EsuBft785_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft785_7a-0001
Unique NameEsuBft785_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:91983..93753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LSV3
ProteomeIdEsuBft785_7
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR005069
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length144
Hectar predicted targeting categoryother localisation
Evalue2.34e-250
EggNOG OGs2C6NG@1|root,2SGR5@2759|Eukaryota
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferase
Ec32 orthologEc-26_001550.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionNucleotide-diphospho-sugar transferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft785_7aEsuBft785_7aEctocarpus subulatus male Bft15bgeneScaffold_647 91983..93753 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_7a-0001-exonagat-exon-102403Ectocarpus subulatus male Bft15bexonScaffold_647 91983..92019 +
EsuBft785_7a-0001-exonEsuBft785_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 92342..93753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_7a-0001-cdsEsuBft785_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 91983..92019 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_7a-0001-exonagat-three_prime_utr-21466Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 93430..93753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_7a-0001EsuBft785_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 91983..93429 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft785_7a-0001 ID=EsuBft785_7a-0001|Name=EsuBft785_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1449bp|location=Sequence derived from alignment at Scaffold_647:91983..93753+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTACGATACAGGGATATATTGGGTGTGCCGAAGTGGAGCAAGAAC
TCCGCTACATTCGAACGGTCCGACAAACCGATCACTAGAGTACCCAATGG
GATGGGATTGGACCCCAAGCGCTCGGATGCGGTGGTATTGGGTGCTTGCT
TGTTTGGTGGCACTTCTGAGGACATCCGTGGGTGCCGGCGGCCGGGCTGA
TAACCGTGACGAGGATAAAGTTACCATCCACACAAGGGAGTGGGCCAACG
CCACCGGTAGGGGAACCCTTCCAGCAATATCAAGGCATGCGTCTTGCGCC
GATATTGTTGCTTGGTTGCCTCCCCAATCACAACCGGCGGTGGTGTTCCA
GGTTGTGTCCGCAGCTTATGTCAGCGTGCAAACGAATTTTATTTCGAACA
TGGAGCTGCATTCGACGTTCTCCCGAGAAAACATGTACCTCATTTGTCTA
GACGAGGAATCTGTAGAGATTTTCGGGGCTCTGGGGATACGTTGCGTTCG
CTTTGGCTGCATGGGTTGCCCAGTGTCACGCCACCACATATGGGCGTTGA
GGATTGAAGTCAGCGTATGTCTTTTGAAAGCTGGCATAGACGTTTTGATG
TCGGACGCCGACGCAGTTTGGCTCCTCGACCCGATGGATGACTTCGACTC
TGATGATTATAGAGATAGCAGCATTGTCGCTTCGAGGGGTGCAATGCCGG
TTCCCTTGTTCCGCACGTGGGGGGCGACTATATGTATGGGCTTTGTCTTG
TTCCGCGCTGGGAGCAACGCAATTTATGAATTCATGGAGGTCGTGGGAGA
GTTCACGGAAGAATTGGAGAATGATCAACAGGCGGTGAATCTAGCGTTGC
AAAAGCTCGACGTCGTCTGGGACCCAACGAGTGATATGAGTTTCTCCGAC
AGCACGCGGCCAGGTGTGGGGGTGGTAACTAGCATTACTAGTGGGGAATC
GTTGATAGTGTCTCTTCTACCGCACAACAAGTACACACGAAGCTGCCGGC
GAACACCAATTTGCATCGAGACTGTTGTGGCCCACTGCATCAGCACTGAC
AAAGGAAAAGGGATGGCGACATGGATGAAGGAGGCACACCTGTGGAACGT
TCCAGACGACAACGACAGCAACTGATGGGGCTCCGAGGTTATGACGCGAA
AGCCATCAACCATTTGGGTAGCGTTGAGACAAGAAACCTCGCTTTCAGAG
TTGTATCGCAAGTCGACCAGCGCTTTGCAAGAGTTTGGAGACAACTGTTG
GATTGTCAGAGAGCAATAAACTTCGTTGTTTGCTGTTGTAGCGAATCTCA
CGGATTGAGTTCAGTGGACACGACTGAGTTGGTGTAGAAATACCGACGTC
GGTAGCACGGGTGTTGGTGACGCCGAAAGCCGGACGAAAGGCACGGGAGG
AGAAAATATATTATCTGCCGAGGACGGAGTACCGACTATACATAGCTCC
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protein sequence of EsuBft785_7a-0001

>EsuBft785_7 ID=EsuBft785_7|Name=EsuBft785_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=374bp
MKYDTGIYWVCRSGARTPLHSNGPTNRSLEYPMGWDWTPSARMRWYWVLA
CLVALLRTSVGAGGRADNRDEDKVTIHTREWANATGRGTLPAISRHASCA
DIVAWLPPQSQPAVVFQVVSAAYVSVQTNFISNMELHSTFSRENMYLICL
DEESVEIFGALGIRCVRFGCMGCPVSRHHIWALRIEVSVCLLKAGIDVLM
SDADAVWLLDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVL
FRAGSNAIYEFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSD
STRPGVGVVTSITSGESLIVSLLPHNKYTRSCRRTPICIETVVAHCISTD
KGKGMATWMKEAHLWNVPDDNDSN
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mRNA from alignment at Scaffold_647:91983..93753+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft785_7a-0001 ID=EsuBft785_7a-0001|Name=EsuBft785_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1771bp|location=Sequence derived from alignment at Scaffold_647:91983..93753+ (Ectocarpus subulatus male Bft15b)
ATGAAGTACGATACAGGGATATATTGGGTGTGCCGAAGTAATACCTGCTG
GTTCGAGGGCTCCCAGACGTAAAAGTAAAATCGAGAGGTGTGCTAGCTGA
ATACTGGCAGGGAAGTCCCAATCGCAGCTGTTTGGGTCGTACGGCCTGTC
CAACATGTCGCTCGGATATCGTAGGACCATTCTATCAGGATTCATGTTCT
CTACTCTCCGCAGCATCGTCTTGCCCGTGATTAATGTGTTGTCGTGGGCA
CGCGTGAGACCCAATCCGAACGATCTCACCCGAACTTGCCTGACTGAGCA
GGCAGACGAGTACAAGCAAATCTTGACCTGACATCTGTAATGTTTTTCTC
CTTGAGCAGGTGGAGCAAGAACTCCGCTACATTCGAACGGTCCGACAAAC
CGATCACTAGAGTACCCAATGGGATGGGATTGGACCCCAAGCGCTCGGAT
GCGGTGGTATTGGGTGCTTGCTTGTTTGGTGGCACTTCTGAGGACATCCG
TGGGTGCCGGCGGCCGGGCTGATAACCGTGACGAGGATAAAGTTACCATC
CACACAAGGGAGTGGGCCAACGCCACCGGTAGGGGAACCCTTCCAGCAAT
ATCAAGGCATGCGTCTTGCGCCGATATTGTTGCTTGGTTGCCTCCCCAAT
CACAACCGGCGGTGGTGTTCCAGGTTGTGTCCGCAGCTTATGTCAGCGTG
CAAACGAATTTTATTTCGAACATGGAGCTGCATTCGACGTTCTCCCGAGA
AAACATGTACCTCATTTGTCTAGACGAGGAATCTGTAGAGATTTTCGGGG
CTCTGGGGATACGTTGCGTTCGCTTTGGCTGCATGGGTTGCCCAGTGTCA
CGCCACCACATATGGGCGTTGAGGATTGAAGTCAGCGTATGTCTTTTGAA
AGCTGGCATAGACGTTTTGATGTCGGACGCCGACGCAGTTTGGCTCCTCG
ACCCGATGGATGACTTCGACTCTGATGATTATAGAGATAGCAGCATTGTC
GCTTCGAGGGGTGCAATGCCGGTTCCCTTGTTCCGCACGTGGGGGGCGAC
TATATGTATGGGCTTTGTCTTGTTCCGCGCTGGGAGCAACGCAATTTATG
AATTCATGGAGGTCGTGGGAGAGTTCACGGAAGAATTGGAGAATGATCAA
CAGGCGGTGAATCTAGCGTTGCAAAAGCTCGACGTCGTCTGGGACCCAAC
GAGTGATATGAGTTTCTCCGACAGCACGCGGCCAGGTGTGGGGGTGGTAA
CTAGCATTACTAGTGGGGAATCGTTGATAGTGTCTCTTCTACCGCACAAC
AAGTACACACGAAGCTGCCGGCGAACACCAATTTGCATCGAGACTGTTGT
GGCCCACTGCATCAGCACTGACAAAGGAAAAGGGATGGCGACATGGATGA
AGGAGGCACACCTGTGGAACGTTCCAGACGACAACGACAGCAACTGATGG
GGCTCCGAGGTTATGACGCGAAAGCCATCAACCATTTGGGTAGCGTTGAG
ACAAGAAACCTCGCTTTCAGAGTTGTATCGCAAGTCGACCAGCGCTTTGC
AAGAGTTTGGAGACAACTGTTGGATTGTCAGAGAGCAATAAACTTCGTTG
TTTGCTGTTGTAGCGAATCTCACGGATTGAGTTCAGTGGACACGACTGAG
TTGGTGTAGAAATACCGACGTCGGTAGCACGGGTGTTGGTGACGCCGAAA
GCCGGACGAAAGGCACGGGAGGAGAAAATATATTATCTGCCGAGGACGGA
GTACCGACTATACATAGCTCC
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Coding sequence (CDS) from alignment at Scaffold_647:91983..93753+

>EsuBft785_7a-0001 ID=EsuBft785_7a-0001|Name=EsuBft785_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1125bp|location=Sequence derived from alignment at Scaffold_647:91983..93753+ (Ectocarpus subulatus male Bft15b)
ATGAAGTACGATACAGGGATATATTGGGTGTGCCGAAGTGGAGCAAGAAC
TCCGCTACATTCGAACGGTCCGACAAACCGATCACTAGAGTACCCAATGG
GATGGGATTGGACCCCAAGCGCTCGGATGCGGTGGTATTGGGTGCTTGCT
TGTTTGGTGGCACTTCTGAGGACATCCGTGGGTGCCGGCGGCCGGGCTGA
TAACCGTGACGAGGATAAAGTTACCATCCACACAAGGGAGTGGGCCAACG
CCACCGGTAGGGGAACCCTTCCAGCAATATCAAGGCATGCGTCTTGCGCC
GATATTGTTGCTTGGTTGCCTCCCCAATCACAACCGGCGGTGGTGTTCCA
GGTTGTGTCCGCAGCTTATGTCAGCGTGCAAACGAATTTTATTTCGAACA
TGGAGCTGCATTCGACGTTCTCCCGAGAAAACATGTACCTCATTTGTCTA
GACGAGGAATCTGTAGAGATTTTCGGGGCTCTGGGGATACGTTGCGTTCG
CTTTGGCTGCATGGGTTGCCCAGTGTCACGCCACCACATATGGGCGTTGA
GGATTGAAGTCAGCGTATGTCTTTTGAAAGCTGGCATAGACGTTTTGATG
TCGGACGCCGACGCAGTTTGGCTCCTCGACCCGATGGATGACTTCGACTC
TGATGATTATAGAGATAGCAGCATTGTCGCTTCGAGGGGTGCAATGCCGG
TTCCCTTGTTCCGCACGTGGGGGGCGACTATATGTATGGGCTTTGTCTTG
TTCCGCGCTGGGAGCAACGCAATTTATGAATTCATGGAGGTCGTGGGAGA
GTTCACGGAAGAATTGGAGAATGATCAACAGGCGGTGAATCTAGCGTTGC
AAAAGCTCGACGTCGTCTGGGACCCAACGAGTGATATGAGTTTCTCCGAC
AGCACGCGGCCAGGTGTGGGGGTGGTAACTAGCATTACTAGTGGGGAATC
GTTGATAGTGTCTCTTCTACCGCACAACAAGTACACACGAAGCTGCCGGC
GAACACCAATTTGCATCGAGACTGTTGTGGCCCACTGCATCAGCACTGAC
AAAGGAAAAGGGATGGCGACATGGATGAAGGAGGCACACCTGTGGAACGT
TCCAGACGACAACGACAGCAACTGA
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