EsuBft785_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft785_8a-0001
Unique NameEsuBft785_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:86833..87413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft785_8
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length58
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft785_8aEsuBft785_8aEctocarpus subulatus male Bft15bgeneScaffold_647 86833..87413 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_8a-0001-exonEsuBft785_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 86833..87413 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_8a-0001-exonagat-three_prime_utr-21467Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 86833..87002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_8a-0001-cdsEsuBft785_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 87003..87413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_8a-0001EsuBft785_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 87003..87413 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft785_8a-0001 ID=EsuBft785_8a-0001|Name=EsuBft785_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=581bp|location=Sequence derived from alignment at Scaffold_647:86833..87413- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCACTGCTGGCTGGAACGAACTTGTCTACCGGCGGCGACGACGA
GGAGGACGAACAGGACCAGGGCGGCGGCGGTGAGAACACGGGGCGCGAGT
GCCGTGCCCCACGTGCGCCACCGGGTTATGAAGAACTGTCGTCTCACTTC
GGCGCCCTGGAAGTGGCAGCAGAGGACAGCAGTGGCAACGGAGACGCGGC
GTTCTACCTAACGAAAGCGAAGATGTCGACGATCGTAGCGCATTCCGCTA
GGCGGGTGCGCCAGACATTAGAGGATTTGTCGCGACGTAGAGTTCATGGT
TGTTTCTTTTTCTTGCGGTTCGCTTCCTGTCGTGTACTTGTAGTTTTTAT
TTTGTTCTCTTGCAACATCGAAGCGGGTACGCCAGGCAGACACTCCAGTG
TCGCGACGTAGTTTGGGGAGGAGATACAACTGTAGTGCAGCAGTATTAAA
TTGTTGTTTTCTTGCAGTGCGCTTCCTGTCGTGTTTCTTTTTCTGTTTGG
TCTTTTGCATCTTGCAACATCCAAGGAGGGGCTCCAGGGCTGAGATATAG
CTACGTCCACTTGGTACGAACGGGAGCCTTA
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protein sequence of EsuBft785_8a-0001

>EsuBft785_8 ID=EsuBft785_8|Name=EsuBft785_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MTALLAGTNLSTGGDDEEDEQDQGGGGENTGRECRAPRAPPGYEELSSHF
GALEVAAEDSSGNGDAAFYLTKAKMSTIVAHSARRVRQTLEDLSRRRVHG
CFFFLRFASCRVLVVFILFSCNIEAGTPGRHSSVAT
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mRNA from alignment at Scaffold_647:86833..87413-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft785_8a-0001 ID=EsuBft785_8a-0001|Name=EsuBft785_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=581bp|location=Sequence derived from alignment at Scaffold_647:86833..87413- (Ectocarpus subulatus male Bft15b)
ATGACAGCACTGCTGGCTGGAACGAACTTGTCTACCGGCGGCGACGACGA
GGAGGACGAACAGGACCAGGGCGGCGGCGGTGAGAACACGGGGCGCGAGT
GCCGTGCCCCACGTGCGCCACCGGGTTATGAAGAACTGTCGTCTCACTTC
GGCGCCCTGGAAGTGGCAGCAGAGGACAGCAGTGGCAACGGAGACGCGGC
GTTCTACCTAACGAAAGCGAAGATGTCGACGATCGTAGCGCATTCCGCTA
GGCGGGTGCGCCAGACATTAGAGGATTTGTCGCGACGTAGAGTTCATGGT
TGTTTCTTTTTCTTGCGGTTCGCTTCCTGTCGTGTACTTGTAGTTTTTAT
TTTGTTCTCTTGCAACATCGAAGCGGGTACGCCAGGCAGACACTCCAGTG
TCGCGACGTAGTTTGGGGAGGAGATACAACTGTAGTGCAGCAGTATTAAA
TTGTTGTTTTCTTGCAGTGCGCTTCCTGTCGTGTTTCTTTTTCTGTTTGG
TCTTTTGCATCTTGCAACATCCAAGGAGGGGCTCCAGGGCTGAGATATAG
CTACGTCCACTTGGTACGAACGGGAGCCTTA
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Coding sequence (CDS) from alignment at Scaffold_647:86833..87413-

>EsuBft785_8a-0001 ID=EsuBft785_8a-0001|Name=EsuBft785_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=411bp|location=Sequence derived from alignment at Scaffold_647:86833..87413- (Ectocarpus subulatus male Bft15b)
ATGACAGCACTGCTGGCTGGAACGAACTTGTCTACCGGCGGCGACGACGA
GGAGGACGAACAGGACCAGGGCGGCGGCGGTGAGAACACGGGGCGCGAGT
GCCGTGCCCCACGTGCGCCACCGGGTTATGAAGAACTGTCGTCTCACTTC
GGCGCCCTGGAAGTGGCAGCAGAGGACAGCAGTGGCAACGGAGACGCGGC
GTTCTACCTAACGAAAGCGAAGATGTCGACGATCGTAGCGCATTCCGCTA
GGCGGGTGCGCCAGACATTAGAGGATTTGTCGCGACGTAGAGTTCATGGT
TGTTTCTTTTTCTTGCGGTTCGCTTCCTGTCGTGTACTTGTAGTTTTTAT
TTTGTTCTCTTGCAACATCGAAGCGGGTACGCCAGGCAGACACTCCAGTG
TCGCGACGTAG
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