Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft789_3 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 241 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft789_3a-0001 ID=EsuBft789_3a-0001|Name=EsuBft789_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2417bp|location=Sequence derived from alignment at Scaffold_176:98339..100755- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGGCAGCAGTATTCTCCCAGCGGTGGTGGTTTCCCCGCTGCTGTAGCGGG
GAGAACTGGCCGTAAGGCCCGCGATGCCGGCAGGAGCGGCGGTATCGGCG
GCAACTCCAGCAGCAACGGCGGTGGCCTCCGGCGGCAGTGTTCTATCCGC
GGCGGTGGCGGCGACCACGACCGGAGCACCGGCGTTGGCACTTGGAGCGG
CAGCATCGGCGACGGCACCAGCAGTGACGGCGGTGACCCGCGATGGCGTC
GATCACACAATATCGGTTGGGGGGGCAGCCAGTGCACCCACTGAAGCCAT
GGGAGCACCAAGAGCGACAGCGGCGAAAGAGGCCGTCGTCGCTGATGTGA
ATGAGCATTTGCCCAACGTTGTAACGATGACGGGAGGAGGTAGTCAAAGA
CGGCGGCAACGACAGCCAGAGGATAGCTGCAACGACGCAACAGTGGTCGA
CATCGACAACGGCAGCGATTATGGTGGTTGGCATGCCGGCGAGGTTTGTG
ACGGCTGGGATGACAGCGGCTGTGGCGAGAGGGGGGCGTCCACGCACCCT
TTCGATCCCGAACCGTGCTTGCGAGGGTGCGCGGCGCCAGCGATTGCGGG
GAGGACGACCTGGTGGATGGATCCAGCAGCAGCATCGGCAACGACGGAGA
GGGAATGGATGTGGTCTGGTTTCGGGCACTGCTGCGCCCTTCCGGCCGGG
GGAAACGGTGGCTTATGAGGGCTGGGGTACGGGGGTCGGTGCTGGGGGTC
GACACCCCTTTCGACCGTGGAAAGATGTCGCGGGAGCAACGGTCGGGGCG
CTCGTGTTCGCGGCCGAGGCAGTGGCAGGAGGACCATGAGGCGGAGGAGG
GACTATGGAGGATCGGGAGAATTCAACAATGACAACAAGCAGCGCAACTT
CTGCTGGGGTCGTAAACTCGCCCAAGGCACGTGATGTTATCGCGTCCGTG
TTCTTTTCGTTTTGCTTTGATTTGGGGTTGTGCAGTCTGTTGTAATTTGT
GTTGGTCTTCAGATCCCATATAACTGTTGCACTCTTCGCCGTTGTTCGAA
TGGTTGCAAATCAGTTTTCCTATCGTTGCCACTCTTGCAGGTTTGGATTT
GCTTTGGTTTTGTTCTGCGGAGTGTCTACTCGCGTTTTACCTTGCAGTGA
CATTGATTTCCTTGGCCAAATGACGGGAAATTCCATGATAGGTTTTGGAT
AATTTTCTGGGATAGAAATGGAACATTGTGGCGGGGGGGGAGTTGCCAGC
AAACATTTCTCAGACGGCGATGGTAAAACATTTATATCTGGGAAAGGTTT
ATTCCACGCTCAGCTTACCTTCTTTGTTGGGACAGTATTCTCTATGGAAG
CTACCGCTATGCTTTTCTGGTGACACTGGATATGTGTAGGCGTTGTTTTG
CGGGCGACGTGCTACTGTTTTTTAGTCCCTCCGATGTACCGATAACCTTG
CAGTCAATCCTTGCGGACTACCAATATCCTTCCCATCTAGGACAAGTTGT
GCGCTGGCACGAGTTTATTTGTGACTGATGTGCTGGACGTGTGAAATATT
TTCTTTGAAATATGCATATTTTGGTTCCTTGTTTCGGTTGGAAGTTTTAT
CTGATGGATTTGGAATGCAGAGTTGGCATGCTGGACGTCGCGGTGTTCCG
TCGGTTATCATGGGGAGGGGGTGATGTGATAACATGATGCCCGCCGCAGT
ACCACAAGCAATGGTGCGTTGTGTGTCAGTTGAAGTTTTGGATTAATTCC
CGCGTTCACGGGCGAAGTTGATACGGAATCGAATGTTTTTTGGGACTTTC
TTATCGGGTTTTGGTAGTTGACGTTTCGATGATTTTCCGCGTTTTACAAG
GAGGGGTTATTGTTTGTGTTTGACTGCTTGAGAGTCGAGGAGGAGGCGTT
ATATGTTTCGAACCAGGTTTTTGCCTGCCGCTGCTGGTAACCGGCTGGTA
ATTTTGTTATCGGAGATGGGGCAAGGGTGGAGGGAGATACACGCCAGCAG
GGAGGGAGACGGGAGGAGGGTGTGACCAATAGTCTATAGTATTATACTGC
TGCTGCTGCTGCTTAGCTAGCGGCGGAAGCGAGAGGAGGGGAGGAATTCT
TGCCATTGTTTAGTTGGTTGTTTCACGATCTCGAGAAAAGAGATATACGC
ACACACACGAGCTTTTCACACCGTATATGGTAGAGCTTTCACGGCGTGTA
ATAGTTATTTTTTTATTTTTTTGTACGAAAGTACACCAATCAATCTATCT
CTTCCACGCATGAAGAAGAGTCAGGGATAGAATAGCCATGAATTCATAGA
GCTGTTGCGTCTCGTTAGTTTTGGCTGTCGTACTACAGCATTGCCCGCAT
GTATATGCTTATGTTCAGTTCTCGTCATCATCCCCGCGTGATTTCTACCG
GAGGGAAGGATTGTCTG back to topprotein sequence of EsuBft789_3a-0001 >EsuBft789_3 ID=EsuBft789_3|Name=EsuBft789_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=214bp
MPAGAAVSAATPAATAVASGGSVLSAAVAATTTGAPALALGAAASATAPA
VTAVTRDGVDHTISVGGAASAPTEAMGAPRATAAKEAVVADVNEHLPNVV
TMTGGGSQRRRQRQPEDSCNDATVVDIDNGSDYGGWHAGEVCDGWDDSGC
GERGASTHPFDPEPCLRGCAAPAIAGRTTWWMDPAAASATTEREWMWSGF
GHCCALPAGGNGGL back to topmRNA from alignment at Scaffold_176:98339..100755- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft789_3a-0001 ID=EsuBft789_3a-0001|Name=EsuBft789_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2417bp|location=Sequence derived from alignment at Scaffold_176:98339..100755- (Ectocarpus subulatus male Bft15b)
TGGCAGCAGTATTCTCCCAGCGGTGGTGGTTTCCCCGCTGCTGTAGCGGG
GAGAACTGGCCGTAAGGCCCGCGATGCCGGCAGGAGCGGCGGTATCGGCG
GCAACTCCAGCAGCAACGGCGGTGGCCTCCGGCGGCAGTGTTCTATCCGC
GGCGGTGGCGGCGACCACGACCGGAGCACCGGCGTTGGCACTTGGAGCGG
CAGCATCGGCGACGGCACCAGCAGTGACGGCGGTGACCCGCGATGGCGTC
GATCACACAATATCGGTTGGGGGGGCAGCCAGTGCACCCACTGAAGCCAT
GGGAGCACCAAGAGCGACAGCGGCGAAAGAGGCCGTCGTCGCTGATGTGA
ATGAGCATTTGCCCAACGTTGTAACGATGACGGGAGGAGGTAGTCAAAGA
CGGCGGCAACGACAGCCAGAGGATAGCTGCAACGACGCAACAGTGGTCGA
CATCGACAACGGCAGCGATTATGGTGGTTGGCATGCCGGCGAGGTTTGTG
ACGGCTGGGATGACAGCGGCTGTGGCGAGAGGGGGGCGTCCACGCACCCT
TTCGATCCCGAACCGTGCTTGCGAGGGTGCGCGGCGCCAGCGATTGCGGG
GAGGACGACCTGGTGGATGGATCCAGCAGCAGCATCGGCAACGACGGAGA
GGGAATGGATGTGGTCTGGTTTCGGGCACTGCTGCGCCCTTCCGGCCGGG
GGAAACGGTGGCTTATGAGGGCTGGGGTACGGGGGTCGGTGCTGGGGGTC
GACACCCCTTTCGACCGTGGAAAGATGTCGCGGGAGCAACGGTCGGGGCG
CTCGTGTTCGCGGCCGAGGCAGTGGCAGGAGGACCATGAGGCGGAGGAGG
GACTATGGAGGATCGGGAGAATTCAACAATGACAACAAGCAGCGCAACTT
CTGCTGGGGTCGTAAACTCGCCCAAGGCACGTGATGTTATCGCGTCCGTG
TTCTTTTCGTTTTGCTTTGATTTGGGGTTGTGCAGTCTGTTGTAATTTGT
GTTGGTCTTCAGATCCCATATAACTGTTGCACTCTTCGCCGTTGTTCGAA
TGGTTGCAAATCAGTTTTCCTATCGTTGCCACTCTTGCAGGTTTGGATTT
GCTTTGGTTTTGTTCTGCGGAGTGTCTACTCGCGTTTTACCTTGCAGTGA
CATTGATTTCCTTGGCCAAATGACGGGAAATTCCATGATAGGTTTTGGAT
AATTTTCTGGGATAGAAATGGAACATTGTGGCGGGGGGGGAGTTGCCAGC
AAACATTTCTCAGACGGCGATGGTAAAACATTTATATCTGGGAAAGGTTT
ATTCCACGCTCAGCTTACCTTCTTTGTTGGGACAGTATTCTCTATGGAAG
CTACCGCTATGCTTTTCTGGTGACACTGGATATGTGTAGGCGTTGTTTTG
CGGGCGACGTGCTACTGTTTTTTAGTCCCTCCGATGTACCGATAACCTTG
CAGTCAATCCTTGCGGACTACCAATATCCTTCCCATCTAGGACAAGTTGT
GCGCTGGCACGAGTTTATTTGTGACTGATGTGCTGGACGTGTGAAATATT
TTCTTTGAAATATGCATATTTTGGTTCCTTGTTTCGGTTGGAAGTTTTAT
CTGATGGATTTGGAATGCAGAGTTGGCATGCTGGACGTCGCGGTGTTCCG
TCGGTTATCATGGGGAGGGGGTGATGTGATAACATGATGCCCGCCGCAGT
ACCACAAGCAATGGTGCGTTGTGTGTCAGTTGAAGTTTTGGATTAATTCC
CGCGTTCACGGGCGAAGTTGATACGGAATCGAATGTTTTTTGGGACTTTC
TTATCGGGTTTTGGTAGTTGACGTTTCGATGATTTTCCGCGTTTTACAAG
GAGGGGTTATTGTTTGTGTTTGACTGCTTGAGAGTCGAGGAGGAGGCGTT
ATATGTTTCGAACCAGGTTTTTGCCTGCCGCTGCTGGTAACCGGCTGGTA
ATTTTGTTATCGGAGATGGGGCAAGGGTGGAGGGAGATACACGCCAGCAG
GGAGGGAGACGGGAGGAGGGTGTGACCAATAGTCTATAGTATTATACTGC
TGCTGCTGCTGCTTAGCTAGCGGCGGAAGCGAGAGGAGGGGAGGAATTCT
TGCCATTGTTTAGTTGGTTGTTTCACGATCTCGAGAAAAGAGATATACGC
ACACACACGAGCTTTTCACACCGTATATGGTAGAGCTTTCACGGCGTGTA
ATAGTTATTTTTTTATTTTTTTGTACGAAAGTACACCAATCAATCTATCT
CTTCCACGCATGAAGAAGAGTCAGGGATAGAATAGCCATGAATTCATAGA
GCTGTTGCGTCTCGTTAGTTTTGGCTGTCGTACTACAGCATTGCCCGCAT
GTATATGCTTATGTTCAGTTCTCGTCATCATCCCCGCGTGATTTCTACCG
GAGGGAAGGATTGTCTG back to topCoding sequence (CDS) from alignment at Scaffold_176:98339..100755- >EsuBft789_3a-0001 ID=EsuBft789_3a-0001|Name=EsuBft789_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=645bp|location=Sequence derived from alignment at Scaffold_176:98339..100755- (Ectocarpus subulatus male Bft15b)
ATGCCGGCAGGAGCGGCGGTATCGGCGGCAACTCCAGCAGCAACGGCGGT
GGCCTCCGGCGGCAGTGTTCTATCCGCGGCGGTGGCGGCGACCACGACCG
GAGCACCGGCGTTGGCACTTGGAGCGGCAGCATCGGCGACGGCACCAGCA
GTGACGGCGGTGACCCGCGATGGCGTCGATCACACAATATCGGTTGGGGG
GGCAGCCAGTGCACCCACTGAAGCCATGGGAGCACCAAGAGCGACAGCGG
CGAAAGAGGCCGTCGTCGCTGATGTGAATGAGCATTTGCCCAACGTTGTA
ACGATGACGGGAGGAGGTAGTCAAAGACGGCGGCAACGACAGCCAGAGGA
TAGCTGCAACGACGCAACAGTGGTCGACATCGACAACGGCAGCGATTATG
GTGGTTGGCATGCCGGCGAGGTTTGTGACGGCTGGGATGACAGCGGCTGT
GGCGAGAGGGGGGCGTCCACGCACCCTTTCGATCCCGAACCGTGCTTGCG
AGGGTGCGCGGCGCCAGCGATTGCGGGGAGGACGACCTGGTGGATGGATC
CAGCAGCAGCATCGGCAACGACGGAGAGGGAATGGATGTGGTCTGGTTTC
GGGCACTGCTGCGCCCTTCCGGCCGGGGGAAACGGTGGCTTATGA back to top
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