EsuBft789_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft789_10a-0001
Unique NameEsuBft789_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_176contigScaffold_176:162127..165000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6334.EFV48939
ProteomeIdEsuBft789_10
Protein domainsSSF56672
Protein domainsCoil
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon5
Max annot lvl33208|Metazoa
Length2247
Hectar predicted targeting categoryother localisation
Evalue4.51e-47
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,40FC4@6231|Nematoda
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
EC3.1
GO0003824
GO0097159
GO1901363
GO0004518
GO0090304
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft789_10aEsuBft789_10aEctocarpus subulatus male Bft15bgeneScaffold_176 162127..165000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_10a-0001EsuBft789_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_176 162127..165000 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_10a-0001-exonEsuBft789_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_176 162127..163060 +
EsuBft789_10a-0001-exonagat-exon-9221Ectocarpus subulatus male Bft15bexonScaffold_176 163448..164302 +
EsuBft789_10a-0001-exonagat-exon-9219Ectocarpus subulatus male Bft15bexonScaffold_176 164383..164589 +
EsuBft789_10a-0001-exonagat-exon-9220Ectocarpus subulatus male Bft15bexonScaffold_176 164686..164908 +
EsuBft789_10a-0001-exonagat-exon-9218Ectocarpus subulatus male Bft15bexonScaffold_176 164973..165000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_10a-0001-cdsEsuBft789_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_176 162127..163060 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft789_10a-0001 ID=EsuBft789_10a-0001|Name=EsuBft789_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2247bp|location=Sequence derived from alignment at Scaffold_176:162127..165000+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGCGCCTGCGGCACCCGGAAATGGGATGCAGGGGGACGAAGGCGG
AGGTTCCCCGTCGCCCTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACAACAGTAGTGGCCCCAGCTAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCTTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCCGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACCCCGGTGAGAACGATGA
TGACGGCAATAAAGGCGGTGAGCCTGCGACGCTCGAGGAGTTGAAGTACG
ACCCCGCCGACAGCCGCTACCCGTCAGGAACGGGAGGGAAGAAACTTCTT
TGGGGAGAGTCGAGCGCCGGCCAGCTGCGCCATGTGCTCCAGCCCGGCCG
CACCCGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGAGCCGAGCG
AGGGGCCAGCCCCCGAGGAGGCGCCGTTATCAACTGTCCTGGAGACCGAG
AACGGTCCGGAGATCGTTGCGGAATATATCCGCGAATCGCTGTTGGAGGA
GCGCATGCAAGACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCAGTTAC
AGTACGATCTAGTGAAGGCGCTCCATCCTGATGCAGGGGAGCTGGAGCTG
GCATTCAGTGCAAACGAAAAGGACAACGGGTCTCCGCAACCACTCCTTGA
CCCAGAGCTAAGTGTTCCCTCGCCGATCGGGCAGAAGCCTAACGATGTAG
AGGCTGTCCCGCTCATATACAGAGATGCGATGGATTCCAAGTACAAGGTG
TTTTGGGAAGCGGCGACAGTGAAAGAGAACGGTGCTTCTGCATGCCCGTC
TACGACGTCCATCAAAACCGTGGTTGTCGTAGCCAACGAGAAGAAAACTA
AGATGTTCCACTGGGACATTAAACAAGCGTACATTCACGCCAAGCTCAAA
GAAGAGCTTTTTCTCAGGGTTCCCCAGGGTTGTGGTGACATGTCTGGCAA
GGTGTGTAAGGTTGAGCGTGCACTGCATGGCCTGAAACAAAGCGTTCGCG
AATGGGGGTTTGAAGCTGCTGATTCCCTCGTCGCGAATGGGTCCGAGCAG
TGCAGGGCTGACCCGTGTGTTTTCCGTAGGATGGTTGACGGAGCGGTCGT
AGGTCTGATCATGACCTACGTAGACGACATTTTGTTGGTGGCGTCCGAGC
AAGAGCGTCAAGAGTTGCTTGCTTCCCTCCAGAAGATTTTTCCGGTGAAG
GACTTGGGAGAATGCACGTGGTATGATGGGATTGGCATTGAGTTGGACCT
AGAGAACGGCATCACCAAATTGTCCCAGACGGCATACATCGAGAGCATCA
TCAAGCGGTTTAACGTGACTTCTACCGCCCCCACGCCTGCTGTCCCCGGC
GCTGACCTAGGGCCGAAACGAGATGACGAGCCCACGGTGGACAAGCCAGT
GAGGGAGGCACTCGGGTGCCTGATGTGGGTGGTGCATACGAGGCCGGACA
TCGCTCTGCCGTTGAACAAGGTCCAGAAGGTGGCTCACTCTCCCACCGAC
AGGATATGGCAGGCGCTTCTGAGGGTCATGTCTCACCTCAACGCCACGAA
GGACCTGAGCCTCACCTACGTGCGGGGGTCAGGGCTAGATCTGGGAGTGT
GGGTCGATGCCAGCTACGCCGACGACGTTGTTGACAGGCTCATCCTCNAG
CCGGACATCGCTCTGCCGTTGAACAAGGTCCAGAAGGTGGCTCACTCTCC
CACCGACAGGATATGGCAGGCGCTTCTGAGGGTCATGTCTCACCTCAACG
CCACGAAGGACCTGAGCCTCACCTACGTGCGGGGGTCAGGGCTAGATCTG
GGAGTGTGGGTCGATGCCAGCTACGCCGACGACGTTGTTGACAGGCAGTA
TCTAGCAGCCGGGGAGAGAGTGAAGGAGGCGTTGCATGTGCGTGCGGTTC
TATCTTTCGTAGCGCCTGAGACGAGTGGGGTGAAGATCCAGGTCCTTGAA
GACAACAAGGGAGCTCTTGCCCTGGTGCAGAACCCCTTCAGCTCGGCGAG
GAGCAAGCACATCGACGTGCGGTACCACTTTATCCGCGAGCTCTTCAAGT
CGGGGAAGATCACCGCAGAGAAGGCCCTGATGAACCTCCCGGAGTAG
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protein sequence of EsuBft789_10a-0001

>EsuBft789_10 ID=EsuBft789_10|Name=EsuBft789_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=748bp
MGAPAAPGNGMQGDEGGGSPSPSSGGGDFGGGDDPADNSSNSNNSSGPSY
VSNNHDGGGSEPLSGDSGDESSGGSEPFSSTSSHDGSNDDGDGSEAVDPG
SDDDGGGETGDPGENDDDGNKGGEPATLEELKYDPADSRYPSGTGGKKLL
WGESSAGQLRHVLQPGRTRKQTRELRSSEEEPSEGPAPEEAPLSTVLETE
NGPEIVAEYIRESLLEERMQDEQAHREELKKQLQYDLVKALHPDAGELEL
AFSANEKDNGSPQPLLDPELSVPSPIGQKPNDVEAVPLIYRDAMDSKYKV
FWEAATVKENGASACPSTTSIKTVVVVANEKKTKMFHWDIKQAYIHAKLK
EELFLRVPQGCGDMSGKVCKVERALHGLKQSVREWGFEAADSLVANGSEQ
CRADPCVFRRMVDGAVVGLIMTYVDDILLVASEQERQELLASLQKIFPVK
DLGECTWYDGIGIELDLENGITKLSQTAYIESIIKRFNVTSTAPTPAVPG
ADLGPKRDDEPTVDKPVREALGCLMWVVHTRPDIALPLNKVQKVAHSPTD
RIWQALLRVMSHLNATKDLSLTYVRGSGLDLGVWVDASYADDVVDRLILX
PDIALPLNKVQKVAHSPTDRIWQALLRVMSHLNATKDLSLTYVRGSGLDL
GVWVDASYADDVVDRQYLAAGERVKEALHVRAVLSFVAPETSGVKIQVLE
DNKGALALVQNPFSSARSKHIDVRYHFIRELFKSGKITAEKALMNLPE
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mRNA from alignment at Scaffold_176:162127..165000+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft789_10a-0001 ID=EsuBft789_10a-0001|Name=EsuBft789_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2874bp|location=Sequence derived from alignment at Scaffold_176:162127..165000+ (Ectocarpus subulatus male Bft15b)
ATGGGGGCGCCTGCGGCACCCGGAAATGGGATGCAGGGGGACGAAGGCGG
AGGTTCCCCGTCGCCCTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACAACAGTAGTGGCCCCAGCTAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCTTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCCGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACCCCGGTGAGAACGATGA
TGACGGCAATAAAGGCGGTGAGCCTGCGACGCTCGAGGAGTTGAAGTACG
ACCCCGCCGACAGCCGCTACCCGTCAGGAACGGGAGGGAAGAAACTTCTT
TGGGGAGAGTCGAGCGCCGGCCAGCTGCGCCATGTGCTCCAGCCCGGCCG
CACCCGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGAGCCGAGCG
AGGGGCCAGCCCCCGAGGAGGCGCCGTTATCAACTGTCCTGGAGACCGAG
AACGGTCCGGAGATCGTTGCGGAATATATCCGCGAATCGCTGTTGGAGGA
GCGCATGCAAGACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCAGTTAC
AGTACGATCTAGTGAAGGCGCTCCATCCTGATGCAGGGGAGCTGGAGCTG
GCATTCAGTGCAAACGAAAAGGACAACGGGTCTCCGCAACCACTCCTTGA
CCCAGAGCTAAGTGTTCCCTCGCCGATCGGGCAGAAGCCTAACGATGTAG
AGGCTGTCCCGCTCATATACAGAGATGCGATGGATTCCAAGTACAAGGTG
TTTTGGGAAGCGGCGACAGTGAAAGAGAACGGTGGTCTAGACAAGGCGGG
GACTTTCACGAAAATTGGAAACTTCCCGAGGGGAGGAAGGCAGTGAGTTC
GAAGTGGGTGTTTTCGTACAAGACGAACGAGAAGGGTATGATCACCGCCT
TCAAAGCCCGAATGGTTGCGCGTGGTTTCTCACAGATTCCGGGGGTAGAT
TTCCACCACTCAGCTTCTGCATGCCCGNGTGTTTTGGGAAGCGGCGACAG
TGAAAGAGAACGGTGGTCTAGACAAGGCGGGGACTTTCACGAAAATTGGA
AACTTCCCGAGGGGAGGAAGGCAGTGAGTTCGAAGTGGGTGTTTTCGTAC
AAGACGAACGAGAAGGGTATGATCACCGCCTTCAAAGCCCGAATGGTTGC
GCGTGGTTTCTCACCACTCAGCTTCTGCATGCCCGTCTACGACGTCCATC
AAAACCGTGGTTGTCGTAGCCAACGAGAAGAAAACTAAGATGTTCCACTG
GGACATTAAACAAGCGTACATTCACGCCAAGCTCAAAGAAGAGCTTTTTC
TCAGGGTTCCCCAGGGTTGTGGTGACATGTCTGGCAAGGTGTGTAAGGTT
GAGCGTGCACTGCATGGCCTGAAACAAAGCGTTCGCGAATGGGGGTTTGA
AGCTGCTGATTCCCTCGTCGCGAATGGGTCCGAGCAGTGCAGGGCTGACC
CGTGTGTTTTCCGTAGGATGGTTGACGGAGCGGTCGTAGGTCTGATCATG
ACCTACGTAGACGACATTTTGTTGGTGGCGTCCGAGCAAGAGCGTCAAGA
GTTGCTTGCTTCCCTCCAGAAGATTTTTCCGGTGAAGGACTTGGGAGAAT
GCACGTGGTATGATGGGATTGGCATTGAGTTGGACCTAGAGAACGGCATC
ACCAAATTGTCCCAGACGGCATACATCGAGAGCATCATCAAGCGGTTTAA
CGTGACTTCTACCGCCCCCACGCCTGCTGTCCCCGGCGCTGACCTAGGGC
CGAAACGAGATGACGAGCCCACGGTGGACAAGCCAGTGAGGGAGGCACTC
GGGTGCCTGATGTGGGTGGTGCATACGAGGCCGGACATCGCTCTGCCGTT
GAACAAGGTCCAGAAGGTGGCTCACTCTCCCACCGACAGGATATGGCAGG
CGCTTCTGAGGGTCATGTCTCACCTCAACGCCACGAAGGACCTGAGCCTC
ACCTACGTGCGGGGGTCAGGGCTAGATCTGGGAGTGTGGGTCGATGCCAG
CTACGCCGACGACGTTGTTGACAGGCGTTAGACGATGGGACTAGCCGTAA
CCGCAGGTGGTAATACGGTGAACGGAACCACAAAAACGCAGCGTGTGCCG
GCGCAGTCATCCTCNAGCCGGACATCGCTCTGCCGTTGAACAAGGTCCAG
AAGGTGGCTCACTCTCCCACCGACAGGATATGGCAGGCGCTTCTGAGGGT
CATGTCTCACCTCAACGCCACGAAGGACCTGAGCCTCACCTACGTGCGGG
GGTCAGGGCTAGATCTGGGAGTGTGGGTCGATGCCAGCTACGCCGACGAC
GTTGTTGACAGGCGTTAGACGATGGGACTAGCCGTAACCGCAGGTGGTAA
TACGGTGAACGGAACCACAAAAACGCAGCGTGTGCCGGCGCAGTCATCCT
CGGAGGCAGAGTATCTAGCAGCCGGGGAGAGAGTGAAGGAGGCGTTGCAT
GTGCGTGCGGTTCTATCTTTCGTAGCGCCTGAGACGAGTGGGGTGAAGAT
CCAGGTCCTTGAAGACAACAAGGGAGCTCTTGCCCTGGTGCAGAACCCCT
TCAGCTCGGCGAGGAGCAAGCACATCGACGTGCGGTACCACTTTATCCGC
GAGCTCTTCAAGTCGGGGAAGATCACCGCAGAGTATAGAGCAGCGCGCCG
ACATACTGACCAGGGTCCTTGGTTGGACCAAACGGGAGTACTACAGGAAG
GCCCTGATGAACCTCCCGGAGTAG
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Coding sequence (CDS) from alignment at Scaffold_176:162127..165000+

>EsuBft789_10a-0001 ID=EsuBft789_10a-0001|Name=EsuBft789_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2247bp|location=Sequence derived from alignment at Scaffold_176:162127..165000+ (Ectocarpus subulatus male Bft15b)
ATGGGGGCGCCTGCGGCACCCGGAAATGGGATGCAGGGGGACGAAGGCGG
AGGTTCCCCGTCGCCCTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATG
ACCCCGCCGACAACAGCAGCAACAGCAACAACAGTAGTGGCCCCAGCTAC
GTCTCCAACAACCACGACGGAGGCGGCAGCGAGCCACTCAGCGGCGACTC
TGGTGATGAGAGCAGCGGCGGGAGCGAGCCCTTCAGCAGCACATCTAGCC
ACGACGGCAGCAACGACGACGGTGACGGCAGCGAGGCCGTCGACCCCGGC
AGCGATGACGATGGCGGCGGCGAGACAGGCGACCCCGGTGAGAACGATGA
TGACGGCAATAAAGGCGGTGAGCCTGCGACGCTCGAGGAGTTGAAGTACG
ACCCCGCCGACAGCCGCTACCCGTCAGGAACGGGAGGGAAGAAACTTCTT
TGGGGAGAGTCGAGCGCCGGCCAGCTGCGCCATGTGCTCCAGCCCGGCCG
CACCCGGAAGCAGACCCGGGAGTTGCGGAGCTCCGAGGAAGAGCCGAGCG
AGGGGCCAGCCCCCGAGGAGGCGCCGTTATCAACTGTCCTGGAGACCGAG
AACGGTCCGGAGATCGTTGCGGAATATATCCGCGAATCGCTGTTGGAGGA
GCGCATGCAAGACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCAGTTAC
AGTACGATCTAGTGAAGGCGCTCCATCCTGATGCAGGGGAGCTGGAGCTG
GCATTCAGTGCAAACGAAAAGGACAACGGGTCTCCGCAACCACTCCTTGA
CCCAGAGCTAAGTGTTCCCTCGCCGATCGGGCAGAAGCCTAACGATGTAG
AGGCTGTCCCGCTCATATACAGAGATGCGATGGATTCCAAGTACAAGGTG
TTTTGGGAAGCGGCGACAGTGAAAGAGAACGGTGCTTCTGCATGCCCGTC
TACGACGTCCATCAAAACCGTGGTTGTCGTAGCCAACGAGAAGAAAACTA
AGATGTTCCACTGGGACATTAAACAAGCGTACATTCACGCCAAGCTCAAA
GAAGAGCTTTTTCTCAGGGTTCCCCAGGGTTGTGGTGACATGTCTGGCAA
GGTGTGTAAGGTTGAGCGTGCACTGCATGGCCTGAAACAAAGCGTTCGCG
AATGGGGGTTTGAAGCTGCTGATTCCCTCGTCGCGAATGGGTCCGAGCAG
TGCAGGGCTGACCCGTGTGTTTTCCGTAGGATGGTTGACGGAGCGGTCGT
AGGTCTGATCATGACCTACGTAGACGACATTTTGTTGGTGGCGTCCGAGC
AAGAGCGTCAAGAGTTGCTTGCTTCCCTCCAGAAGATTTTTCCGGTGAAG
GACTTGGGAGAATGCACGTGGTATGATGGGATTGGCATTGAGTTGGACCT
AGAGAACGGCATCACCAAATTGTCCCAGACGGCATACATCGAGAGCATCA
TCAAGCGGTTTAACGTGACTTCTACCGCCCCCACGCCTGCTGTCCCCGGC
GCTGACCTAGGGCCGAAACGAGATGACGAGCCCACGGTGGACAAGCCAGT
GAGGGAGGCACTCGGGTGCCTGATGTGGGTGGTGCATACGAGGCCGGACA
TCGCTCTGCCGTTGAACAAGGTCCAGAAGGTGGCTCACTCTCCCACCGAC
AGGATATGGCAGGCGCTTCTGAGGGTCATGTCTCACCTCAACGCCACGAA
GGACCTGAGCCTCACCTACGTGCGGGGGTCAGGGCTAGATCTGGGAGTGT
GGGTCGATGCCAGCTACGCCGACGACGTTGTTGACAGGCTCATCCTCNAG
CCGGACATCGCTCTGCCGTTGAACAAGGTCCAGAAGGTGGCTCACTCTCC
CACCGACAGGATATGGCAGGCGCTTCTGAGGGTCATGTCTCACCTCAACG
CCACGAAGGACCTGAGCCTCACCTACGTGCGGGGGTCAGGGCTAGATCTG
GGAGTGTGGGTCGATGCCAGCTACGCCGACGACGTTGTTGACAGGCAGTA
TCTAGCAGCCGGGGAGAGAGTGAAGGAGGCGTTGCATGTGCGTGCGGTTC
TATCTTTCGTAGCGCCTGAGACGAGTGGGGTGAAGATCCAGGTCCTTGAA
GACAACAAGGGAGCTCTTGCCCTGGTGCAGAACCCCTTCAGCTCGGCGAG
GAGCAAGCACATCGACGTGCGGTACCACTTTATCCGCGAGCTCTTCAAGT
CGGGGAAGATCACCGCAGAGAAGGCCCTGATGAACCTCCCGGAGTAG
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