EsuBft789_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft789_5a-0001
Unique NameEsuBft789_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_176contigScaffold_176:104101..109009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LQY1
ProteomeIdEsuBft789_5
Protein domainsIPR001891
Protein domainsSSF53223
Protein domainsPTHR23406
Protein domainsIPR012301
Ownerapollo_admin@sb-roscoff.fr
Notenad-dependent malic enzyme 59 kda mitochondrial os:solanum tuberosum pe:1 sv:1 [Automatic annotation]
Nb exon7
Max annot lvl2759|Eukaryota
Length945
Hectar predicted targeting categoryother localisation
Evalue3.01e-177
EggNOG OGsCOG0281@1|root,KOG1257@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00105
KEGG koko:K00028,ko:K00029,ko:K13117
KEGG ReactionR00214,R00216
KEGG Pathwayko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200
KEGG ModuleM00169,M00171,M00172,M00355
EC1.1.1.39,1.1.1.40,3.6.4.13
Descriptionmalate dehydrogenase (decarboxylating) (NAD ) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Cross References
External references for this mRNA
DatabaseAccession
GO0050897
EC1.1.1.40
GO0004471
GO0055114
EC4.1.1.3
GO0008948
GO0006108
GO0006833
GO0009507
GO0005524
GO0042803
GO0006972
EC1.1.1.38
EC1.1.1.39
GO0005739
GO0046686
GO0009266
GO0009651
GO0006096
GO0007030
GO0016652
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft789_5aEsuBft789_5aEctocarpus subulatus male Bft15bgeneScaffold_176 104101..109009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_5a-0001EsuBft789_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_176 104101..109009 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_5a-0001-exonagat-exon-9195Ectocarpus subulatus male Bft15bexonScaffold_176 104101..104258 -
EsuBft789_5a-0001-exonagat-exon-9196Ectocarpus subulatus male Bft15bexonScaffold_176 105412..105535 -
EsuBft789_5a-0001-exonagat-exon-9197Ectocarpus subulatus male Bft15bexonScaffold_176 105968..106073 -
EsuBft789_5a-0001-exonagat-exon-9198Ectocarpus subulatus male Bft15bexonScaffold_176 106750..106757 -
EsuBft789_5a-0001-exonagat-exon-9199Ectocarpus subulatus male Bft15bexonScaffold_176 106959..107159 -
EsuBft789_5a-0001-exonagat-exon-9194Ectocarpus subulatus male Bft15bexonScaffold_176 107486..107665 -
EsuBft789_5a-0001-exonEsuBft789_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_176 108842..109009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_5a-0001-cdsEsuBft789_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_176 104101..104258 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft789_5a-0001 ID=EsuBft789_5a-0001|Name=EsuBft789_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=945bp|location=Sequence derived from alignment at Scaffold_176:104101..109009- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATGGTGCCGGACCTGTTCTTCCGAACGCTTACAAAAAACAGGGA
GGGGTCGTGGGACAAGGCGGCGCGGGACCCCAACGACGAGATGGTGCACG
CCGGCCTCACGCCGGACAACATCCGGAAATGGGAGTACCTCAAGGGCATA
CAGGGGCAAAACGAAACGTTGTTCTACCGCGTGCTTTTGGACAACTTCGC
CGAGATGGCCTCCGTGGTGTACACCCCGACGGTAGGGTGGGCCTGCCTGA
ACCTCTCACGCATGTTCCGGATCGCGAGGGGTATGTACTTCTCGGCCAAG
GACCGCGGGCACATGGTCTCCATCGCCTACAACTGGCCCAGCCACGAGGT
GGACGCCATCGTCGTCATGGGCGGTTCTAGGATACTTGGGCTTGGAGACG
TGGGCATGAACGGCATGGGCATCTCGATCGGAAAGCTAGACCTCTACGTG
GCGGCCGCGGGCTTCCACCCGGCCCGAGTGCTCCCCTGCCTCATCGACCT
CGGGACCAACAGCAAGAAGCTTCTGGCGGACGATAGGTTACAACGGAGCG
CGAAAGCCTACCTCGGTCTTAACCAGGAGCGGCCAGATGGAGACGAGTAC
CTCCAGGTGGTGGATGAGTTCGTTGCGGCGGTCAAGGCCAGGTGGCCAAA
GGCCTTGATTCAGGTTGAAGACTTCCGCACGGAGTATGCCAGCAAGCTCC
TAGAGCGCTACCGCTACAAGCACCTCTGCTTCAACGACGATGTACAGTTT
CGGTTCTGTTCCCGTTCTTGCTGTTGGTGGCAGGGCGCGAACTTCTGGGT
CATGAATGCGGACGGTTTGGTCACAGAGGCGAGGTCTTCGACCGTCGAGA
AGGCGACTCGCCGATTCGCTAGGCCAACGGGAGGGAGAGAGCTGAAGGAC
GGCTCAAACGTGGAACAGGCAAGTTCATACGTAGAGATTTCGTAG
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protein sequence of EsuBft789_5a-0001

>EsuBft789_5 ID=EsuBft789_5|Name=EsuBft789_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=314bp
MMMVPDLFFRTLTKNREGSWDKAARDPNDEMVHAGLTPDNIRKWEYLKGI
QGQNETLFYRVLLDNFAEMASVVYTPTVGWACLNLSRMFRIARGMYFSAK
DRGHMVSIAYNWPSHEVDAIVVMGGSRILGLGDVGMNGMGISIGKLDLYV
AAAGFHPARVLPCLIDLGTNSKKLLADDRLQRSAKAYLGLNQERPDGDEY
LQVVDEFVAAVKARWPKALIQVEDFRTEYASKLLERYRYKHLCFNDDVQF
RFCSRSCCWWQGANFWVMNADGLVTEARSSTVEKATRRFARPTGGRELKD
GSNVEQASSYVEIS
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mRNA from alignment at Scaffold_176:104101..109009-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft789_5a-0001 ID=EsuBft789_5a-0001|Name=EsuBft789_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4909bp|location=Sequence derived from alignment at Scaffold_176:104101..109009- (Ectocarpus subulatus male Bft15b)
ATGATGATGGTGCCGGACCTGTTCTTCCGAACGCTTACAAAAAACAGGGA
GGGGTCGTGGGACAAGGCGGCGCGGGACCCCAACGACGAGATGGTGCACG
CCGGCCTCACGCCGGACAACATCCGGAAATGGGAGTACCTCAAGGGCATA
CAGGGGCAAAACGAAACGGTGGGTTTGTTGGGTAGGGGGTGCTTATTATC
GTCAGAGGCTGCGGGTTTATAGGTTGACTCATGACCTTGGTTGTTGACTT
GTGAGCAGGGCGCGCTAGGCAGGAGGGGGATCGCTTTTACAAACACCTTT
CAACGTCATGCACGAAACCCCCTGGATCTCCGTAGATTCGTGTCTAGTGC
TGAGTACACACCTCACAGGGCAGTTCTTTGTCTTGCGTGTGCTCGCGCGA
ACCGGTGCTGGTGACAGGTTTCGTTGTTTGGTTTTATTACGTCACGACTT
TTCTGTTTTCAAAGTGCTAGAATCGGCGTCCATGACATGCAATGCATTCG
TTGTGTCAATGCTAGCCTTTACACTGGTGGTCCCCATGGGATTGTCACTT
CTCGTCGAAGAAGGGTTTACGGTTATTGGTTAGGCATGAATTGGCAATCC
CATGAGGACCAGCGCAAGATGAATCCATAACCTGTCATCGCTGCCGATTC
TACCTCGCTGAAAACATGCGCGTAATCGCTGAAAGACAAACCGTTGAGGT
CATACCACACAGCTAGCAGGGGGTACGTGGCAGTCTTTGCAGCTTTTTTT
TTTGTTGTGGCCCCGTTTAGTCGGTTCAGGGGTGGAAGGCACGCCCACAC
CAAGCTGTAGCAGATGTGTTTCTGTGAGTACGATCACCGCAGCAGCATGC
TGTCGGCCGATGCCTCGCTGTTCTCATGAGCCGCCCCCCCTGTTCTTGTT
GGATGTGTTTGCGTTGGTTGTTGTTGGCCGGTTGGCCTCTTGGAAGTCTG
TTTCGTCTCGCTATTGTTGTGTGGTACGAACGAACGAGTAACCGCGTTTT
GGTTTTCAGTGGCTCCCCCCCTACACGCAAATACAAAAACGACAGAAAAC
AGCACCTTCACCCCCACCCACCCACCCGCAGGTCTTTTTTGTACATGCGC
AGCCGCCGACCCCCCCACCTCTTCAACCCAGCCACCCCCACGCGCCTGTT
AACATGTTGTCGGCTTGTACGTAGTTGTTCTTCAGTGTGCTTATGGACAA
CTTCGCCGAGGTGGCTGCTGAGGAACACGCACCGACAGTCTGCTGGGGCT
GCCTGAAGTTCTCCCGCATGTCCCAGAGCCCCCCCAATCGTTTCAATCCT
GTCACCCCCGCGTGCCTGTTCATGTGTCGTCTGCGTGTACGTAGTTGTTC
TACCGCGTGCTTTTGGACAACTTCGCCGAGATGGCCTCCGTGGTGTACAC
CCCGACGGTAGGGTGGGCCTGCCTGAACCTCTCACGCATGTTCCGGATCG
CGAGGGGTATGTACTTCTCGGCCAAGGACCGCGGGCACATGGTCTCCATC
GCCTACAACTGGCCCAGCCACGAGGTGATGATGGGTTGATGTATTAGGGT
TGCCGTAAGGGTTCTAGTCGTTGGTCGTTGTGGTTGTTCCTGAATGGCGT
TGCTGTTGCAGAAGGGTTGGATTTGTTAGTCGTTGGTTGGGTGTAGTTGT
TGCTAAATGGACGGATTTGCTGCCTTTTTCAGCTTCGGCAGCATCGGTTT
GCCTAATCATCAAGTAGCCGCCATGACAACCACCACCATCAACAACAGCA
ATAACCACACCCATAACAACCGCCTCCATCGGCGACCACAACAAACAATA
ACAAACGATGATCGGACACGGCTGGCCGGCCACCACCTGGTCCCGTTCAG
GTGGACGCCATCGTCGTCATGGGCGGTTCTAGGATACTTGGGCTTGGAGA
CGTGGGCATGAACGGCATGGGCATCTCGATCGGAAAGCTAGACCTCTACG
TGGCGGCCGCGGGCTTCCACCCGGCCCGAGTGCTCCCCTGCCTCATCGAC
CTCGGGACCAACAGCAAGAAGCTTCTGGCGGACGATAGGTTACAACGGAG
CGTAAGCTTATGCCTATGCCGAAGCCTACGCGAAAGCTTCAAGCGTTGAG
CGTTAAGCATAAACGTCGACCGTTAGGCGTAAGCGATAACCTATAAGTGA
TAAGCGTAAGCGGTAAGCGTTAAGCGTAGACGAATGCGCAACCGTAGGCC
TAAACCTGGTGTTGAGCGTTAAGCGTCAGCGAATGCCTAAGAGTAACAGC
AGGCGAAAGCGTAAGCGTAACCGAACCGTAGGTGTGCACTTTCTCTGCTT
TCCGTAGGTGTGTCTGCCACCGTCGCTCTCAGTGTGTCTGATTCTGTCTA
CCATACAGAACGGTCTTGGCTTCTCTCCCGAACAGCCACAACACGGTGCG
GGGTCATGTGGAGGAGAATTTTCATCCCCCCGTGGTGCGGCCGAACTTGG
CGTATCCTACGTTTGGTTTCGACCGTGGTGGCTGGTGGACGAAACCTCGA
CAGTTTGGTGAGCCCGTGCCAACCAGCGCGACCACATGCGCTCGTAGCTG
ATGATGGATAGAATGTGCAATCGCTTCTACTCCACGGGCTTCCCCTGAAG
AGGGGGGGGGGGACCCAACAGAACGTCCGGCCCCCGGTTTCAGAGTAGTA
CCGAAGGTGTACAACGGGGCTAAGCAATGCATTCCGATCTGTGTGTCTCC
TGCCGTTTCACCGCCCCAACGAATCAATATGTTCATCGATACGTAGACTA
GTCATGACGGACTCGGAATCTGTATCAATTTTCATGGCTATTGGTGGTAG
TGGCCGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTA
CACTTGTTGCTGTTGATTTTAGTGCTGTTGCTTCCCTGTGCCGGTCCGTT
TCCGCGTCTCTTTTGTCTTCTTGTTTTTCTGTACAGCTACCTCGGTCTTA
ACCAGGAGCGGCCAGATGGAGACGAGTACCTCCAGGTGGTGGATGAGTTC
GTTGCGGCGGTCAAGGCCAGGTGGCCAAAGGCCTTGATTCAGGTAAAACC
CGCGGGTACTGCTGTTGCTGCTGTTGTTGCTGTCGATGCTTCTATTTCTG
CTGCTGCTGCTGCTGCTACTGCTGCTGTACGTTGTTGCGTCATGTTGTTT
TGTTGCTGTCCTTGTCGTAGAATGTTGCTGTTGTTTTGGTACACTGTACA
CGAGCGTAGCTGTTGTTACTGTTTTCGTCTCTCGCATACCATGTTGCATC
TGGCGGTTGATAGCTGTTGCTGCATGTTGCCGGTGAGGTTGTTGTCCAGT
CAATCGATGACGCACGTTGCCGGTGTCGTTGTTGTCCAGTCCATCCATGA
TATGGTGGTGATAGGTGTGGTTGTGCGAACAAGGTTTGGTCGTTCTCGTT
GACACCTTGGCCTGCCCCGTAAGTGTCTCGCGCCGCGTTTTCGTCTCTTG
GTTGCTGTTTTCTTTTTTTCCTAGGTTGAAGACTTCCGCACGGAGTATGC
CAGCAAGCTCCTAGAGCGCTACCGCTACAAGCACCTCTGCTTCAACGACG
ATGTACAGTTTCGGTTCTGTTCCCGTTCTTGCTGTTGGTGGCAGGGCGGT
TTGATGGTCTGCAGTTACGAATATTGGACGGTGCTACGACAAGACGAAAA
ATACACGAACGCGAAGAGGTAGAGGAGGAATTGAGAGTAACGACGAAACG
AGGTAGGTAACACTACACCCGTACCTCCGACAGGACGCCGACAGCACACA
GCACACAGCCCGCACCAACCAAGACCACACTGCTGCAGACCCCTCCTGGG
CGAGACGCTGCGAACATACTACGCAGAAGAGCTCGAGCAGTCCGAAACCA
TCTCTTTCCCAAATCGAGAGACCGTTTCCCGCGGGACATCTCGCCTTCAT
ACTTTTCGGGGACCCTCCTTGTTGTATGACGAGACCCTTCGTTGTGATCT
TGCGGGACCCCCTCCTTGTGGTTTTGCTGGGCCTCTCTTGGTGATTTTGC
GGGGTCCCTCCTCTTGTGTGTGTGTGTGTTTTTTTTTTTTTCACTTGGTT
GCTCTGTCGGCTGATCGGTTGTCGTCGTCCTCATCGTCTCACCCCGTGAT
TTGGTCTGATCAGGGAACTGCAGCCGCCTCGAAATGAATCTGTTCATGGT
TGTACCGGCGGATGCGTGGCTTGGAGTGCTGGAGATCCTTCTCAGGTTCC
CAAGGAGGGCGAAGAAGACCTTTCCAGTTCGTTTGGTATAAAACACACGG
TATAGGGCCACCACGACCACGAACAGACGGATGGATGTCCACTAATGCGT
ACGCGGTAGTAAGTATTGTCTGGTGCCTCGCACACGCGGCGGCGGTGGCG
TCTTGTGTACCATGTTCAGCGCCGACTTCTTTCTTCTATGTCTCCTTTTT
CAGGGTAACAGGCAGTGCCTACTTATTTCCTCTAGTTCTTCATTTTCAGC
GCAAGACTCTGGCAACTTTCGTACCATTTTTTTTTTTTAAGTATCTCTCG
TTCGTGATCTGTACTTTCCTCTGCTGGAATTTCATTCTCAGCTCCGGACG
CAGGATATGTCTCTGATCTCGCGCTTGTCCTGTACAGTAAAGAAGACCAC
TACCCACTCTTTCCTCTCACCGGTGTGTTTTTTCTTTTTTTACACCTTTT
TTCTTCCTTGCGTCTCAGGGAACTTTTTCTTCGCGTTTGGCCTTTTTTAT
TGTTGTTGCTCTATTTTTTTGCTCCATTTTTTTCCTTGCGTCGCGTTGTA
GCGAACTTCTGGGTCATGAATGCGGACGGTTTGGTCACAGAGGCGAGGTC
TTCGACCGTCGAGAAGGCGACTCGCCGATTCGCTAGGCCAACGGGAGGGA
GAGAGCTGAAGGACGGCTCAAACGTGGAACAGGCAAGTTCATACGTAGAG
ATTTCGTAG
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Coding sequence (CDS) from alignment at Scaffold_176:104101..109009-

>EsuBft789_5a-0001 ID=EsuBft789_5a-0001|Name=EsuBft789_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=945bp|location=Sequence derived from alignment at Scaffold_176:104101..109009- (Ectocarpus subulatus male Bft15b)
ATGATGATGGTGCCGGACCTGTTCTTCCGAACGCTTACAAAAAACAGGGA
GGGGTCGTGGGACAAGGCGGCGCGGGACCCCAACGACGAGATGGTGCACG
CCGGCCTCACGCCGGACAACATCCGGAAATGGGAGTACCTCAAGGGCATA
CAGGGGCAAAACGAAACGTTGTTCTACCGCGTGCTTTTGGACAACTTCGC
CGAGATGGCCTCCGTGGTGTACACCCCGACGGTAGGGTGGGCCTGCCTGA
ACCTCTCACGCATGTTCCGGATCGCGAGGGGTATGTACTTCTCGGCCAAG
GACCGCGGGCACATGGTCTCCATCGCCTACAACTGGCCCAGCCACGAGGT
GGACGCCATCGTCGTCATGGGCGGTTCTAGGATACTTGGGCTTGGAGACG
TGGGCATGAACGGCATGGGCATCTCGATCGGAAAGCTAGACCTCTACGTG
GCGGCCGCGGGCTTCCACCCGGCCCGAGTGCTCCCCTGCCTCATCGACCT
CGGGACCAACAGCAAGAAGCTTCTGGCGGACGATAGGTTACAACGGAGCG
CGAAAGCCTACCTCGGTCTTAACCAGGAGCGGCCAGATGGAGACGAGTAC
CTCCAGGTGGTGGATGAGTTCGTTGCGGCGGTCAAGGCCAGGTGGCCAAA
GGCCTTGATTCAGGTTGAAGACTTCCGCACGGAGTATGCCAGCAAGCTCC
TAGAGCGCTACCGCTACAAGCACCTCTGCTTCAACGACGATGTACAGTTT
CGGTTCTGTTCCCGTTCTTGCTGTTGGTGGCAGGGCGCGAACTTCTGGGT
CATGAATGCGGACGGTTTGGTCACAGAGGCGAGGTCTTCGACCGTCGAGA
AGGCGACTCGCCGATTCGCTAGGCCAACGGGAGGGAGAGAGCTGAAGGAC
GGCTCAAACGTGGAACAGGCAAGTTCATACGTAGAGATTTCGTAG
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