EsuBft785_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft785_6a-0001
Unique NameEsuBft785_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:96128..100172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LSV4
ProteomeIdEsuBft785_6
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsIPR005069
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length213
Hectar predicted targeting categorysignal peptide
Evalue1.57e-232
EggNOG OGs2C6NG@1|root,2SGR5@2759|Eukaryota
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferase
Ec32 orthologEc-26_001560.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionNucleotide-diphospho-sugar transferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft785_6aEsuBft785_6aEctocarpus subulatus male Bft15bgeneScaffold_647 96128..100172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_6a-0001EsuBft785_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 96232..99109 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_6a-0001-exonagat-exon-102400Ectocarpus subulatus male Bft15bexonScaffold_647 96128..96417 +
EsuBft785_6a-0001-exonEsuBft785_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 97659..97880 +
EsuBft785_6a-0001-exonagat-exon-102402Ectocarpus subulatus male Bft15bexonScaffold_647 98398..98661 +
EsuBft785_6a-0001-exonagat-exon-102401Ectocarpus subulatus male Bft15bexonScaffold_647 98819..100172 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_6a-0001-exonagat-five_prime_utr-13839Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_647 96128..96231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_6a-0001-cdsEsuBft785_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 96232..96417 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_6a-0001-exonagat-three_prime_utr-21465Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 99110..100172 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft785_6a-0001 ID=EsuBft785_6a-0001|Name=EsuBft785_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2130bp|location=Sequence derived from alignment at Scaffold_647:96128..100172+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCAATCAACAATTGCTCTGTCCCTCAGCGGAAGATATCTGAGCGAACACT
CCAAGGCCACGCACGGGGCACACTGCTGTATTGTCGTACGGTCTGCACGG
GTCCATGGCGAGTTTCTTCATATCGTGCTTGGTATTGGCCACTGCGGTGT
TTTGCGGACGCTCGGCAGCGGAGGAGGTGGCCCATGGACCTGCGGTGTCC
AGACGGCTTCCGGCGATTACACCCAAGGCAACATGCGCCGACTGGATGAA
GTGGATACCTCCTCGCTCGGACCCCGCGATCGTGATGCAAGTTGTGAGCA
GGCACTACTTGGAATTGGAGCGAAATTTTATTCGGCTGATGGAGCTCAAC
TCGGCCTTGACCCGCGACCACCTATATCTCATGTGTATGGACAACGTGTC
GGTGCACTTCTTCGAATCTTCCATGAATATCCGCTGCATCCCTCTTACCG
CGTTCGACTTCCCGTCCCATGCGGAGATCTGGGTTTTGAGGGCCCGTGTG
GTGTCTTGTCTGGTGGAAGCGGGCCAAGATGTGATAATGTCCGATGCAGA
TGCTCTCTGGCTGGACGACCCGTTCAAGGATTTCAACCTTCCTCGCGTGA
TCGACAGCAGCGTCGTCGCGTCCAGGGGGAAATTCCCCAAGCCGCTTGGT
CTAGAATGGGGGGCGACGATGTGCATGGGTTTTGTTCTTTTTCGAGCGAC
AGGGAGAAGGGTTGTGGGAGAATTCCTCGAAGTCATGGATGCCCTGGTTC
ACAAGAACAAGGATGACCAGATCTCGGTTAATCTGGCGGCAGAGAACCTG
GGGATAGTGTGGGACCAGGAGAGCGACATGCGATACGTAGAGAGTGACTC
TTTCGGCTTCGGGACCATTGACACTCTTGTCGACGAAAACAATCAGCCAT
TCTCGGTGACGTTACTGCCGCACAACGCGTACACCCGCGTCTGCGACGAG
ACACCAATTTCCAACAAAACTGTCGTGGCGCATTGTTGGGCACCTAAGAC
AGCCGACAGCAAGACTGGTTGGATGGTGCAATCTAAGCTCTGGTTCAGTG
ACAACGAAACACGCTGAGATGAGGGCAGCGGAGAGTCGCGCCAAAGGCAA
AGATCTGGTGTCTGACACCAGCATCCGCTGTGTAATCCATGGTGAAAGAG
ATTGGTCCAGTCGTCGAGGATCGAGAGCCCATGACGTTTGCTACGGACTA
GGCGATTGGCTGCATCTATCTGCAGTCCGTGCTGCTACGCGTAGCTTCAC
GTAGATCATGAATGATGGGAACGTACCACCTTCCGATATTCGAGGCCCAT
GGGAGTTCGGTGGTCTAATACGGTAGATGGTTCGGCACAGCCGGAATTCT
GTCTGCTAGGCGTATGTACGGCATACACACGCCACCGTAACGACTGCCTT
GTCGTCAGAATACAGAAAGTGTCAAAATGATGACATGTAAATGGGTAGGA
AAGCGGCTTGCTGCGCAACGTCATTCTGGTAGGCAAAGGAACGTATCATT
TTTTTTGTGTTCGCCTGTGAAGTTCGGTGTCGGACGATTGAACCTGATTT
TTTGTGGAATGGTAACGAAAGTATCACTTTGTGGGGAACCTCTTGTGTGG
CATGCCTCCCGGCCATCCAAGAACGCGTGGTGGGTGTGAGAATGTTTGGA
CGTCCTTGGACGGTGCAGTCCCTTTCGTGCAGTATTGGGGAGTGGTATCG
TATCATCGGACATTTCCCAATTCATCACCGCTGTTCTCGTGTCGCAGCGG
GGGCATGAGCGCGTGGGGTACCGTAGAGTTCGCAGAGCAATAGGCGACAT
GCTGGCCAAGCACTGTGCTCAGTTCACGAAACAACGTGCAAAATTTCTCC
CGCACGAGGTACCCCTTTTGTCGGGGTGGGGGGGGGGGTTCCCACATTCA
ACCAATACAACGGCGAAGATCGAGAAGGAGAGCTTGATTTTGCGTTTTCG
CCCTTTGTTGCTTGCCTTTCGTGAAGTGTATGGTTTTCCCGGCGGCCATG
TCTTTTTTCGGACCCAAACTTCTTTGGGTTTCGGACGAACAATGTCGTAA
AGCTACAGTGGCAGTACTTTTCCGATTTGGCAATATTTGCAGTTATGATG
TACGAAAGAAGCCTATCTGTGAGACGAAGT
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protein sequence of EsuBft785_6a-0001

>EsuBft785_6 ID=EsuBft785_6|Name=EsuBft785_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=320bp
MASFFISCLVLATAVFCGRSAAEEVAHGPAVSRRLPAITPKATCADWMKW
IPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSV
HFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADA
LWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATG
RRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSF
GFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTA
DSKTGWMVQSKLWFSDNETR
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mRNA from alignment at Scaffold_647:96128..100172+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft785_6a-0001 ID=EsuBft785_6a-0001|Name=EsuBft785_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4045bp|location=Sequence derived from alignment at Scaffold_647:96128..100172+ (Ectocarpus subulatus male Bft15b)
TCAATCAACAATTGCTCTGTCCCTCAGCGGAAGATATCTGAGCGAACACT
CCAAGGCCACGCACGGGGCACACTGCTGTATTGTCGTACGGTCTGCACGG
GTCCATGGCGAGTTTCTTCATATCGTGCTTGGTATTGGCCACTGCGGTGT
TTTGCGGACGCTCGGCAGCGGAGGAGGTGGCCCATGGACCTGCGGTGTCC
AGACGGCTTCCGGCGATTACACCCAAGGCAACATGCGCCGACTGGATGAA
GTGGATACCTCCTCGCTCGGACCCCGCGATCGTGATGCAAGTGCGTATTT
GCCTGGAGTTGGCTAGTTAGCACCGGCCGCCAACAGGCAAACCGTACCAA
TACATCGGCCGCCTTGACTTGATGTAACTCCACCACAAAAAAGCTCAGTT
ATGCACGGGTGGGTAGGTGATGTTCTCACATCTGTGTCAGGTTTCGGCAA
GCAGACATTCTCACCCTCAAAGATGGGTGCTGCCCAATATGCTGACGTAC
CAGGCGAAACACTACACACATACCCAACGAACGCTATGTGTAGCGGAATG
CCTGTCTATTACTGCCTCATCTCATCCAAGCCTTCAGTCTATATGAACAA
TACAACCGCAAGGGCTGACACCTATGTGCGCAGCCAGCAAGTTGTTCGTG
ATCGTGATTTCCACAGTTTTTTTTGGTGCTGCCTGCGAGCAATCTTGTTG
GTACATTCGGTTCTCAATTTCAAATTGTTCGGGACTCGAGAAAAAGGCCC
GTTATTTGTGTGTGAGCTGTGAGCTCACGAAGATTCGACTCGTTGGACCG
TTACGTTGCCAGCAAAAAAGTGAGCCACCGAGACAACACCGTGGAAAACA
AGAAACATCCCGTCTCCTGTGGTTGGATTTGGACACGGCGGTGCTTTCCC
TTTCTTCTGGTATTCCCTTTCTCGTGGCACATGTACCCATCGGCTGACTT
ACTTATACAATATTTCAGCTCCAGTTCGACTTGTATGCCGCTGCTGTGGG
TTTGATTTTATGCTTGCTGGTTGACTGAAAGTCTAGAAGCCGCCTATTCG
CAATCGGCTATCCACGAATGCCGAGCGCAGTGGTTGTACCCAACCTTCCT
CGATAAGTTTCGGCGAGTGGTATGAGTGGTGGTGATTGCCACAGGGGGAA
ACAGGGTCTCGGATCATGTATTCACACAATCGTCCCTATGCTTCCATAAT
GCTTCAATTACCGTATCTGTCTTCGCCATTTAAGGCTTGTATCATAATAT
AGTCCATATTCCCTTCGAATACTTGGCTTTAGTGCACAGAAACGAATTGT
TGGGATGCCCAGACACGTGTGATCGTGTCATGTGCTTGGTCTATGCTTTG
ACTATTGTACGTGTCTACAACGTGGCCTCTAGACTACAGCTTTGGGGTCA
TGTATATCTTCATGTATATGATGTGACCGTCGGACATCATGTGTCTTGCT
GCAATTTTCTTTACCGGCCCTCGCGCTTTCCCTTTTACGCGCCTGCCACC
AAACTGCTGACTCTCGCTTGCACCGTTTCAGGTTGTGAGCAGGCACTACT
TGGAATTGGAGCGAAATTTTATTCGGCTGATGGAGCTCAACTCGGCCTTG
ACCCGCGACCACCTATATCTCATGTGTATGGACAACGTGTCGGTGCACTT
CTTCGAATCTTCCATGAATATCCGCTGCATCCCTCTTACCGCGTTCGACT
TCCCGTCCCATGCGGAGATCTGGGTTTTGAGGGCCCGTGTGGTGTCTTGT
CTGGTGAGCAGGGTGTGTCGTTGGTCTGGGTGCAGTTGTCCCGCGGATGC
ACAAGTTTTCAACATCCATCAAGATCTGACCCAGCAGGCGCGCGTCTAGT
CCTATTTTCCATTTGTGCAGGCACATTTATTGGAACTACGGATACCACTG
CTGTGGGTCTGCCATGCTTTCCTGCCCGCCTGAATGCGGGAGATTTGGAT
TATCACTTGCTCAATCTCCTGCCCAAGGTTGTGTGCTAGATTTTTACCGT
TTCATATTTCTTGCGAGAGCAGGTACATGCAGGAGTGAGTGTAGTCGATG
GAATTTCGTGTTACACAGACACTTTGTACTTGATACCAATGGAAATAATA
AGGAAAATCGTCCCGCCATTCCCTCCATAGACAGGCTGGAGGTGGTGCAT
CGCGCACAACACCATTTGATTTGTACCTCTGGCCACCCGTGACGCGGACT
TGGCCGAGAAGAGTGCATTACTTCTGCGCATCCTGATTGCAGCATACACC
TTCTTCTGCCCACCCTGCAGGTGGAAGCGGGCCAAGATGTGATAATGTCC
GATGCAGATGCTCTCTGGCTGGACGACCCGTTCAAGGATTTCAACCTTCC
TCGCGTGATCGACAGCAGCGTCGTCGCGTCCAGGGGGAAATTCCCCAAGC
CGCTTGGTCTAGAATGGGGGGCGACGATGTGCATGGGTTTTGTTCTTTTT
CGAGCGACAGGGAGAAGGGTTGTGGGAGAATTCCTCGAAGTCATGGATGC
CCTGGTTCACAAGAACAAGGATGACCAGATCTCGGTGAGTGCGTGAAAAT
GTGCAAGGTGTGAACATGAATGAAGCATATGTCTGTTTCTGTGGAACGTC
ATCCCCTAACTGCAATTGTCATCACACCCAGCTGTGCCGTGATGGTCATG
TGACGAATGAATCCTCCTTTGCCGACTGCACTGAAACTCAGGTTAATCTG
GCGGCAGAGAACCTGGGGATAGTGTGGGACCAGGAGAGCGACATGCGATA
CGTAGAGAGTGACTCTTTCGGCTTCGGGACCATTGACACTCTTGTCGACG
AAAACAATCAGCCATTCTCGGTGACGTTACTGCCGCACAACGCGTACACC
CGCGTCTGCGACGAGACACCAATTTCCAACAAAACTGTCGTGGCGCATTG
TTGGGCACCTAAGACAGCCGACAGCAAGACTGGTTGGATGGTGCAATCTA
AGCTCTGGTTCAGTGACAACGAAACACGCTGAGATGAGGGCAGCGGAGAG
TCGCGCCAAAGGCAAAGATCTGGTGTCTGACACCAGCATCCGCTGTGTAA
TCCATGGTGAAAGAGATTGGTCCAGTCGTCGAGGATCGAGAGCCCATGAC
GTTTGCTACGGACTAGGCGATTGGCTGCATCTATCTGCAGTCCGTGCTGC
TACGCGTAGCTTCACGTAGATCATGAATGATGGGAACGTACCACCTTCCG
ATATTCGAGGCCCATGGGAGTTCGGTGGTCTAATACGGTAGATGGTTCGG
CACAGCCGGAATTCTGTCTGCTAGGCGTATGTACGGCATACACACGCCAC
CGTAACGACTGCCTTGTCGTCAGAATACAGAAAGTGTCAAAATGATGACA
TGTAAATGGGTAGGAAAGCGGCTTGCTGCGCAACGTCATTCTGGTAGGCA
AAGGAACGTATCATTTTTTTTGTGTTCGCCTGTGAAGTTCGGTGTCGGAC
GATTGAACCTGATTTTTTGTGGAATGGTAACGAAAGTATCACTTTGTGGG
GAACCTCTTGTGTGGCATGCCTCCCGGCCATCCAAGAACGCGTGGTGGGT
GTGAGAATGTTTGGACGTCCTTGGACGGTGCAGTCCCTTTCGTGCAGTAT
TGGGGAGTGGTATCGTATCATCGGACATTTCCCAATTCATCACCGCTGTT
CTCGTGTCGCAGCGGGGGCATGAGCGCGTGGGGTACCGTAGAGTTCGCAG
AGCAATAGGCGACATGCTGGCCAAGCACTGTGCTCAGTTCACGAAACAAC
GTGCAAAATTTCTCCCGCACGAGGTACCCCTTTTGTCGGGGTGGGGGGGG
GGGTTCCCACATTCAACCAATACAACGGCGAAGATCGAGAAGGAGAGCTT
GATTTTGCGTTTTCGCCCTTTGTTGCTTGCCTTTCGTGAAGTGTATGGTT
TTCCCGGCGGCCATGTCTTTTTTCGGACCCAAACTTCTTTGGGTTTCGGA
CGAACAATGTCGTAAAGCTACAGTGGCAGTACTTTTCCGATTTGGCAATA
TTTGCAGTTATGATGTACGAAAGAAGCCTATCTGTGAGACGAAGT
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Coding sequence (CDS) from alignment at Scaffold_647:96128..100172+

>EsuBft785_6a-0001 ID=EsuBft785_6a-0001|Name=EsuBft785_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=963bp|location=Sequence derived from alignment at Scaffold_647:96128..100172+ (Ectocarpus subulatus male Bft15b)
ATGGCGAGTTTCTTCATATCGTGCTTGGTATTGGCCACTGCGGTGTTTTG
CGGACGCTCGGCAGCGGAGGAGGTGGCCCATGGACCTGCGGTGTCCAGAC
GGCTTCCGGCGATTACACCCAAGGCAACATGCGCCGACTGGATGAAGTGG
ATACCTCCTCGCTCGGACCCCGCGATCGTGATGCAAGTTGTGAGCAGGCA
CTACTTGGAATTGGAGCGAAATTTTATTCGGCTGATGGAGCTCAACTCGG
CCTTGACCCGCGACCACCTATATCTCATGTGTATGGACAACGTGTCGGTG
CACTTCTTCGAATCTTCCATGAATATCCGCTGCATCCCTCTTACCGCGTT
CGACTTCCCGTCCCATGCGGAGATCTGGGTTTTGAGGGCCCGTGTGGTGT
CTTGTCTGGTGGAAGCGGGCCAAGATGTGATAATGTCCGATGCAGATGCT
CTCTGGCTGGACGACCCGTTCAAGGATTTCAACCTTCCTCGCGTGATCGA
CAGCAGCGTCGTCGCGTCCAGGGGGAAATTCCCCAAGCCGCTTGGTCTAG
AATGGGGGGCGACGATGTGCATGGGTTTTGTTCTTTTTCGAGCGACAGGG
AGAAGGGTTGTGGGAGAATTCCTCGAAGTCATGGATGCCCTGGTTCACAA
GAACAAGGATGACCAGATCTCGGTTAATCTGGCGGCAGAGAACCTGGGGA
TAGTGTGGGACCAGGAGAGCGACATGCGATACGTAGAGAGTGACTCTTTC
GGCTTCGGGACCATTGACACTCTTGTCGACGAAAACAATCAGCCATTCTC
GGTGACGTTACTGCCGCACAACGCGTACACCCGCGTCTGCGACGAGACAC
CAATTTCCAACAAAACTGTCGTGGCGCATTGTTGGGCACCTAAGACAGCC
GACAGCAAGACTGGTTGGATGGTGCAATCTAAGCTCTGGTTCAGTGACAA
CGAAACACGCTGA
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