EsuBft811_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft811_12a-0001
Unique Name	EsuBft811_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Properties


Property Name	Value
Seed ortholog	2880.D7FT49
ProteomeId	EsuBft811_12
Protein domains	SSF56672
Protein domains	PTHR11076
Protein domains	IPR017963
Protein domains	G3DSA
Protein domains	IPR001126
Owner	apollo_admin@sb-roscoff.fr
Note	dna polymerase eta os:arabidopsis thaliana gn:polh pe:1 sv:1 [Automatic annotation]
Nb exon	6
Max annot lvl	2759\|Eukaryota
Length	1366
Hectar predicted targeting category	other localisation
Evalue	1e-189
EggNOG OGs	COG0389@1\|root,KOG2095@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Preferred name	POLH
KEGG ko	ko:K03509,ko:K03510
KEGG Pathway	ko01524,ko03460,map01524,map03460
GOs	GO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006290,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0007346,GO:0008080,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009790,GO:0009792,GO:0009987,GO:0010224,GO:0010225,GO:0010564,GO:0010948,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019985,GO:0022402,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035861,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045786,GO:0045787,GO:0045930,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051716,GO:0051726,GO:0052858,GO:0060255,GO:0065007,GO:0070013,GO:0070601,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071840,GO:0071897,GO:0071960,GO:0071962,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0104004,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901976,GO:1901977,GO:1903047,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2001020,GO:2001021
EC	2.7.7.7
Description	DNA synthesis involved in DNA repair
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03400

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_230:360209..363388+
coding sequence from alignment at Scaffold_230:360209..363388+

spliced messenger RNA

>EsuBft811_12a-0001 ID=EsuBft811_12a-0001|Name=EsuBft811_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1366bp|location=Sequence derived from alignment at Scaffold_230:360209..363388+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGTGTGCTGCGCGGTGCAACCGGTAAGTTGGTACCGCGGGAGAGGCAG
TTTATCGTGCCGCTGAGTGTGGTCAGGACTGAAAGGAGCGACGATTCAGG
AAGAGCTGGTCGATTGCGAAGAAAGAAGCTGTTGTTGTTGAATTGAGAGG
GACGGAAAGGGTCGGGCGTCGAGGCTGTGTGACTCCCGACTGCTGCACCT
CGTCAGCAGCAGGCCTTCGCGACGACGGCTGGTTGGTGCTAGCAAGTGCC
CGTTGGACGCCCCTACCCTTCCCTGCTTTCATCTGAGAAGGACGAAATCC
AGCAGGAACCTAGAAGAGTTGCGAGAATCGTGCGCGCGCGTTGTCCAGCA
AATTTGAAATTTGAACATCTCCAAATTCTCTGCTGGAAGGAGTCATCAGG
ATGGCGACATCAGCAACGAAGTCGTCAGCGGCGAAAATTTCCCCAGCAGC
AGGAAACGCGTGGACGGGGGGGTCCGCTGTGTCTGCCGGTGGGGGGCGTG
GGCTTGCGCCGGCGTTGAAGGAACCACTGAGAGTCATCGCGCACATCGAT
ATGGATGCCTTCTACGCTCAGATAGAGCAGCTCCGAGACGCCGCCTTGAC
GGGCAGGCCTGTCGTGGTGGTTCAGTACCCCACATCTAATCACGACATCA
AGGACATGGAGCCGGACGACAACCGCGTGGTGGAAGGTTCTGCTAGCTCC
ATCATCGCCGTCAGCTACGAGGCTCGTCCTTTCGGGGTGAAGCGCGGCAT
GAAGGCCGGTGACGCTCGCAAGGTTTGCCCAGAGCTGGCCCTGGTGCAGG
TGCCCACCCGCAACGGCAAGGCGGACATCTCGCTCTACAGACACGCGGGC
GAGAGAGTGGTGGCCGTCCTCGAGCGCGCGGGGGGTGCGTTAACCACCGT
CGAAAAGGCTTCGATCGACGAGGTTTACGTCGACGTTACGCGCGCTGCGC
ATGCTCTCCTCTCGAGCCTTGGCAGCCACAACAGCGAAAGCAGCGGCAAT
CAGCAGCAGCAGCATCAGCAGCAAGATGAGGAGGGGAAAGGTACAAGCAC
TGCAGAGGGAAACAAAGCCCCGCCAGCAGCGTCGCCGAGGGAGGATGGGG
GGGTCAGCAAGAAGCGATGGGAGGACATTGGTGAGGGGGGGTGGACCGCC
GTCTTGTCGGCGACTGCGACCACTCATGTTGCCGGCCTGAGCGACGACGA
TGCATCGAAGGAGCAGCAACTCGCTGACGGAGTTTCCTGGTGGGCCAGGA
CTAAAGAGGCGTTCACGCGAGACCAGGAGCTCCTCAGCTGCGGCGCGGCG
GTGGTTTCGAGGCTCAGGGCCGCCGTGCGCTCCGAGCTCGGCTACTCCTG
TACCGCAGAGGGATAG

protein sequence of EsuBft811_12a-0001

>EsuBft811_12 ID=EsuBft811_12|Name=EsuBft811_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=321bp
MATSATKSSAAKISPAAGNAWTGGSAVSAGGGRGLAPALKEPLRVIAHID
MDAFYAQIEQLRDAALTGRPVVVVQYPTSNHDIKDMEPDDNRVVEGSASS
IIAVSYEARPFGVKRGMKAGDARKVCPELALVQVPTRNGKADISLYRHAG
ERVVAVLERAGGALTTVEKASIDEVYVDVTRAAHALLSSLGSHNSESSGN
QQQQHQQQDEEGKGTSTAEGNKAPPAASPREDGGVSKKRWEDIGEGGWTA
VLSATATTHVAGLSDDDASKEQQLADGVSWWARTKEAFTRDQELLSCGAA
VVSRLRAAVRSELGYSCTAEG

mRNA from alignment at Scaffold_230:360209..363388+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft811_12a-0001 ID=EsuBft811_12a-0001|Name=EsuBft811_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3180bp|location=Sequence derived from alignment at Scaffold_230:360209..363388+ (Ectocarpus subulatus male Bft15b)
TTTGTGTGCTGCGCGGTGCAACCGGTAAGTTGGTACCGCGGGAGAGGCAG
TTTATCGTGCCGCTGAGTGTGGTCAGGACTGAAAGGAGCGACGATTCAGG
AAGAGCTGGTCGATTGCGAAGAAAGAAGCTGTTGTTGTTGAATTGAGAGG
GACGGAAAGGGTCGGGCGTCGAGGCTGTGTGACTCCCGACTGCTGCACCT
CGTCAGCAGCAGGCCTTCGCGACGACGGCTGGTTGGTGCTAGCAAGTGCC
CGTTGGACGCCCCTACCCTTCCCTGCTTTCATCTGAGAAGGACGAAATCC
AGCAGGAACCTAGAAGAGTTGCGAGAATCGTGCGCGCGCGTTGTCCAGCA
AATTTGAAATTTGAACATCTCCAAATTCTCTGCTGGAAGGAGTCATCAGG
ATGGCGACATCAGCAACGAAGTCGTCAGCGGCGAAAATTTCCCCAGCAGC
AGGAAACGCGTGGACGGGGGGGTCCGCTGTGTCTGCCGGTGGGGGGCGTG
GGCTTGCGCCGGCGTTGAAGGAACCACTGAGAGTCATCGCGCACATCGAT
ATGGATGCCTTCTACGCTCAGATAGAGCAGGTGAAGAAGGCTTTGAATGG
GATGGACCGTCCACCACATGGCACATGCACGTGAATGAATGCAAACAGTG
GTGCTGTCTCCCGTTGTTGTACTATACGAAGCACCTTGCTGCTGTGCTTC
CATCTTTGTACTGCTCCAGTACCAGAAGGTTCTCTTATTTTGAAGACTCA
CACCAACACAAGAAACGCGGTCATACGAAACGCGTTCTTCACGGAAAGCC
AAACAGGCTGTGCTTTCAAGCGTACGGAGGGCACGAGCTGGATTGAGGTC
TATCCACCCCCATCAGTTATCCCTGACACAGGCTCATCTATCCATCCCAC
CCCATCTTGAACGTTCGCCGAAACGGAAAAAAGCTCCGAGACGCCGCCTT
GACGGGCAGGCCTGTCGTGGTGGTTCAGTACCCCACATCTAATCACGACA
TCAAGGACATGGAGCCGGACGACAACCGCGTGGTGGAAGGTTCTGCTAGC
TCCATCATCGCCGTCAGCTACGAGGCTCGTCCTTTCGGGGTGAGAGGATT
GCACGCCTATCTTTCTAGTGACACGCCAAAGAGTTGACACGAGTCATGAA
TCGGGGGTTGCTTGCGCACAGGCAGTCTTAAACCGCTTATGACAAGTTGA
CGAGACGCCGTTACTTACGTACATGTAGTCGGGTCTGTAGACTATATAGG
TGACTGTTCCAGGTGTTCTCCATAGGTATCGATGGTGTAACGCGTCCGAG
GATAATTGTTCGGAGCCCCCTACGTGAGCTGGCCAGCTCGGGGGCAGCCC
CTGCTCTTTCCTTCCACCCGCTTATTCTATCAAGCATCACAGCCAGCGAA
AGGATAACGGGCGTACCAACTTGGGGTGTACGAACATGCTCTGGGGGGTC
TTGTACGTGCATCGTCAACGCGCACATTCCTCCACCCATGGACGGTCGCC
AACGTTAGCGCAGATTTCGCCTCTCACAAGTCACAATCACCGTCTGCGGT
CTAGATTGCGGCCTGTGGTTTAACACATGGCGGAAATATCTGTCAACTCA
ACCGAAGATGAAGCTTCGGTGTTTAAACTCATTTTTCTATGAGATGGAAG
AGGCGTGCCCGATTTGTAAGAGGTTAGCAGCCAGGGTGCCGAAAGACGCT
GTCATTCCATACCGGTAGCGTTGACGCATGTGACGAAGAAGCCAATGTGC
CCTCGAAAGCTTCCCGAGCCGTAGTTAAACTTTTGCTATTATGTAATCTT
TATACATACACGTCGAAAATCAGGTGAAGCGCGGCATGAAGGCCGGTGAC
GCTCGCAAGGTTTGCCCAGAGCTGGCCCTGGTGCAGGTGCCCACCCGCAA
CGGCAAGGCGGACATCTCGCTCTACAGGTACGCGCGAGGGGGGGGGCGGG
GGGGGGATCGTCGAGGACTGCTTGCGTGGCTTTTTCGGTCGCCATTGTCG
GCACAGACCTAACCTACCGATTCTGGCGATCGAGCTATCGAGTAGACCCA
GGAAAACTACTCGGAAATCCATCGCTCAGTTTGATATGAGGCACCTCCCA
TACCAACTACTCCGTCTTCAGCCTACCCCCACCTGTCTGCGTCTTTTCTC
TTGTACCGCCCCGCCCCGCGCTTGCTAGACACGCGGGCGAGAGAGTGGTG
GCCGTCCTCGAGCGCGCGGGGGGTGCGTTAACCACCGTCGAAAAGGCTTC
GATCGACGAGGTTTACGTCGACGTTACGCGCGCTGCGCATGCTCTCCTCT
CGAGCCTTGGCAGCCACAACAGCGAAAGCAGCGGCAATCAGCAGCAGCAG
CATCAGCAGCAAGATGAGGAGGGGAAAGGTACAAGCACTGCAGAGGGAAA
CAAAGCCCCGCCAGCAGCGTCGCCGAGGGAGGATGGGGGGGTCAGCAAGA
AGCGATGGGAGGACATTGGTGAGGGGGGGTGGACCGCCGTCTTGTCGGCG
ACTGCGACCACTCATGTGAGTTTCAACGCGGCCGATTGCCGGACGGACGT
TTCAATGTATCGCTAATGTCTACCAGTCCGTATTCAGACAGAAACCTATA
TTTTTGAAGACACGCTCGGTCATCGGGGGGATGTCTCGATGTTATTTTGT
CGTGACTACCGTCACCAATTCAGACGAAAAACAATGTTTTCGAGACACGT
TCGATTCGCACGGGCCACGGCCTTGACGCCATTCTCTTTAACACCAGTGG
CATCGCAGCTTTTGCCGGAGGCACATCTCGAAGCCAGACACCCGTCACGA
TTTCACACGGGATTCTCTACATACTTGCGCTCAAACAGACTTGTTCTCTC
TTCCTCTTCGCTACTCTCTCTGTCTGCCACGGCTGACTATTTTTTCTGTC
GAATAATGTTCTGGGCCGAAACCGAAGGTTGCCGGCCTGAGCGACGACGA
TGCATCGAAGGAGCAGCAACTCGCTGACGGAGTTTCCTGGTGGGCCAGGA
CTAAAGAGGCGTTCACGCGAGACCAGGAGCTCCTCAGCTGCGGCGCGGCG
GTGGTTTCGAGGCTCAGGGCCGCCGTGCGCTCCGAGCTCGGCTACTCCTG
TACCGCAGGTGTGTGTGTGTCACAGAGAGGGAGGATAGACAGACATACAG
ACGAACATAGAGGGAGAGACAGAGGGATAG

Coding sequence (CDS) from alignment at Scaffold_230:360209..363388+

>EsuBft811_12a-0001 ID=EsuBft811_12a-0001|Name=EsuBft811_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=966bp|location=Sequence derived from alignment at Scaffold_230:360209..363388+ (Ectocarpus subulatus male Bft15b)
ATGGCGACATCAGCAACGAAGTCGTCAGCGGCGAAAATTTCCCCAGCAGC
AGGAAACGCGTGGACGGGGGGGTCCGCTGTGTCTGCCGGTGGGGGGCGTG
GGCTTGCGCCGGCGTTGAAGGAACCACTGAGAGTCATCGCGCACATCGAT
ATGGATGCCTTCTACGCTCAGATAGAGCAGCTCCGAGACGCCGCCTTGAC
GGGCAGGCCTGTCGTGGTGGTTCAGTACCCCACATCTAATCACGACATCA
AGGACATGGAGCCGGACGACAACCGCGTGGTGGAAGGTTCTGCTAGCTCC
ATCATCGCCGTCAGCTACGAGGCTCGTCCTTTCGGGGTGAAGCGCGGCAT
GAAGGCCGGTGACGCTCGCAAGGTTTGCCCAGAGCTGGCCCTGGTGCAGG
TGCCCACCCGCAACGGCAAGGCGGACATCTCGCTCTACAGACACGCGGGC
GAGAGAGTGGTGGCCGTCCTCGAGCGCGCGGGGGGTGCGTTAACCACCGT
CGAAAAGGCTTCGATCGACGAGGTTTACGTCGACGTTACGCGCGCTGCGC
ATGCTCTCCTCTCGAGCCTTGGCAGCCACAACAGCGAAAGCAGCGGCAAT
CAGCAGCAGCAGCATCAGCAGCAAGATGAGGAGGGGAAAGGTACAAGCAC
TGCAGAGGGAAACAAAGCCCCGCCAGCAGCGTCGCCGAGGGAGGATGGGG
GGGTCAGCAAGAAGCGATGGGAGGACATTGGTGAGGGGGGGTGGACCGCC
GTCTTGTCGGCGACTGCGACCACTCATGTTGCCGGCCTGAGCGACGACGA
TGCATCGAAGGAGCAGCAACTCGCTGACGGAGTTTCCTGGTGGGCCAGGA
CTAAAGAGGCGTTCACGCGAGACCAGGAGCTCCTCAGCTGCGGCGCGGCG
GTGGTTTCGAGGCTCAGGGCCGCCGTGCGCTCCGAGCTCGGCTACTCCTG
TACCGCAGAGGGATAG