EsuBft778_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft778_6a-0001
Unique NameEsuBft778_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_161contigScaffold_161:74480..75655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft778_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length73
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft778_6aEsuBft778_6aEctocarpus subulatus male Bft15bgeneScaffold_161 74480..75655 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_6a-0001-exonagat-exon-108583Ectocarpus subulatus male Bft15bexonScaffold_161 74480..75119 -
EsuBft778_6a-0001-exonEsuBft778_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_161 75564..75655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_6a-0001-cdsEsuBft778_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_161 74480..75119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_6a-0001EsuBft778_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_161 74480..75655 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft778_6a-0001 ID=EsuBft778_6a-0001|Name=EsuBft778_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=732bp|location=Sequence derived from alignment at Scaffold_161:74480..75655- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCTCGCAGGCCCCACTTCATACACTGCACCCTGGCCGTGAGCCA
CTTGTCCAAACGGCGAGATGTGTACGATGCCGTCAGCGTTGCGTTCTTCG
AGGCGGAGATTTACAACGCACACCACGGCGAGGGACCTCTGCAGACGAAC
CTCAGCGGTGACGAAGATGTCACGTTTGGACCTGCATCCGGCTCGATGAA
TTCTCCCTGCATCGGAGAAGAACGTCAGAACAGTGGCTCGCTGCCAGCGG
AGCTGGCAAGCGGGGAGCAGCGGTTCCCAGCACCGATGACGCCAACAGAT
GCTACCGCTGTGCCATCACCTCTCCCCAAACTCCCTCACGCCCCACCTAG
CTTGTCAGAAGACGGCGTCGGGGATGACGATACGGCTGCTGATGATGCTA
GAGATATACGGTGGCAACCTGTGGCGGAGACGGCCATGCTCACCCCCGAA
TCGGCTGCAGAGGCTGCAGAAGCGGGGGGTGCTTGTGCCGGCTGGTCAAG
TGCAGCCGCCGCTCCTAGACAGCAGTTCTGTTCGCAGGGAGACAATGGTG
GTGGAGGTGGTGCTGCTGGTGCTCCGTCGGCGGTGGCACGCAATCCCACG
GTGGGGCCCGAGGTTTGGGGAGGAGACATGGCCCTCGGGGGAAGTGAGAT
GGCCTTAACTGATGAGTACCTGCTGGATGCCGCGACAGTGTTTGCGAGCG
ATGAGGTACTCTTGGAAATGACGCTGGTGTGA
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protein sequence of EsuBft778_6a-0001

>EsuBft778_6 ID=EsuBft778_6|Name=EsuBft778_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=243bp
MAARRPHFIHCTLAVSHLSKRRDVYDAVSVAFFEAEIYNAHHGEGPLQTN
LSGDEDVTFGPASGSMNSPCIGEERQNSGSLPAELASGEQRFPAPMTPTD
ATAVPSPLPKLPHAPPSLSEDGVGDDDTAADDARDIRWQPVAETAMLTPE
SAAEAAEAGGACAGWSSAAAAPRQQFCSQGDNGGGGGAAGAPSAVARNPT
VGPEVWGGDMALGGSEMALTDEYLLDAATVFASDEVLLEMTLV
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mRNA from alignment at Scaffold_161:74480..75655-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft778_6a-0001 ID=EsuBft778_6a-0001|Name=EsuBft778_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1176bp|location=Sequence derived from alignment at Scaffold_161:74480..75655- (Ectocarpus subulatus male Bft15b)
ATGGCTGCTCGCAGGCCCCACTTCATACACTGCACCCTGGCCGTGAGCCA
CTTGTCCAAACGGCGAGATGTGTACGATGCCGTCAGCGTTGCGTACAACA
CTATCCGCCCCCCCTGATGTTGGCGAGCTCCACCGTATGAAGAGTGGAGG
ACGATTACCCAGATCTGCGACAACATGTTCTGCAGGTCTGAATGGCCGCG
TCATCCAGTTGTTGTCTGTTCATCATGCGCGTAGTGCTATACGTAAAGAT
CAGTTTGCTGTGACAGCCTGTGGCGAACGATCGTAGATTTCAACGCCTGT
CGTTCCTTGTTGCTTCTGATTTCGTGTGATTCTGTTTGGGGACTGTTGCG
TAGCTTTTCCTGGTGCCTGCCCTCTCCGCGATGTGCAATACGACCTACTG
TTGTCCCCCAGCACGCATGGGTTCGCTTGTGCTCCCATCAAGTCCTTCCC
CTACCCGTTTTCTTGCATTTTCTGTGTCCCCCTGTCGCGTCCGTCCATCT
TGCTCGCCCGGATCCTTTTCCCACCCTGGACGGAAGGTTCTTCGAGGCGG
AGATTTACAACGCACACCACGGCGAGGGACCTCTGCAGACGAACCTCAGC
GGTGACGAAGATGTCACGTTTGGACCTGCATCCGGCTCGATGAATTCTCC
CTGCATCGGAGAAGAACGTCAGAACAGTGGCTCGCTGCCAGCGGAGCTGG
CAAGCGGGGAGCAGCGGTTCCCAGCACCGATGACGCCAACAGATGCTACC
GCTGTGCCATCACCTCTCCCCAAACTCCCTCACGCCCCACCTAGCTTGTC
AGAAGACGGCGTCGGGGATGACGATACGGCTGCTGATGATGCTAGAGATA
TACGGTGGCAACCTGTGGCGGAGACGGCCATGCTCACCCCCGAATCGGCT
GCAGAGGCTGCAGAAGCGGGGGGTGCTTGTGCCGGCTGGTCAAGTGCAGC
CGCCGCTCCTAGACAGCAGTTCTGTTCGCAGGGAGACAATGGTGGTGGAG
GTGGTGCTGCTGGTGCTCCGTCGGCGGTGGCACGCAATCCCACGGTGGGG
CCCGAGGTTTGGGGAGGAGACATGGCCCTCGGGGGAAGTGAGATGGCCTT
AACTGATGAGTACCTGCTGGATGCCGCGACAGTGTTTGCGAGCGATGAGG
TACTCTTGGAAATGACGCTGGTGTGA
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Coding sequence (CDS) from alignment at Scaffold_161:74480..75655-

>EsuBft778_6a-0001 ID=EsuBft778_6a-0001|Name=EsuBft778_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=732bp|location=Sequence derived from alignment at Scaffold_161:74480..75655- (Ectocarpus subulatus male Bft15b)
ATGGCTGCTCGCAGGCCCCACTTCATACACTGCACCCTGGCCGTGAGCCA
CTTGTCCAAACGGCGAGATGTGTACGATGCCGTCAGCGTTGCGTTCTTCG
AGGCGGAGATTTACAACGCACACCACGGCGAGGGACCTCTGCAGACGAAC
CTCAGCGGTGACGAAGATGTCACGTTTGGACCTGCATCCGGCTCGATGAA
TTCTCCCTGCATCGGAGAAGAACGTCAGAACAGTGGCTCGCTGCCAGCGG
AGCTGGCAAGCGGGGAGCAGCGGTTCCCAGCACCGATGACGCCAACAGAT
GCTACCGCTGTGCCATCACCTCTCCCCAAACTCCCTCACGCCCCACCTAG
CTTGTCAGAAGACGGCGTCGGGGATGACGATACGGCTGCTGATGATGCTA
GAGATATACGGTGGCAACCTGTGGCGGAGACGGCCATGCTCACCCCCGAA
TCGGCTGCAGAGGCTGCAGAAGCGGGGGGTGCTTGTGCCGGCTGGTCAAG
TGCAGCCGCCGCTCCTAGACAGCAGTTCTGTTCGCAGGGAGACAATGGTG
GTGGAGGTGGTGCTGCTGGTGCTCCGTCGGCGGTGGCACGCAATCCCACG
GTGGGGCCCGAGGTTTGGGGAGGAGACATGGCCCTCGGGGGAAGTGAGAT
GGCCTTAACTGATGAGTACCTGCTGGATGCCGCGACAGTGTTTGCGAGCG
ATGAGGTACTCTTGGAAATGACGCTGGTGTGA
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