EsuBft811_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft811_12a-0001
Unique NameEsuBft811_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:360209..363388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FT49
ProteomeIdEsuBft811_12
Protein domainsSSF56672
Protein domainsPTHR11076
Protein domainsIPR017963
Protein domainsG3DSA
Protein domainsIPR001126
Ownerapollo_admin@sb-roscoff.fr
Notedna polymerase eta os:arabidopsis thaliana gn:polh pe:1 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1366
Hectar predicted targeting categoryother localisation
Evalue1e-189
EggNOG OGsCOG0389@1|root,KOG2095@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred namePOLH
KEGG koko:K03509,ko:K03510
KEGG Pathwayko01524,ko03460,map01524,map03460
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006290,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0007346,GO:0008080,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009790,GO:0009792,GO:0009987,GO:0010224,GO:0010225,GO:0010564,GO:0010948,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019985,GO:0022402,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035861,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045786,GO:0045787,GO:0045930,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051716,GO:0051726,GO:0052858,GO:0060255,GO:0065007,GO:0070013,GO:0070601,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071840,GO:0071897,GO:0071960,GO:0071962,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0104004,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901976,GO:1901977,GO:1903047,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2001020,GO:2001021
EC2.7.7.7
DescriptionDNA synthesis involved in DNA repair
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Cross References
External references for this mRNA
DatabaseAccession
GO0003887
GO0071897
GO0043231
GO0006281
GO0003684
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft811_12aEsuBft811_12aEctocarpus subulatus male Bft15bgeneScaffold_230 360209..363388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_12a-0001EsuBft811_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 360609..363388 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_12a-0001-exonagat-exon-27574Ectocarpus subulatus male Bft15bexonScaffold_230 360209..360788 +
EsuBft811_12a-0001-exonagat-exon-27575Ectocarpus subulatus male Bft15bexonScaffold_230 361142..361297 +
EsuBft811_12a-0001-exonagat-exon-27572Ectocarpus subulatus male Bft15bexonScaffold_230 362032..362135 +
EsuBft811_12a-0001-exonagat-exon-27573Ectocarpus subulatus male Bft15bexonScaffold_230 362387..362723 +
EsuBft811_12a-0001-exonagat-exon-27576Ectocarpus subulatus male Bft15bexonScaffold_230 363136..363316 +
EsuBft811_12a-0001-exonEsuBft811_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 363381..363388 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_12a-0001-exonagat-five_prime_utr-14095Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_230 360209..360608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_12a-0001-cdsEsuBft811_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 360609..360788 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft811_12a-0001 ID=EsuBft811_12a-0001|Name=EsuBft811_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1366bp|location=Sequence derived from alignment at Scaffold_230:360209..363388+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGTGTGCTGCGCGGTGCAACCGGTAAGTTGGTACCGCGGGAGAGGCAG
TTTATCGTGCCGCTGAGTGTGGTCAGGACTGAAAGGAGCGACGATTCAGG
AAGAGCTGGTCGATTGCGAAGAAAGAAGCTGTTGTTGTTGAATTGAGAGG
GACGGAAAGGGTCGGGCGTCGAGGCTGTGTGACTCCCGACTGCTGCACCT
CGTCAGCAGCAGGCCTTCGCGACGACGGCTGGTTGGTGCTAGCAAGTGCC
CGTTGGACGCCCCTACCCTTCCCTGCTTTCATCTGAGAAGGACGAAATCC
AGCAGGAACCTAGAAGAGTTGCGAGAATCGTGCGCGCGCGTTGTCCAGCA
AATTTGAAATTTGAACATCTCCAAATTCTCTGCTGGAAGGAGTCATCAGG
ATGGCGACATCAGCAACGAAGTCGTCAGCGGCGAAAATTTCCCCAGCAGC
AGGAAACGCGTGGACGGGGGGGTCCGCTGTGTCTGCCGGTGGGGGGCGTG
GGCTTGCGCCGGCGTTGAAGGAACCACTGAGAGTCATCGCGCACATCGAT
ATGGATGCCTTCTACGCTCAGATAGAGCAGCTCCGAGACGCCGCCTTGAC
GGGCAGGCCTGTCGTGGTGGTTCAGTACCCCACATCTAATCACGACATCA
AGGACATGGAGCCGGACGACAACCGCGTGGTGGAAGGTTCTGCTAGCTCC
ATCATCGCCGTCAGCTACGAGGCTCGTCCTTTCGGGGTGAAGCGCGGCAT
GAAGGCCGGTGACGCTCGCAAGGTTTGCCCAGAGCTGGCCCTGGTGCAGG
TGCCCACCCGCAACGGCAAGGCGGACATCTCGCTCTACAGACACGCGGGC
GAGAGAGTGGTGGCCGTCCTCGAGCGCGCGGGGGGTGCGTTAACCACCGT
CGAAAAGGCTTCGATCGACGAGGTTTACGTCGACGTTACGCGCGCTGCGC
ATGCTCTCCTCTCGAGCCTTGGCAGCCACAACAGCGAAAGCAGCGGCAAT
CAGCAGCAGCAGCATCAGCAGCAAGATGAGGAGGGGAAAGGTACAAGCAC
TGCAGAGGGAAACAAAGCCCCGCCAGCAGCGTCGCCGAGGGAGGATGGGG
GGGTCAGCAAGAAGCGATGGGAGGACATTGGTGAGGGGGGGTGGACCGCC
GTCTTGTCGGCGACTGCGACCACTCATGTTGCCGGCCTGAGCGACGACGA
TGCATCGAAGGAGCAGCAACTCGCTGACGGAGTTTCCTGGTGGGCCAGGA
CTAAAGAGGCGTTCACGCGAGACCAGGAGCTCCTCAGCTGCGGCGCGGCG
GTGGTTTCGAGGCTCAGGGCCGCCGTGCGCTCCGAGCTCGGCTACTCCTG
TACCGCAGAGGGATAG
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protein sequence of EsuBft811_12a-0001

>EsuBft811_12 ID=EsuBft811_12|Name=EsuBft811_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=321bp
MATSATKSSAAKISPAAGNAWTGGSAVSAGGGRGLAPALKEPLRVIAHID
MDAFYAQIEQLRDAALTGRPVVVVQYPTSNHDIKDMEPDDNRVVEGSASS
IIAVSYEARPFGVKRGMKAGDARKVCPELALVQVPTRNGKADISLYRHAG
ERVVAVLERAGGALTTVEKASIDEVYVDVTRAAHALLSSLGSHNSESSGN
QQQQHQQQDEEGKGTSTAEGNKAPPAASPREDGGVSKKRWEDIGEGGWTA
VLSATATTHVAGLSDDDASKEQQLADGVSWWARTKEAFTRDQELLSCGAA
VVSRLRAAVRSELGYSCTAEG
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mRNA from alignment at Scaffold_230:360209..363388+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft811_12a-0001 ID=EsuBft811_12a-0001|Name=EsuBft811_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3180bp|location=Sequence derived from alignment at Scaffold_230:360209..363388+ (Ectocarpus subulatus male Bft15b)
TTTGTGTGCTGCGCGGTGCAACCGGTAAGTTGGTACCGCGGGAGAGGCAG
TTTATCGTGCCGCTGAGTGTGGTCAGGACTGAAAGGAGCGACGATTCAGG
AAGAGCTGGTCGATTGCGAAGAAAGAAGCTGTTGTTGTTGAATTGAGAGG
GACGGAAAGGGTCGGGCGTCGAGGCTGTGTGACTCCCGACTGCTGCACCT
CGTCAGCAGCAGGCCTTCGCGACGACGGCTGGTTGGTGCTAGCAAGTGCC
CGTTGGACGCCCCTACCCTTCCCTGCTTTCATCTGAGAAGGACGAAATCC
AGCAGGAACCTAGAAGAGTTGCGAGAATCGTGCGCGCGCGTTGTCCAGCA
AATTTGAAATTTGAACATCTCCAAATTCTCTGCTGGAAGGAGTCATCAGG
ATGGCGACATCAGCAACGAAGTCGTCAGCGGCGAAAATTTCCCCAGCAGC
AGGAAACGCGTGGACGGGGGGGTCCGCTGTGTCTGCCGGTGGGGGGCGTG
GGCTTGCGCCGGCGTTGAAGGAACCACTGAGAGTCATCGCGCACATCGAT
ATGGATGCCTTCTACGCTCAGATAGAGCAGGTGAAGAAGGCTTTGAATGG
GATGGACCGTCCACCACATGGCACATGCACGTGAATGAATGCAAACAGTG
GTGCTGTCTCCCGTTGTTGTACTATACGAAGCACCTTGCTGCTGTGCTTC
CATCTTTGTACTGCTCCAGTACCAGAAGGTTCTCTTATTTTGAAGACTCA
CACCAACACAAGAAACGCGGTCATACGAAACGCGTTCTTCACGGAAAGCC
AAACAGGCTGTGCTTTCAAGCGTACGGAGGGCACGAGCTGGATTGAGGTC
TATCCACCCCCATCAGTTATCCCTGACACAGGCTCATCTATCCATCCCAC
CCCATCTTGAACGTTCGCCGAAACGGAAAAAAGCTCCGAGACGCCGCCTT
GACGGGCAGGCCTGTCGTGGTGGTTCAGTACCCCACATCTAATCACGACA
TCAAGGACATGGAGCCGGACGACAACCGCGTGGTGGAAGGTTCTGCTAGC
TCCATCATCGCCGTCAGCTACGAGGCTCGTCCTTTCGGGGTGAGAGGATT
GCACGCCTATCTTTCTAGTGACACGCCAAAGAGTTGACACGAGTCATGAA
TCGGGGGTTGCTTGCGCACAGGCAGTCTTAAACCGCTTATGACAAGTTGA
CGAGACGCCGTTACTTACGTACATGTAGTCGGGTCTGTAGACTATATAGG
TGACTGTTCCAGGTGTTCTCCATAGGTATCGATGGTGTAACGCGTCCGAG
GATAATTGTTCGGAGCCCCCTACGTGAGCTGGCCAGCTCGGGGGCAGCCC
CTGCTCTTTCCTTCCACCCGCTTATTCTATCAAGCATCACAGCCAGCGAA
AGGATAACGGGCGTACCAACTTGGGGTGTACGAACATGCTCTGGGGGGTC
TTGTACGTGCATCGTCAACGCGCACATTCCTCCACCCATGGACGGTCGCC
AACGTTAGCGCAGATTTCGCCTCTCACAAGTCACAATCACCGTCTGCGGT
CTAGATTGCGGCCTGTGGTTTAACACATGGCGGAAATATCTGTCAACTCA
ACCGAAGATGAAGCTTCGGTGTTTAAACTCATTTTTCTATGAGATGGAAG
AGGCGTGCCCGATTTGTAAGAGGTTAGCAGCCAGGGTGCCGAAAGACGCT
GTCATTCCATACCGGTAGCGTTGACGCATGTGACGAAGAAGCCAATGTGC
CCTCGAAAGCTTCCCGAGCCGTAGTTAAACTTTTGCTATTATGTAATCTT
TATACATACACGTCGAAAATCAGGTGAAGCGCGGCATGAAGGCCGGTGAC
GCTCGCAAGGTTTGCCCAGAGCTGGCCCTGGTGCAGGTGCCCACCCGCAA
CGGCAAGGCGGACATCTCGCTCTACAGGTACGCGCGAGGGGGGGGGCGGG
GGGGGGATCGTCGAGGACTGCTTGCGTGGCTTTTTCGGTCGCCATTGTCG
GCACAGACCTAACCTACCGATTCTGGCGATCGAGCTATCGAGTAGACCCA
GGAAAACTACTCGGAAATCCATCGCTCAGTTTGATATGAGGCACCTCCCA
TACCAACTACTCCGTCTTCAGCCTACCCCCACCTGTCTGCGTCTTTTCTC
TTGTACCGCCCCGCCCCGCGCTTGCTAGACACGCGGGCGAGAGAGTGGTG
GCCGTCCTCGAGCGCGCGGGGGGTGCGTTAACCACCGTCGAAAAGGCTTC
GATCGACGAGGTTTACGTCGACGTTACGCGCGCTGCGCATGCTCTCCTCT
CGAGCCTTGGCAGCCACAACAGCGAAAGCAGCGGCAATCAGCAGCAGCAG
CATCAGCAGCAAGATGAGGAGGGGAAAGGTACAAGCACTGCAGAGGGAAA
CAAAGCCCCGCCAGCAGCGTCGCCGAGGGAGGATGGGGGGGTCAGCAAGA
AGCGATGGGAGGACATTGGTGAGGGGGGGTGGACCGCCGTCTTGTCGGCG
ACTGCGACCACTCATGTGAGTTTCAACGCGGCCGATTGCCGGACGGACGT
TTCAATGTATCGCTAATGTCTACCAGTCCGTATTCAGACAGAAACCTATA
TTTTTGAAGACACGCTCGGTCATCGGGGGGATGTCTCGATGTTATTTTGT
CGTGACTACCGTCACCAATTCAGACGAAAAACAATGTTTTCGAGACACGT
TCGATTCGCACGGGCCACGGCCTTGACGCCATTCTCTTTAACACCAGTGG
CATCGCAGCTTTTGCCGGAGGCACATCTCGAAGCCAGACACCCGTCACGA
TTTCACACGGGATTCTCTACATACTTGCGCTCAAACAGACTTGTTCTCTC
TTCCTCTTCGCTACTCTCTCTGTCTGCCACGGCTGACTATTTTTTCTGTC
GAATAATGTTCTGGGCCGAAACCGAAGGTTGCCGGCCTGAGCGACGACGA
TGCATCGAAGGAGCAGCAACTCGCTGACGGAGTTTCCTGGTGGGCCAGGA
CTAAAGAGGCGTTCACGCGAGACCAGGAGCTCCTCAGCTGCGGCGCGGCG
GTGGTTTCGAGGCTCAGGGCCGCCGTGCGCTCCGAGCTCGGCTACTCCTG
TACCGCAGGTGTGTGTGTGTCACAGAGAGGGAGGATAGACAGACATACAG
ACGAACATAGAGGGAGAGACAGAGGGATAG
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Coding sequence (CDS) from alignment at Scaffold_230:360209..363388+

>EsuBft811_12a-0001 ID=EsuBft811_12a-0001|Name=EsuBft811_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=966bp|location=Sequence derived from alignment at Scaffold_230:360209..363388+ (Ectocarpus subulatus male Bft15b)
ATGGCGACATCAGCAACGAAGTCGTCAGCGGCGAAAATTTCCCCAGCAGC
AGGAAACGCGTGGACGGGGGGGTCCGCTGTGTCTGCCGGTGGGGGGCGTG
GGCTTGCGCCGGCGTTGAAGGAACCACTGAGAGTCATCGCGCACATCGAT
ATGGATGCCTTCTACGCTCAGATAGAGCAGCTCCGAGACGCCGCCTTGAC
GGGCAGGCCTGTCGTGGTGGTTCAGTACCCCACATCTAATCACGACATCA
AGGACATGGAGCCGGACGACAACCGCGTGGTGGAAGGTTCTGCTAGCTCC
ATCATCGCCGTCAGCTACGAGGCTCGTCCTTTCGGGGTGAAGCGCGGCAT
GAAGGCCGGTGACGCTCGCAAGGTTTGCCCAGAGCTGGCCCTGGTGCAGG
TGCCCACCCGCAACGGCAAGGCGGACATCTCGCTCTACAGACACGCGGGC
GAGAGAGTGGTGGCCGTCCTCGAGCGCGCGGGGGGTGCGTTAACCACCGT
CGAAAAGGCTTCGATCGACGAGGTTTACGTCGACGTTACGCGCGCTGCGC
ATGCTCTCCTCTCGAGCCTTGGCAGCCACAACAGCGAAAGCAGCGGCAAT
CAGCAGCAGCAGCATCAGCAGCAAGATGAGGAGGGGAAAGGTACAAGCAC
TGCAGAGGGAAACAAAGCCCCGCCAGCAGCGTCGCCGAGGGAGGATGGGG
GGGTCAGCAAGAAGCGATGGGAGGACATTGGTGAGGGGGGGTGGACCGCC
GTCTTGTCGGCGACTGCGACCACTCATGTTGCCGGCCTGAGCGACGACGA
TGCATCGAAGGAGCAGCAACTCGCTGACGGAGTTTCCTGGTGGGCCAGGA
CTAAAGAGGCGTTCACGCGAGACCAGGAGCTCCTCAGCTGCGGCGCGGCG
GTGGTTTCGAGGCTCAGGGCCGCCGTGCGCTCCGAGCTCGGCTACTCCTG
TACCGCAGAGGGATAG
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