EsuBft785_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft785_10a-0001
Unique Name	EsuBft785_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_647	contig	Scaffold_647:71063..74499 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	144197.XP_008290989.1
ProteomeId	EsuBft785_10
Protein domains	PTHR23272
Protein domains	IPR008906
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	298
Evalue	7.7e-09
EggNOG OGs	KOG1121@1\|root,KOG1121@2759\|Eukaryota,39RW9@33154\|Opisthokonta,3BH13@33208\|Metazoa,3D40F@33213\|Bilateria,48HWP@7711\|Chordata,49G1T@7742\|Vertebrata,4A6PI@7898\|Actinopterygii
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-06_003400.2
Date last modified	2016-06-14
Date creation	2016-06-14
Description	BED zinc finger
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0046983

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft785_10a	EsuBft785_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_647 71063..74499 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft785_10a-0001-exon	agat-exon-102406	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 71063..73515 +
EsuBft785_10a-0001-exon	EsuBft785_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 73966..74499 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft785_10a-0001-cds	EsuBft785_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_647 71063..71857 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft785_10a-0001-exon	agat-three_prime_utr-21460	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_647 71858..73515 +
EsuBft785_10a-0001-exon	agat-three_prime_utr-21461	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_647 73966..74499 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft785_10a-0001	EsuBft785_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_647 71063..71857 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_647:71063..74499+
coding sequence from alignment at Scaffold_647:71063..74499+

spliced messenger RNA

>EsuBft785_10a-0001 ID=EsuBft785_10a-0001|Name=EsuBft785_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2987bp|location=Sequence derived from alignment at Scaffold_647:71063..74499+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCGACTATCGACTGGTCCAGCCGGATTGCCAAGGGGAAGGAGTC
CACTCCCGGCCCCATGGTACGCCACGCCGAACTCTCCAACGTCGCCTACA
CGGCCGTGAAAGTCATCAGCGAGGAGTTCAAGAAGCGCAACATCGGCACC
CCGGTTGAAGACGTCGAGTTTCTAGCCCTGTTCTTTGACCCGCGAAGCAA
GGACTTCGGCAAGGGCGTGTGTGGGGGAGAGGGGGGCCAGGAAAAAGCTC
TCGAGGCTCTTTCGACGGTGTCGATGAACTTGGTCGACACGGTCGAGCCA
GGCGGCGCCGCCGATGTGCCAGTCCCAGCTGCTGCCACCCCGCCGCCCGA
GAAGCGAGCAAGGGTGGCCACGACCGCGTACGAGAGGCGTCAGGCGCGGA
AGGTCCAGGAGGCAGCAGCTGCGCGGACGAGCGCGCGTAGAGACCAGCCG
TCTGTAACGGACCGCGTGCAGAAGGAGGTGGATGAATACACCAAGCTGCC
TGCCGCCGTCCCCGCGAAGGACTACGACGTCCTCGGTTTCTGGAGGGATG
CCGGCAGCCCGCGTCTTGACCCCCACGGCAACGTTGTTTCTGCCGCACAA
TTCCCCATCTTGTCCATGCTTGCTCGCGTGTACCTTTGCATTGACAGCAC
TAGTTGCCAATCAGAGAGGGAGTTTTCGGGGCTAGGATTCGTGTACAACA
ATCTTCGGCAAGCGATGGTGCCCGACCGGGTCGAGATGGTGATGTTCCTT
AGGTCTAACCCCCATCTTATTCCCGAGATCAATAAGTTGGNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGGAACCCGGCACGGAACCCTCCGGCGTTGTAGGCGGGT
GTGGGAAGCGTTCCCCGTTCTCCTTTTATTTTATTTTGATCGGTCTCCTC
GACGCTCTTTCTCGTTTGGTGCGGTAGCTGGTCTTTCTTTCTATCATTTT
GTTTCTCTTCCGAGTGGTTTTTGTACCCTATTTTTTTCTGTTTCTTCGTG
GGGTCGTGTATGCCGGGTTTTGAGACCACGGGCTCCAATCTTTTTTTTTT
TTAGAGCTAATGTGAGAAACAACAACAACAACAACACACGGACATCAATT
TGAGAAGAGTAATCAATTCAAGGGTCGGGCTGACAGGCGGTGTTATTCAA
CGTGCGCAGAACCCAGGCGGGGAAACAAAAAGGACCCATCTCAAACAGTT
TTTTTGCGGAAAAAAAAACTCCGCTATCGCTCCGTTTTTTTTTTCCCACG
CGCGCTTCGCGCGCGGAAAAAACTCCTATATGTCTAAAGATAGATTAGCA
ACGAATCCATAGCGTGAGCGTTGTTTTTTTCGATTTTTGGTTTTTGTGTT
GATTTGTTTGATTTTCTGAGAAATCAAGTTCAAGATTGACCGGTCGGTGG
AAATTGTCGCAAGTATTTCTGGTTTAATGGTTGGCAATGATGCAAACCGA
TAGGAATTCTAACGAATGTTTCTGGTTTAAGGGTTTTAGTGTTGTGACAA
GAATGCAGTTTGGGATGAAGGGAATGTCTTGCACTAAACTTTGTTTCGGT
CAGGATTGAGGATGGGGGTATGTGTGTGTCTACAACGGATATGGTGATTG
TGTGGTGTGGTTTCTCACTTTTTTCTTTCCTCTTTTTCCTCCTTCCTGTG
TCAATCAAGTCCTTTTCCCCGGCTATCACGCTACCACGGCTATCACGCCA
CGACTTTCACGCCAATCCTGGCTATCACGCCACCCGGCTATCCCGCCTTC
CGGACATCCATGTCCGTACATATTCGTTTGCACCCTGGCTATCACCATGG
CTATCACGTCACCAGGCTTCCACGCCACATCCAGAGATACCATACCCGAG
CTATCACGCTCCATCCCAAAGTAGAAGACTGTCACGCCCATCATAGTTCC
TATACTGCTGTACCGTTGGCGGCTACCGCGCCGCTGGCTCTTTTATTCCT
GAACAAAGGGACCCCGCGCGCCAAGGCACCGACGCACAAAGCTACTCAAC
ATCCAGCCACAACAGTTTATCAGCTCTTGTCTCAGGCAACTCAGGCTATC
TTGCCCCTTGATGACGATTGGGGCCCAACCTTCCTTC

protein sequence of EsuBft785_10a-0001

>EsuBft785_10 ID=EsuBft785_10|Name=EsuBft785_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=265bp
MESTIDWSSRIAKGKESTPGPMVRHAELSNVAYTAVKVISEEFKKRNIGT
PVEDVEFLALFFDPRSKDFGKGVCGGEGGQEKALEALSTVSMNLVDTVEP
GGAADVPVPAAATPPPEKRARVATTAYERRQARKVQEAAAARTSARRDQP
SVTDRVQKEVDEYTKLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQ
FPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFL
RSNPHLIPEINKLXX

mRNA from alignment at Scaffold_647:71063..74499+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft785_10a-0001 ID=EsuBft785_10a-0001|Name=EsuBft785_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3437bp|location=Sequence derived from alignment at Scaffold_647:71063..74499+ (Ectocarpus subulatus male Bft15b)
ATGGAGTCGACTATCGACTGGTCCAGCCGGATTGCCAAGGGGAAGGAGTC
CACTCCCGGCCCCATGGTACGCCACGCCGAACTCTCCAACGTCGCCTACA
CGGCCGTGAAAGTCATCAGCGAGGAGTTCAAGAAGCGCAACATCGGCACC
CCGGTTGAAGACGTCGAGTTTCTAGCCCTGTTCTTTGACCCGCGAAGCAA
GGACTTCGGCAAGGGCGTGTGTGGGGGAGAGGGGGGCCAGGAAAAAGCTC
TCGAGGCTCTTTCGACGGTGTCGATGAACTTGGTCGACACGGTCGAGCCA
GGCGGCGCCGCCGATGTGCCAGTCCCAGCTGCTGCCACCCCGCCGCCCGA
GAAGCGAGCAAGGGTGGCCACGACCGCGTACGAGAGGCGTCAGGCGCGGA
AGGTCCAGGAGGCAGCAGCTGCGCGGACGAGCGCGCGTAGAGACCAGCCG
TCTGTAACGGACCGCGTGCAGAAGGAGGTGGATGAATACACCAAGCTGCC
TGCCGCCGTCCCCGCGAAGGACTACGACGTCCTCGGTTTCTGGAGGGATG
CCGGCAGCCCGCGTCTTGACCCCCACGGCAACGTTGTTTCTGCCGCACAA
TTCCCCATCTTGTCCATGCTTGCTCGCGTGTACCTTTGCATTGACAGCAC
TAGTTGCCAATCAGAGAGGGAGTTTTCGGGGCTAGGATTCGTGTACAACA
ATCTTCGGCAAGCGATGGTGCCCGACCGGGTCGAGATGGTGATGTTCCTT
AGGTCTAACCCCCATCTTATTCCCGAGATCAATAAGTTGGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGGAACCCGGCACGGAACCCTCCGGCGTTGTAGGCGGGT
GTGGGAAGCGTTCCCCGTTCTCCTTTTATTTTATTTTGATCGGTCTCCTC
GACGCTCTTTCTCGTTTGGTGCGGTAGCTGGTCTTTCTTTCTATCATTTT
GTTTCTCTTCCGAGTGGTTTTTGTACCCTATTTTTTTCTGTTTCTTCGTG
GGGTCGTGTATGCCGGGTTTTGAGACCACGGGCTCCAATCTTTTTTTTTT
TTAGAGCTAATGTGAGAAACAACAACAACAACAACACACGGACATCAATT
TGAGAAGAGTAATCAATTCAAGGGTCGGGCTGACAGGCGGTGTTATTCAA
CGTGCGCAGAACCCAGGCGGGGAAACAAAAAGGACCCATCTCAAACAGTT
TTTTTGCGGAAAAAAAAACTCCGCTATCGCTCCGTTTTTTTTTTCCCACG
CGCGCTTCGCGCGCGGAAAAAACTCCTATATGTCTAAAGATAGATTAGCA
ACGAATCCATAGCGTGAGCGTTGTTTTTTTCGATTTTTGGTTTTTGTGTT
GATTTGTTTGATTTTCTGAGAAATCAAGTTCAAGATTGACCGGTCGGTGG
AAATTGTCGCAAGTATTTCTGGTTTAATGGTTGGCAATGATGCAAACCGA
TAGGAATTCTAACGAATGTTTCTGGTTTAAGGGTTTTAGTGTTGTGACAA
GAATGCAGTTTGGGATGAAGGGAATGTCTTGCACTAAACTTTGTTTCGGT
CAGGTATGTGGTATGTACGGGATGATAGTAAGGATAGTATATTAAAGTCC
GGGTGTGGTCTTGTCAATGTAGCGAGTAGGGGGGCTGTTAGCCGTTAGCA
CAGATTATTGCAAGCAAGAAATTTCCGAGCAGATGGAGCGGGGAGTTAAA
AGGAATTGATTGCACAGGAAGGAGGAAAAAGAGGAAAGAAAAACAAGTGA
GAAACCACAACACACAATCACCATATCCGTTGTAGACACACATATACCCC
CACCCTCAATCTTGTATATGTACGGCATTAAATGTTGGTACCATCAAACA
AATCGAATCTAAAGCAACCGTTGCTTTAGATTCGATTTGATGGTACCAAC
TTTGCCGTAAAGTCTATATCATGAAGGATTGATTGAGTGTGGGGGTATAT
GTATGTGTGTCTCGTTGCTTTGGATTCGATTTGATGGTACCCGTATATTA
CAGGATTGAGGATGGGGGTATGTGTGTGTCTACAACGGATATGGTGATTG
TGTGGTGTGGTTTCTCACTTTTTTCTTTCCTCTTTTTCCTCCTTCCTGTG
TCAATCAAGTCCTTTTCCCCGGCTATCACGCTACCACGGCTATCACGCCA
CGACTTTCACGCCAATCCTGGCTATCACGCCACCCGGCTATCCCGCCTTC
CGGACATCCATGTCCGTACATATTCGTTTGCACCCTGGCTATCACCATGG
CTATCACGTCACCAGGCTTCCACGCCACATCCAGAGATACCATACCCGAG
CTATCACGCTCCATCCCAAAGTAGAAGACTGTCACGCCCATCATAGTTCC
TATACTGCTGTACCGTTGGCGGCTACCGCGCCGCTGGCTCTTTTATTCCT
GAACAAAGGGACCCCGCGCGCCAAGGCACCGACGCACAAAGCTACTCAAC
ATCCAGCCACAACAGTTTATCAGCTCTTGTCTCAGGCAACTCAGGCTATC
TTGCCCCTTGATGACGATTGGGGCCCAACCTTCCTTC

Coding sequence (CDS) from alignment at Scaffold_647:71063..74499+

>EsuBft785_10a-0001 ID=EsuBft785_10a-0001|Name=EsuBft785_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=795bp|location=Sequence derived from alignment at Scaffold_647:71063..74499+ (Ectocarpus subulatus male Bft15b)
ATGGAGTCGACTATCGACTGGTCCAGCCGGATTGCCAAGGGGAAGGAGTC
CACTCCCGGCCCCATGGTACGCCACGCCGAACTCTCCAACGTCGCCTACA
CGGCCGTGAAAGTCATCAGCGAGGAGTTCAAGAAGCGCAACATCGGCACC
CCGGTTGAAGACGTCGAGTTTCTAGCCCTGTTCTTTGACCCGCGAAGCAA
GGACTTCGGCAAGGGCGTGTGTGGGGGAGAGGGGGGCCAGGAAAAAGCTC
TCGAGGCTCTTTCGACGGTGTCGATGAACTTGGTCGACACGGTCGAGCCA
GGCGGCGCCGCCGATGTGCCAGTCCCAGCTGCTGCCACCCCGCCGCCCGA
GAAGCGAGCAAGGGTGGCCACGACCGCGTACGAGAGGCGTCAGGCGCGGA
AGGTCCAGGAGGCAGCAGCTGCGCGGACGAGCGCGCGTAGAGACCAGCCG
TCTGTAACGGACCGCGTGCAGAAGGAGGTGGATGAATACACCAAGCTGCC
TGCCGCCGTCCCCGCGAAGGACTACGACGTCCTCGGTTTCTGGAGGGATG
CCGGCAGCCCGCGTCTTGACCCCCACGGCAACGTTGTTTCTGCCGCACAA
TTCCCCATCTTGTCCATGCTTGCTCGCGTGTACCTTTGCATTGACAGCAC
TAGTTGCCAATCAGAGAGGGAGTTTTCGGGGCTAGGATTCGTGTACAACA
ATCTTCGGCAAGCGATGGTGCCCGACCGGGTCGAGATGGTGATGTTCCTT
AGGTCTAACCCCCATCTTATTCCCGAGATCAATAAGTTGGNNNNN