGCCAAGTT
TGCTCGAAACCATGATATGAAACATCATCTACTGGAGACGGGTACCCGCC
TCCTTGCAGAAGCCAGCCCCTTCGATCGTGTTTGGGGTATCGGCATGTCT
GCATGCTTTCCAGATGCTAGCGATTCATCCAAGTGGGCGGCTAGCGGTAA
AAACCTGTTGGGAAAAGCTTTGAAGGAAGTTCGACGCCTTTTGCGTGATC
ATCCCCTCTCTGGCGAAGATTTCCCCGCTTCCAATTCTCCCACGCCCCCC
ATTTCGCAGCCTCCTCTCCATGGACATCGACGCATCCATGAGGTTGCTAC
TGCTACAGGTTGTGCCGAGCTCGAGCCGGGAGACGTAATTGGAGTGTCTG
CCGCGCCGCTACTACGAGTACCGGTGGAAACCCTGAAGGCGGCACCATCT
TCGATTCCTACCGGCCCCACAACATCTACATCACCACCTCGGGTCAACGC
CGTTGGCCCCAAGTCCGGGACTCACCGCTCTCCGGACCCAGCCTCTGCCC
CGCCTCCTCCGAAGCCGCCTCCACAAGAACTACTCGACCGCTTCTCTGAG
GCACAGCGCTCCAGCTTCATGCGCGTGTGGGCTAGGCTGCCCGGACGAAG
CCCGTTGCATCACGCCCGTATCGTATCAATATACTACCGGAAATTCCTCA
AGAATCTCGCCACCAAGGTGCGGCCTCTCAACTCACTTCTCAAACAAGGC
GTCCCCTTCAAGTACACCCCGGGCATGGTAAAGGTTGTCAATACGTTGTT
AAGCGAACTCGCTCGCCCCCCGATTTTGGTCTTCCCGGATTGGGCAGCAA
TCGAGGACAACAGCCGTCCTCTTCGTTTGTGTTCCGACGCGTGCATCGAC
GGTTTTGGCTCCTCCTTGGAACAAGGACAGCTCGATGGCTTGGTGAGACC
CAACGTGTACATCAGCCGCGCTACTCTTCCTGCGGAGCGTAACTGGACCG
TTTTGGATCTGGAGGCTGGTGGCATTGTTTGGGCCATCAAATGCCTTCGC
GGTTATCTGTGGTCGACCAAGTTCATCATCTACTCGGACCACAAAGCCTT
GGAGAGCATTGGCAAGGTTGGGGAACACAACGCTAGGGTGCAACGATGGC
TGGAATTCCTGTCCAACTTCACCTACACCCTGAAATATCGGAAAGGTTCG
GCAAACGGCAACGCGGATTTTCTTTCGCGGTTGCCTTTACCAGCACAAGA
CACGGACAAAACCGGCCCCGACTGCATTGATGGTGTCGATCAAGCGGGTG
TTTTCCTCATTTGGGCTTGCGGGCGCAACTATCACTCGTCGTCTACGCCG
GAGGTCCCGCTCGACAAACAACCGGACCGCCGGTCTGCTGCCGCCATCCG
CAACGCCGGCACCGGCGTTTTCGTCGACTGCTCTTGCGCCACCGGTGTCT
TCGCCATCAGCGGCGCGCCCTGCATCCCCGACTTCGCCTTCTCTACAGGT
TTCGCGCGGGACTTCGCCACTCACGATGTCCCCTTCGCGGACATCACCAC
AGACTGCGGCTGCCCCAGTCGCTGA back to top
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