EsuBft778_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft778_7a-0001
Unique NameEsuBft778_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_161contigScaffold_161:97894..99790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft778_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length46
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft778_7aEsuBft778_7aEctocarpus subulatus male Bft15bgeneScaffold_161 97894..99790 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_7a-0001-exonagat-exon-108584Ectocarpus subulatus male Bft15bexonScaffold_161 97894..98184 +
EsuBft778_7a-0001-exonEsuBft778_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_161 99622..99790 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_7a-0001-exonagat-five_prime_utr-13769Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_161 97894..97919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_7a-0001-cdsEsuBft778_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_161 97920..98184 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_7a-0001-exonagat-three_prime_utr-21360Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_161 99636..99790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_7a-0001EsuBft778_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_161 97920..99635 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft778_7a-0001 ID=EsuBft778_7a-0001|Name=EsuBft778_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=460bp|location=Sequence derived from alignment at Scaffold_161:97894..99790+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GATAACGGCCCCACACGCGCGACACCATGGTAGGGTCCAACATAGAGAGG
GTAGTAGTCACCAAGGGCAAATCCGGGCAGGATTCAGCAAACAGGGCGGT
TAACGGCGCTGCTGCAGGTCCAGCCGCATTCGGTTTCCCTGCTCCGCGGG
CCGCCAGGCAACACCTCAGGCCAAGGCGAGCAAGCGCGAAGCAGCAAGAT
GCCGAGAGCATGCCCTACTTGCTGGATAGTGTCAGCCAGGTTGTTGAAAG
GAGAAACCATCATGTCTCGGGCATCGAGGTTGCAGCAGCAGCCGGAAGAA
AATAATAAAAAGGCATCTTCCGCGCGTGACCGAGTAGACGGCTGGTAGAG
GAAAGGCCTTCCCGAGAGCAACGGACGCAGCTGGCGCGAAAGCAGCGCTA
GACAACGAGGAATCAGCGTGGGGAAACGGGGCACCGCCTACGGCATTTTG
GAGGACTTCA
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protein sequence of EsuBft778_7a-0001

>EsuBft778_7 ID=EsuBft778_7|Name=EsuBft778_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=92bp
MVGSNIERVVVTKGKSGQDSANRAVNGAAAGPAAFGFPAPRAARQHLRPR
RASAKQQDAESMPYLLDSVSQVVERRNHHVSGIEVAAAAGRK
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mRNA from alignment at Scaffold_161:97894..99790+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft778_7a-0001 ID=EsuBft778_7a-0001|Name=EsuBft778_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1897bp|location=Sequence derived from alignment at Scaffold_161:97894..99790+ (Ectocarpus subulatus male Bft15b)
GATAACGGCCCCACACGCGCGACACCATGGTAGGGTCCAACATAGAGAGG
GTAGTAGTCACCAAGGGCAAATCCGGGCAGGATTCAGCAAACAGGGCGGT
TAACGGCGCTGCTGCAGGTCCAGCCGCATTCGGTTTCCCTGCTCCGCGGG
CCGCCAGGCAACACCTCAGGCCAAGGCGAGCAAGCGCGAAGCAGCAAGAT
GCCGAGAGCATGCCCTACTTGCTGGATAGTGTCAGCCAGGTTGTTGAAAG
GAGAAACCATCATGTCTCGGGCATCGAGGTTGCAGCAGCAGGTGTGTGAG
AAGCTTGTTTGTGTCTCTCTCGCCATCTGTCGAGACTACATACGGACACC
GGTCGCCCCGGTGGTCTATCTAGTGGGTAGCCTCGCAGCCTGCTAAAGGC
CAGGTCATGGGTTCGAGTCCCGACAGAGTGAGTTTTTTCTCGCTTATTAT
ATCCTGGTCTCCGTTGGAAGCGACGCGCTGCAAAAGCTCGTTGTTGGTAA
ACTTGATCGACTCCATAAGTCGCGAGGGAAGGGATTGCTGCACCCTTCTT
GCGATAAAAATATCTCAGGAAGGAACCGCAGGAGGAGGGGGTCCAGCCCC
CCCCTCCTATGTGACCCCGGTTGGGTCGTCTAGCTGGTAGAAGTGGAGGA
TATGGGCCAGAGGGGCAGGCGACAGAGTTCAATGATGGGAGAAAAAAAAA
GAATACGTGTCCGCCTGGTGTGTCCGCCTGTGTGTGCGTGTGTCGCTGTT
CGTCCCCTCTGTCGTCTCGCCGCATTCGCTCGCACCCGCAATTCCACCCC
AACACTTCGTCTCGCACTGCAAGTCGAAGCATGTTTGGGGTGGTACTCAC
GATTCAAAAAGCTGATACCCACATGTGTGCGTCCCTATTCTTGTATCAGG
ACCTCCGACTCTGTAGCATACATTTCGAAGATGCTGGTGCCACCGACGGT
GCTGCTGTTACCCTCTGCGAGAAGCAGCTGTACTTATAGTCTGCGCTACA
TGTAGTTTGTACATGGGCACATACATGCCGAGAGTACCACTGCTGTGTCC
CCCAAACTACTGCTGTATCACCGAAACCTGCTGTAATCCGTCGGTCAAGT
CGGCAGCAGCAGTGGTAAATCGTTTGTTTTTTAGTGTACCATGTGCAGCA
TACACAAATGTACAGCATGTTTTTTCACTCATGAGTTATGGCGTGTTCGT
CCACAGCAGCAGCCAATCTGCCAGCGTGCAGTCCTTGTGAGTAAGACAGA
ATGTGGATTGTTTCGTACAGCAGTACAACGTATTCGTCGGAATCCGCCCC
ATCACCCCTGCGACTGTTGTCGACACCAAACATGCGTGACCACGACTCGA
GAAGAAAAGGTACTTTTCTTTTGCAGTACGTTTTCACCTACATTGACCTA
CCGCTCTCTCGCGCGCACCCGACGATTTCTGAGATGCGAATGCTTCAATG
TTTGACTGAGCGTCTCGCAACGTCGCCACTGTTTTTGTTTCACGTCATTA
AGGCGAAAATGCCGCTACAGGGGGCGATCGCNTCGAGAAGAAAAGGTACT
TTTCTTTTGCAGTACGTTTTCACCTACATTGACCTACCGCTCTCTCGCGC
GCACCCGACGATTTCTGAGATGCGAATGCTTCAATGTTTGACTGAGCGTC
TCGCAACGTCGCCACTGTTTTTGTTTCACGTCATTAAGGCGAAAATGCCG
CTACAGGGGGCGATCGCACCTCATGCAGCCGGAAGAAAATAATAAAAAGG
CATCTTCCGCGCGTGACCGAGTAGACGGCTGGTAGAGGAAAGGCCTTCCC
GAGAGCAACGGACGCAGCTGGCGCGAAAGCAGCGCTAGACAACGAGGAAT
CAGCGTGGGGAAACGGGGCACCGCCTACGGCATTTTGGAGGACTTCA
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Coding sequence (CDS) from alignment at Scaffold_161:97894..99790+

>EsuBft778_7a-0001 ID=EsuBft778_7a-0001|Name=EsuBft778_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=279bp|location=Sequence derived from alignment at Scaffold_161:97894..99790+ (Ectocarpus subulatus male Bft15b)
ATGGTAGGGTCCAACATAGAGAGGGTAGTAGTCACCAAGGGCAAATCCGG
GCAGGATTCAGCAAACAGGGCGGTTAACGGCGCTGCTGCAGGTCCAGCCG
CATTCGGTTTCCCTGCTCCGCGGGCCGCCAGGCAACACCTCAGGCCAAGG
CGAGCAAGCGCGAAGCAGCAAGATGCCGAGAGCATGCCCTACTTGCTGGA
TAGTGTCAGCCAGGTTGTTGAAAGGAGAAACCATCATGTCTCGGGCATCG
AGGTTGCAGCAGCAGCCGGAAGAAAATAA
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