EsuBft789_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft789_11a-0001
Unique NameEsuBft789_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_176contigScaffold_176:166648..168000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog67593.Physo109618
ProteomeIdEsuBft789_11
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl67593.Physo109618|-
Length798
Evalue3.45e-18
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHRW@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransposition, RNA-mediated
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft789_11aEsuBft789_11aEctocarpus subulatus male Bft15bgeneScaffold_176 166648..168000 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_11a-0001-exonagat-exon-9223Ectocarpus subulatus male Bft15bexonScaffold_176 166648..166828 -
EsuBft789_11a-0001-exonagat-exon-9222Ectocarpus subulatus male Bft15bexonScaffold_176 167326..167490 -
EsuBft789_11a-0001-exonEsuBft789_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_176 167549..168000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_11a-0001-cdsEsuBft789_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_176 166648..166828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_11a-0001EsuBft789_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_176 166648..168000 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft789_11a-0001 ID=EsuBft789_11a-0001|Name=EsuBft789_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=798bp|location=Sequence derived from alignment at Scaffold_176:166648..168000- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAACGCA
GAGTGGCCGTGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATG
GATTCGAACAGTGCAGGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGAT
GGAGAGGTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGC
GGCAGACGAGGGAGACCGAGAGGAGTTGTTCGCTTCCCTCAACAAGAAGT
TTCCGGTGAAAGATCTGGGGGAGTGTACCTGGTACGACGGGTGTGCTATC
GCCATGGATGTAGAAAATTGCATCACCAAGCTGTCCCAGACAGCATACAT
TGAGAGTATGCTGACGCGGTTTGATGTGACCACGACCGCTTTCACCCCTG
CTGCCACCGATGCCGACCTAGAGCCGAAAGGAGATGACGAGCCCGANTGG
CCGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGATGGAGAGGTCGTAGG
TCTCATCGTGATCTACGTTGATTACATCTTAGTGGCGGCAGACGAGGGAG
AGCGAGAGGAGTTGTTTGCTTCCCTCAACAAGGAGTTTCCGGTGAAAGAT
CTGGGGGAGTGTACCTGCTTAGCGAGGAGCAAGCACGTCGACGTGCGGTT
TCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAGAGTATG
TTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGCAGA
GAGAAGTTAGAGTACCACCGGAAGCCTCTGATGAACCTACCGATGTAG
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protein sequence of EsuBft789_11a-0001

>EsuBft789_11 ID=EsuBft789_11|Name=EsuBft789_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=265bp
MSGKVVKVERALYGLTQSGREWGFEAADALIENGFEQCRVDPCVFRKVVD
GEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAI
AMDVENCITKLSQTAYIESMLTRFDVTTTAFTPAATDADLEPKGDDEPXW
PVDPCVFRKVVDGEVVGLIVIYVDYILVAADEGEREELFASLNKEFPVKD
LGECTCLARSKHVDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGR
EKLEYHRKPLMNLPM
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mRNA from alignment at Scaffold_176:166648..168000-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft789_11a-0001 ID=EsuBft789_11a-0001|Name=EsuBft789_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1353bp|location=Sequence derived from alignment at Scaffold_176:166648..168000- (Ectocarpus subulatus male Bft15b)
ATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAACGCA
GAGTGGCCGTGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATG
GATTCGAACAGTGCAGGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGAT
GGAGAGGTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGC
GGCAGACGAGGGAGACCGAGAGGAGTTGTTCGCTTCCCTCAACAAGAAGT
TTCCGGTGAAAGATCTGGGGGAGTGTACCTGGTACGACGGGTGTGCTATC
GCCATGGATGTAGAAAATTGCATCACCAAGCTGTCCCAGACAGCATACAT
TGAGAGTATGCTGACGCGGTTTGATGTGACCACGACCGCTTTCACCCCTG
CTGCCACCGATGCCGACCTAGAGCCGAAAGGAGATGACGAGCCCGANTGG
CCGTGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATGGATTCG
AACAGTGCAGGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGATGGAGAG
GTCGTAGGTCTCATCGTGATCTACGTTGATTACATCTTAGTGGCGGCAGA
CGAGGGAGAGCGAGAGGAGTTGTTTGCTTCCCTCAACAAGGAGTTTCCGG
TGAAAGATCTGGGGGAGTGTACCTGGTACGACGGGTGTGCTATCGCCATG
GATGTAGAAAATTGCATCACCAAGCTGTCCCAGACAGCATACATTGAGAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTACCTGAA
CTTCACGAATAACTTCGGCATCACCTACGTACGGGGGTCAGGACTAGAAC
TAAGTGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGT
TCTACTACCGGGCTAGCTATGATNCCTTGAGGACAACAAGGGGACTCTCG
CCTTAATCGAGAACCCGTTCAGCTTAGCGAGGAGCAAGCACGTCGACGTG
CGGTTTCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAGA
GTATGTTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTG
GCAGAGAGAAGTTAGAGTACCACCGGAAGCCTCTGATGAACCTACCGATG
TAG
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Coding sequence (CDS) from alignment at Scaffold_176:166648..168000-

>EsuBft789_11a-0001 ID=EsuBft789_11a-0001|Name=EsuBft789_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=798bp|location=Sequence derived from alignment at Scaffold_176:166648..168000- (Ectocarpus subulatus male Bft15b)
ATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAACGCA
GAGTGGCCGTGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATG
GATTCGAACAGTGCAGGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGAT
GGAGAGGTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGC
GGCAGACGAGGGAGACCGAGAGGAGTTGTTCGCTTCCCTCAACAAGAAGT
TTCCGGTGAAAGATCTGGGGGAGTGTACCTGGTACGACGGGTGTGCTATC
GCCATGGATGTAGAAAATTGCATCACCAAGCTGTCCCAGACAGCATACAT
TGAGAGTATGCTGACGCGGTTTGATGTGACCACGACCGCTTTCACCCCTG
CTGCCACCGATGCCGACCTAGAGCCGAAAGGAGATGACGAGCCCGANTGG
CCGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGATGGAGAGGTCGTAGG
TCTCATCGTGATCTACGTTGATTACATCTTAGTGGCGGCAGACGAGGGAG
AGCGAGAGGAGTTGTTTGCTTCCCTCAACAAGGAGTTTCCGGTGAAAGAT
CTGGGGGAGTGTACCTGCTTAGCGAGGAGCAAGCACGTCGACGTGCGGTT
TCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAGAGTATG
TTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGCAGA
GAGAAGTTAGAGTACCACCGGAAGCCTCTGATGAACCTACCGATGTAG
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