Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 67593.Physo109618 |
| ProteomeId | EsuBft789_11 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 67593.Physo109618|- |
| Length | 798 |
| Evalue | 3.45e-18 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QHRW@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | transposition, RNA-mediated |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft789_11a-0001 ID=EsuBft789_11a-0001|Name=EsuBft789_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=798bp|location=Sequence derived from alignment at Scaffold_176:166648..168000- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAACGCA
GAGTGGCCGTGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATG
GATTCGAACAGTGCAGGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGAT
GGAGAGGTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGC
GGCAGACGAGGGAGACCGAGAGGAGTTGTTCGCTTCCCTCAACAAGAAGT
TTCCGGTGAAAGATCTGGGGGAGTGTACCTGGTACGACGGGTGTGCTATC
GCCATGGATGTAGAAAATTGCATCACCAAGCTGTCCCAGACAGCATACAT
TGAGAGTATGCTGACGCGGTTTGATGTGACCACGACCGCTTTCACCCCTG
CTGCCACCGATGCCGACCTAGAGCCGAAAGGAGATGACGAGCCCGANTGG
CCGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGATGGAGAGGTCGTAGG
TCTCATCGTGATCTACGTTGATTACATCTTAGTGGCGGCAGACGAGGGAG
AGCGAGAGGAGTTGTTTGCTTCCCTCAACAAGGAGTTTCCGGTGAAAGAT
CTGGGGGAGTGTACCTGCTTAGCGAGGAGCAAGCACGTCGACGTGCGGTT
TCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAGAGTATG
TTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGCAGA
GAGAAGTTAGAGTACCACCGGAAGCCTCTGATGAACCTACCGATGTAG back to topprotein sequence of EsuBft789_11a-0001 >EsuBft789_11 ID=EsuBft789_11|Name=EsuBft789_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=265bp
MSGKVVKVERALYGLTQSGREWGFEAADALIENGFEQCRVDPCVFRKVVD
GEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAI
AMDVENCITKLSQTAYIESMLTRFDVTTTAFTPAATDADLEPKGDDEPXW
PVDPCVFRKVVDGEVVGLIVIYVDYILVAADEGEREELFASLNKEFPVKD
LGECTCLARSKHVDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGR
EKLEYHRKPLMNLPM back to topmRNA from alignment at Scaffold_176:166648..168000- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft789_11a-0001 ID=EsuBft789_11a-0001|Name=EsuBft789_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1353bp|location=Sequence derived from alignment at Scaffold_176:166648..168000- (Ectocarpus subulatus male Bft15b)
ATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAACGCA
GAGTGGCCGTGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATG
GATTCGAACAGTGCAGGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGAT
GGAGAGGTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGC
GGCAGACGAGGGAGACCGAGAGGAGTTGTTCGCTTCCCTCAACAAGAAGT
TTCCGGTGAAAGATCTGGGGGAGTGTACCTGGTACGACGGGTGTGCTATC
GCCATGGATGTAGAAAATTGCATCACCAAGCTGTCCCAGACAGCATACAT
TGAGAGTATGCTGACGCGGTTTGATGTGACCACGACCGCTTTCACCCCTG
CTGCCACCGATGCCGACCTAGAGCCGAAAGGAGATGACGAGCCCGANTGG
CCGTGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATGGATTCG
AACAGTGCAGGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGATGGAGAG
GTCGTAGGTCTCATCGTGATCTACGTTGATTACATCTTAGTGGCGGCAGA
CGAGGGAGAGCGAGAGGAGTTGTTTGCTTCCCTCAACAAGGAGTTTCCGG
TGAAAGATCTGGGGGAGTGTACCTGGTACGACGGGTGTGCTATCGCCATG
GATGTAGAAAATTGCATCACCAAGCTGTCCCAGACAGCATACATTGAGAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTACCTGAA
CTTCACGAATAACTTCGGCATCACCTACGTACGGGGGTCAGGACTAGAAC
TAAGTGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGT
TCTACTACCGGGCTAGCTATGATNCCTTGAGGACAACAAGGGGACTCTCG
CCTTAATCGAGAACCCGTTCAGCTTAGCGAGGAGCAAGCACGTCGACGTG
CGGTTTCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAGA
GTATGTTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTG
GCAGAGAGAAGTTAGAGTACCACCGGAAGCCTCTGATGAACCTACCGATG
TAG back to topCoding sequence (CDS) from alignment at Scaffold_176:166648..168000- >EsuBft789_11a-0001 ID=EsuBft789_11a-0001|Name=EsuBft789_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=798bp|location=Sequence derived from alignment at Scaffold_176:166648..168000- (Ectocarpus subulatus male Bft15b)
ATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAACGCA
GAGTGGCCGTGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATG
GATTCGAACAGTGCAGGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGAT
GGAGAGGTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGC
GGCAGACGAGGGAGACCGAGAGGAGTTGTTCGCTTCCCTCAACAAGAAGT
TTCCGGTGAAAGATCTGGGGGAGTGTACCTGGTACGACGGGTGTGCTATC
GCCATGGATGTAGAAAATTGCATCACCAAGCTGTCCCAGACAGCATACAT
TGAGAGTATGCTGACGCGGTTTGATGTGACCACGACCGCTTTCACCCCTG
CTGCCACCGATGCCGACCTAGAGCCGAAAGGAGATGACGAGCCCGANTGG
CCGGTTGACCCGTGTGTCTTCCGGAAGGTGGTGGATGGAGAGGTCGTAGG
TCTCATCGTGATCTACGTTGATTACATCTTAGTGGCGGCAGACGAGGGAG
AGCGAGAGGAGTTGTTTGCTTCCCTCAACAAGGAGTTTCCGGTGAAAGAT
CTGGGGGAGTGTACCTGCTTAGCGAGGAGCAAGCACGTCGACGTGCGGTT
TCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAGAGTATG
TTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGCAGA
GAGAAGTTAGAGTACCACCGGAAGCCTCTGATGAACCTACCGATGTAG back to top
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