EsuBft811_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft811_11a-0001
Unique NameEsuBft811_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:356815..360075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog115417.EPrPW00000022853
ProteomeIdEsuBft811_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl121069|Pythiales
Length161
Hectar predicted targeting categoryother localisation
Evalue4.82e-06
EggNOG OGs2AWQU@1|root,2RZZD@2759|Eukaryota,1MK8T@121069|Pythiales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003580.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft811_11aEsuBft811_11aEctocarpus subulatus male Bft15bgeneScaffold_230 356815..360075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_11a-0001EsuBft811_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 356860..359690 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_11a-0001-exonagat-exon-27568Ectocarpus subulatus male Bft15bexonScaffold_230 356815..356922 -
EsuBft811_11a-0001-exonEsuBft811_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 357145..357270 -
EsuBft811_11a-0001-exonagat-exon-27567Ectocarpus subulatus male Bft15bexonScaffold_230 357522..357788 -
EsuBft811_11a-0001-exonagat-exon-27569Ectocarpus subulatus male Bft15bexonScaffold_230 358009..358180 -
EsuBft811_11a-0001-exonagat-exon-27571Ectocarpus subulatus male Bft15bexonScaffold_230 358555..359327 -
EsuBft811_11a-0001-exonagat-exon-27570Ectocarpus subulatus male Bft15bexonScaffold_230 359628..359725 -
EsuBft811_11a-0001-exonagat-exon-27566Ectocarpus subulatus male Bft15bexonScaffold_230 360001..360075 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_11a-0001-exonagat-three_prime_utr-21824Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 356815..356859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_11a-0001-cdsEsuBft811_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 356860..356922 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_11a-0001-exonagat-five_prime_utr-14093Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_230 359691..359725 -
EsuBft811_11a-0001-exonagat-five_prime_utr-14094Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_230 360001..360075 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft811_11a-0001 ID=EsuBft811_11a-0001|Name=EsuBft811_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1619bp|location=Sequence derived from alignment at Scaffold_230:356815..360075- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCTCCTCCGGACAGCAACCATCTCCCCGGGATCAGCGTTTTACATTTTT
TCATTTCTGCATGCGATCAAGGCAATGTTCGGTCCGCCGGCATCGATCTA
TTGAGTCGTGATGTCGGGGGCTACCATGGCGAGGGCCAACTTCAAGAAGT
ACACAGACATCACGAATCCACTGGCCGCCGGACAGAGCGACACTCCTGAT
GGGAGCAGCAGCACCGACGCGTGGCGCGACTCAGAAAACCTGAAATCGGG
CCGACAAAAGGAGGAGGGGGAGGAGGGGAAGGAGGATGAAGAAGAAGAAG
AGGAGGAGGATCCGTTTGGTCTGGGATCTATCATGTCCAAAGCCGAAAAA
GAGGAAGAGGAAGATGAAGGGCAAGAGGGAGAGGAAGAAGACCCCTTTGG
CCTTGGAGCAATCATGGACGAACCAAACAAGGGCGCTGGCACCTCAACCA
GTAAACGCAGCGGCAGTGGCGCTGACGAACCCCGACAAAAGAAGGCGCAT
AAGACGACAGCTGACGGTACAACCGGCGGATACTTCAAGGGAACGACGTC
GTTAACATCCGCCCAATCTTCAGTGGCGGAGGCATCGCGACAGCCATTTC
GGGCCGCGGACTCCTTTAGCGGCGCGCGGAAGGGCTATGTCTTCCAGAAA
GGTCCTCTGGGTCTAGGTTACTACGCGGACAAGGTTCAAATTCGCGCAAC
AGCGGCTGCGGATGCAGTGGTGGCAGTGTCGAGAGCTAAGAGCCGAGGGC
CAGAGGCACGAGGTTCTGGAGGAAGGCCGGCGACGGAGGGCCGTGAGAAA
AAAAAGCAGGCGGTGGACGTGGCAGCCTCGCTGCAGAAACTCAAGGTGTT
CATTCTGAAGCCCAAGAAAGCGGCGAAAGCGGCGTCGCTCATGGCAGACC
TGATGGAGGCGCATATGCGTCCGGACAACGCCCGGATGTTTTTCAGGGCG
CTCAAGCCCCTTGCGGAAGAACCGGCGGGCGAAGCGGCTCTTGCCGCCGG
GGAAGGAGGCGCTAGAGCTTTTCGAAAGCTCGCGGAGAGGGCATCGGAGT
GGGTTGCAGCGCCGTCGGAGGGGGTGCGGGCGGTGACCTGGGAACTCCTC
TTCGGCTTGCGGCATGACACGAAGACGGATGACTCGTTTACATTTGCTCG
CGCCATCAAGCGCCTCCGTGAAGCCATTGAAGCCTTAGGCGACGTCACGG
GTGGGGGCAAGGCTACCAATGGTACTGCCGGCGAAGGCGACGATGGTGAG
GGAACCGGGTCGGCGAGAGGAAATGGGGCCTCGCTTTCCTTGGAGCGCAA
AGTGGCGCTAATGTTGGTCATGAAAGAGGCGTTCAAGAGCTACCACCTGG
CATGGGCGAGATCGTCGATTGAACCAGCCTTCAAGGCGGCGGCAGATCGC
AGGCTACTTTTCCCGGAGGGGGAGCTGCGCGACACGCTCGACGGTTTCAC
TGACGCCATCACCAAAAGGCAAAGGAACCCTGGAGGGTTGATGGCCCCAC
CTTCCAGATCGGTCAGAGCCCACAACAGCACGGCGCATCCGATGCTCAAC
AAGCGCTCGGACGTCATCCGTTGACAAAAGAGTCAGATACTCAGCTCTGC
TGGAGCTGTTGAAGAGGGG
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protein sequence of EsuBft811_11a-0001

>EsuBft811_11 ID=EsuBft811_11|Name=EsuBft811_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=487bp
MSGATMARANFKKYTDITNPLAAGQSDTPDGSSSTDAWRDSENLKSGRQK
EEGEEGKEDEEEEEEEDPFGLGSIMSKAEKEEEEDEGQEGEEEDPFGLGA
IMDEPNKGAGTSTSKRSGSGADEPRQKKAHKTTADGTTGGYFKGTTSLTS
AQSSVAEASRQPFRAADSFSGARKGYVFQKGPLGLGYYADKVQIRATAAA
DAVVAVSRAKSRGPEARGSGGRPATEGREKKKQAVDVAASLQKLKVFILK
PKKAAKAASLMADLMEAHMRPDNARMFFRALKPLAEEPAGEAALAAGEGG
ARAFRKLAERASEWVAAPSEGVRAVTWELLFGLRHDTKTDDSFTFARAIK
RLREAIEALGDVTGGGKATNGTAGEGDDGEGTGSARGNGASLSLERKVAL
MLVMKEAFKSYHLAWARSSIEPAFKAAADRRLLFPEGELRDTLDGFTDAI
TKRQRNPGGLMAPPSRSVRAHNSTAHPMLNKRSDVIR
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mRNA from alignment at Scaffold_230:356815..360075-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft811_11a-0001 ID=EsuBft811_11a-0001|Name=EsuBft811_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3261bp|location=Sequence derived from alignment at Scaffold_230:356815..360075- (Ectocarpus subulatus male Bft15b)
TTCTCCTCCGGACAGCAACCATCTCCCCGGGATCAGCGTTTTACATTTTT
TCATTTCTGCATGCGATCAAGGCAAGTATTGCAGCATTGCTCGGGATCGG
GAATCGTCGAATCGACACTACAAGACATGCGGCGTAACTACTGCACCGCT
TGATTCTAGACTGCGGATAGGAGATGGGAAGCACTCTGCATAGCCTGTAC
CTGCTACGGCTGTACAAAACACAGTTGCACCTGCCGTTGCTGTCGACTCA
AGTGCAAAGGTGGTACTCTTTGGCACGTGCTGCCCGCTCGGCCACTGCGT
TTTCTGTCAAAGGTCTAAACCTGCTGTCTGCTACACGGTGCTGTCGGCAG
TGTTCGGTCCGCCGGCATCGATCTATTGAGTCGTGATGTCGGGGGCTACC
ATGGCGAGGGCCAACTTCAAGAAGTACACAGACATCACGAATCCACTGGT
GAGGGAACAATCCGCGTACCCTTGTTCCAGAGGGACAAGATCGAAAGTTT
AAAGTCTCGTTTTGCCGCCTTTTCTTATCCATTTTCATTCATCCACGTGT
TGCTCTCTCTCCAGCATACGAGACTACGGACAATCTTGGGGCGTAGACAG
TCCATCCACATGCACACTGGCTGTATCTGTGCACCAGGCTTTGCTAGCCG
AAGGTTCCCTCCAGCGGACCTGCAGCGGCAGGCGTGCTCCGCTGAGTTGC
CCACTTGCCGCTCAATTTGTTCGTTACACCGGCGGTGTTGACCCGCAGGC
CGCCGGACAGAGCGACACTCCTGATGGGAGCAGCAGCACCGACGCGTGGC
GCGACTCAGAAAACCTGAAATCGGGCCGACAAAAGGAGGAGGGGGAGGAG
GGGAAGGAGGATGAAGAAGAAGAAGAGGAGGAGGATCCGTTTGGTCTGGG
ATCTATCATGTCCAAAGCCGAAAAAGAGGAAGAGGAAGATGAAGGGCAAG
AGGGAGAGGAAGAAGACCCCTTTGGCCTTGGAGCAATCATGGACGAACCA
AACAAGGGCGCTGGCACCTCAACCAGTAAACGCAGCGGCAGTGGCGCTGA
CGAACCCCGACAAAAGAAGGCGCATAAGACGACAGCTGACGGTACAACCG
GCGGATACTTCAAGGGAACGACGTCGTTAACATCCGCCCAATCTTCAGTG
GCGGAGGCATCGCGACAGCCATTTCGGGCCGCGGACTCCTTTAGCGGCGC
GCGGAAGGGCTATGTCTTCCAGAAAGGTCCTCTGGGTCTAGGTTACTACG
CGGACAAGGTTCAAATTCGCGCAACAGCGGCTGCGGATGCAGTGGTGGCA
GTGTCGAGAGCTAAGAGCCGAGGGCCAGAGGCACGAGGTTCTGGAGGAAG
GCCGGCGACGGAGGGCCGTGAGAAAAAAAAGCAGGCGGTGGACGTGGCAG
CCTCGCTGCAGAAACTCAAGGTGTTCATTCTGAAGCCCAAGAAAGCGGCG
AAAGCGGCGTCGCTCATGGCAGACCTGATGGAGGCGCATATGCGTCCGGA
CAACGCCCGGATGTTTTTCAGGTACAGTGGGGGTCCCTGTTTAGTGCCGG
TTGAATAGTGGCGGTGCCCAGTATAGTGCCGGTGTTTTCGGCGGGCACAC
ACTGATTTCATTCTCAGTATGTGAAAAGGTGAGCCACACCGCTGCTTTGT
GCAGCCAAGATGGCTGCGTCATTAGCCCGCACAACACGTCCCGGTGTTTC
ACACAGCAGTATCCGTGTGGTGTATGGAATTCCCACAGAAGTTGCATCGT
GTGCGCCTTGGCGTCGCACCCCGGGGTCGGTTACGACGTACGGCTCCCGG
CTCATCTTCTGTTCATTATTTTTGAGTATTCCCCAACTCCCCTGCAATCT
CACCGCCTTTTACCAAATTCTCGTCGCGTCTTCAAATTCGGGTAGGGCGC
TCAAGCCCCTTGCGGAAGAACCGGCGGGCGAAGCGGCTCTTGCCGCCGGG
GAAGGAGGCGCTAGAGCTTTTCGAAAGCTCGCGGAGAGGGCATCGGAGTG
GGTTGCAGCGCCGTCGGAGGGGGTGCGGGCGGTGACCTGGGAACTCCTCT
TCGGCTTGCGGCATGACGTGAGGTTTTTGCGAACGATGATGGGTGTGCGA
TCGTCCTATTCCTTGTCTATCTATTAACATGTGCTAAGCCGCGAGTATAG
TCAAGGAGAGTCCCGCGAACCCTGCTCACCGAACGATGGCACTCCTTTGA
CTCCATGTGCAAAGCCTGACAGCAGTGAGCACGTACCCCGCCCATCCCAC
AAACACCATCCACCCCCCACCACGCGCCCCGAAACAGACGAAGACGGATG
ACTCGTTTACATTTGCTCGCGCCATCAAGCGCCTCCGTGAAGCCATTGAA
GCCTTAGGCGACGTCACGGGTGGGGGCAAGGCTACCAATGGTACTGCCGG
CGAAGGCGACGATGGTGAGGGAACCGGGTCGGCGAGAGGAAATGGGGCCT
CGCTTTCCTTGGAGCGCAAAGTGGCGCTAATGTTGGTCATGAAAGAGGCG
TTCAAGAGCTACCACCTGGCATGGGCGAGATCGTCGATTGAACCAGCCTT
CAAGGTGAGGATTCGTCATGGCAGGGCTACGTCATGCGTTTTGATGGCAA
ACAGGTTGCCGGTAGTTTGTCCTGTTGAGCTGTGACGCTCCTGTGTTGCG
TGCTGATGTTGCCGATACGACTTTCAGGCATTCTCGACACGTGAACGTTA
GCTTGTTTCATCCCATCGATCACCTTCCTCCCGAAACGCAACCAGTTCAT
TTTTTCTCTTTGATCCTGTGTCGCGGGCTTGCGCGCCGTGTCGCCCGTCG
CCTAGGCGGCGGCAGATCGCAGGCTACTTTTCCCGGAGGGGGAGCTGCGC
GACACGCTCGACGGTTTCACTGACGCCATCACCAAAAGGCAAAGGAACCC
TGGAGGGTTGATGGCCCCACCTTCCAGATCGGTGAGTGTTCGGCGGGAGT
CAAGGCGGGTGGGGGAACTCTACGCTATCCCTTTCCGTATCCTTGGTATG
CGAACGTCGGAATGATGCCGCCAGCCGACTTTTTACTCGTACACATTTCG
TGGAGAGAAGCGGTGCCCTCTCACGGTTCCGGCGAGAGCAGCGTCGTCAA
GGCCAATTCGTGATTTTTAACCTCCCTCTCCCCTCTCGCCGCTGTGTGAA
CAGGTCAGAGCCCACAACAGCACGGCGCATCCGATGCTCAACAAGCGCTC
GGACGTCATCCGTTGACAAAAGAGTCAGATACTCAGCTCTGCTGGAGCTG
TTGAAGAGGGG
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Coding sequence (CDS) from alignment at Scaffold_230:356815..360075-

>EsuBft811_11a-0001 ID=EsuBft811_11a-0001|Name=EsuBft811_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1464bp|location=Sequence derived from alignment at Scaffold_230:356815..360075- (Ectocarpus subulatus male Bft15b)
ATGTCGGGGGCTACCATGGCGAGGGCCAACTTCAAGAAGTACACAGACAT
CACGAATCCACTGGCCGCCGGACAGAGCGACACTCCTGATGGGAGCAGCA
GCACCGACGCGTGGCGCGACTCAGAAAACCTGAAATCGGGCCGACAAAAG
GAGGAGGGGGAGGAGGGGAAGGAGGATGAAGAAGAAGAAGAGGAGGAGGA
TCCGTTTGGTCTGGGATCTATCATGTCCAAAGCCGAAAAAGAGGAAGAGG
AAGATGAAGGGCAAGAGGGAGAGGAAGAAGACCCCTTTGGCCTTGGAGCA
ATCATGGACGAACCAAACAAGGGCGCTGGCACCTCAACCAGTAAACGCAG
CGGCAGTGGCGCTGACGAACCCCGACAAAAGAAGGCGCATAAGACGACAG
CTGACGGTACAACCGGCGGATACTTCAAGGGAACGACGTCGTTAACATCC
GCCCAATCTTCAGTGGCGGAGGCATCGCGACAGCCATTTCGGGCCGCGGA
CTCCTTTAGCGGCGCGCGGAAGGGCTATGTCTTCCAGAAAGGTCCTCTGG
GTCTAGGTTACTACGCGGACAAGGTTCAAATTCGCGCAACAGCGGCTGCG
GATGCAGTGGTGGCAGTGTCGAGAGCTAAGAGCCGAGGGCCAGAGGCACG
AGGTTCTGGAGGAAGGCCGGCGACGGAGGGCCGTGAGAAAAAAAAGCAGG
CGGTGGACGTGGCAGCCTCGCTGCAGAAACTCAAGGTGTTCATTCTGAAG
CCCAAGAAAGCGGCGAAAGCGGCGTCGCTCATGGCAGACCTGATGGAGGC
GCATATGCGTCCGGACAACGCCCGGATGTTTTTCAGGGCGCTCAAGCCCC
TTGCGGAAGAACCGGCGGGCGAAGCGGCTCTTGCCGCCGGGGAAGGAGGC
GCTAGAGCTTTTCGAAAGCTCGCGGAGAGGGCATCGGAGTGGGTTGCAGC
GCCGTCGGAGGGGGTGCGGGCGGTGACCTGGGAACTCCTCTTCGGCTTGC
GGCATGACACGAAGACGGATGACTCGTTTACATTTGCTCGCGCCATCAAG
CGCCTCCGTGAAGCCATTGAAGCCTTAGGCGACGTCACGGGTGGGGGCAA
GGCTACCAATGGTACTGCCGGCGAAGGCGACGATGGTGAGGGAACCGGGT
CGGCGAGAGGAAATGGGGCCTCGCTTTCCTTGGAGCGCAAAGTGGCGCTA
ATGTTGGTCATGAAAGAGGCGTTCAAGAGCTACCACCTGGCATGGGCGAG
ATCGTCGATTGAACCAGCCTTCAAGGCGGCGGCAGATCGCAGGCTACTTT
TCCCGGAGGGGGAGCTGCGCGACACGCTCGACGGTTTCACTGACGCCATC
ACCAAAAGGCAAAGGAACCCTGGAGGGTTGATGGCCCCACCTTCCAGATC
GGTCAGAGCCCACAACAGCACGGCGCATCCGATGCTCAACAAGCGCTCGG
ACGTCATCCGTTGA
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