EsuBft778_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft778_5a-0001
Unique Name	EsuBft778_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_161	contig	Scaffold_161:53709..60606 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FPB8
ProteomeId	EsuBft778_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	63
Hectar predicted targeting category	other localisation
Evalue	5.66e-09
EggNOG OGs	KOG1471@1\|root,KOG1471@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
Description	macromolecule localization
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft778_5a	EsuBft778_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_161 53709..60606 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft778_5a-0001-exon	agat-exon-108582	Ectocarpus subulatus male Bft15b	exon	Scaffold_161 53709..53944 +
EsuBft778_5a-0001-exon	EsuBft778_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_161 60208..60606 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft778_5a-0001-exon	agat-five_prime_utr-13767	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_161 53709..53944 +
EsuBft778_5a-0001-exon	agat-five_prime_utr-13768	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_161 60208..60267 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft778_5a-0001-cds	EsuBft778_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_161 60268..60606 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft778_5a-0001	EsuBft778_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_161 60268..60606 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_161:53709..60606+
coding sequence from alignment at Scaffold_161:53709..60606+

spliced messenger RNA

>EsuBft778_5a-0001 ID=EsuBft778_5a-0001|Name=EsuBft778_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=635bp|location=Sequence derived from alignment at Scaffold_161:53709..60606+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTGAACTCTGCCAAACCCGTGCGGCTTCCTCCCCCGTGCTGCTGC
GGGTGGTACGAAGAGGCAGAACCATCCCAATTGAGGCCGCTCTTCCAACC
CAAGCAGAAAGAGAGAAGCAGGATGGCGGATTGGGCGCAAGATCACGAGC
AATGATGTTGTTCCCCCTGGCCGCAGCGCCAGGCAAGCAGCACCAGCGGC
AGCGCGTGATATAGTACAAGCGGTGGAGGTGCACAGTTCAAAGCGGCGTT
CGACGCTCTCCTGGGGAAAGCCGCCCTATTAGAACAGGTTCCTTACATGC
AGATGCAGCAGAAAGCCGCCATTCTGCACGACGTTAGCAGCATGCTAGCG
GAACTCTTGCGCCTGCCGATGCTGGATGGGTCGCTGAGCACGGAAAGAAA
GTTCGTAGCAACCCTCGACGAGGGCGTGAAACACGCCTTGCAGGGTAAAC
AGTACGATGCTGCGGGCATGTGGCTCCACGGGAAGCTCATGAGCTCCTCG
GAGGAGGGCCAACAAGTGGATAGAGCTCTGCTTATCAAAGAGCTCAGTGG
CGTAGCCAAGTTTATTACGGTGCCAAGGGCAAGGGCGGAGGCGCCATGCC
GTGGGGTGGGCCCCCTATGCAACCGATCGCTTTAG

protein sequence of EsuBft778_5a-0001

>EsuBft778_5 ID=EsuBft778_5|Name=EsuBft778_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=112bp
MQMQQKAAILHDVSSMLAELLRLPMLDGSLSTERKFVATLDEGVKHALQG
KQYDAAGMWLHGKLMSSSEEGQQVDRALLIKELSGVAKFITVPRARAEAP
CRGVGPLCNRSL

mRNA from alignment at Scaffold_161:53709..60606+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft778_5a-0001 ID=EsuBft778_5a-0001|Name=EsuBft778_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6898bp|location=Sequence derived from alignment at Scaffold_161:53709..60606+ (Ectocarpus subulatus male Bft15b)
ATGGAGTGAACTCTGCCAAACCCGTGCGGCTTCCTCCCCCGTGCTGCTGC
GGGTGGTACGAAGAGGCAGAACCATCCCAATTGAGGCCGCTCTTCCAACC
CAAGCAGAAAGAGAGAAGCAGGATGGCGGATTGGGCGCAAGATCACGAGC
AATGATGTTGTTCCCCCTGGCCGCAGCGCCAGGCAAGCAGCACCAGCGGC
AGCGCGTGATATAGTACAAGCGGTGGAGGTGCACAGGTAGGAGCAGCACC
GAATCGCAGTTACATGTCTCAGCTAGATAGTTGCAGCTGCAACGGCAGTG
TTGGATTTTGCGTTGCTCTGGAATACATGTACAGCAGTAATGACGTAATG
ACGGCAGTGGTCACCAATCAAACACATTTTCACATCTCTTTCCACTTTCC
ACCGACGAAAAATCGATACCCTGAGTTCTGCTGAGGCTCAGAACCTCCGT
ATGAGTCAATGTTGGTGGATTTTGTAAACCAGTTACACCCCGGCGCTAAG
GTATCCTTCTAATGTTCTATTGCTGTTGCCAAACACTTTGAAGTATTCTG
CTGTAGATCTTGTGCGAAATACGGTCTCCCCGCCGGGCTATTGCTGGAAA
CTGTGAATCATTCTAAAATTGTAAAAAAAAAAAAAGTTCGATCTACTTGT
ACGGCACGTACCCACATGTGCTTTCTTTCTGGTGAAAGAATTAGTCCGAT
TGACGTAGACCGTATAAAGTACCATTTCAGGTGCGTTCGTCCGATTTGTT
CCGCCGCCAGCACACACACCTCGACATATATTAAGGCGAACAAAATGCTT
GGAGTTTGACCACCGAGATCCAAAATATATCTTGTGGGGTTCATGTCGTT
TTGTCTATAATAGGAGGTACATCTCATCAACTTGATTGTGCTCTACTGTT
TGTGGTCTAGTCTACTGTTTTACTTTGTTGTGGCGATCCCGACCGCAGAC
GGTCGTTTAGTTTGTCTCGTCCCTCTCGTTCCCGACGACCCACACCACGC
ACACACGTTCATTTCTTCCCTAGCCCACAATCACAACAATCTCTACTACC
TGTGTGTGTGCTGTGGGGCGTGGCCAGTCATCGTCACCACACCAGCGGCC
CAGCAGATTAACCAATCGATCGCCCGCTTCCCCCCCGACAGCCAGTGTGA
GTGGTACATATGTATCCCACGGCCGCTGTCTGTTTGTGCCTACAGAGTCG
CGAAATGTGATGCCTCCGTACTGCAATACGATGGCAGGCAGTCAGTCCTC
TTTCTACTACGCGGTGCACCACGTTCTCACCAAATGCCGTACTGTTCGTG
AGATATGTAGTCTACTACAACAGTTGTGGTTGACTGGATACCTGAAACGT
GTTTGTTTGCATGTCGGGAAGGTAGCGCTGCAAGGCACGTCGCAGGACGC
TCGCCGAGCTGGCTGCACGCGCGCCCCAATAATGTTTTGCTGGTTTAATG
TGGAACCCCCTCCCAAACAGCAGTGCCTTGCCCTCTCAACCCGATCGGGG
CGTTTACCTGACGGTGACTGGGTTTTGCGCCAAGCAATCTCCCATCCGCC
AGCAATTCCTTTCCGTTCTATGTACTCTACCTTGCTCTTGTGACGCCAAC
AGGTATGTGTGGTCAACTCCGCACACAGCCGCACACAGCAAACAAGATGT
TTGCGCGGCCTAAACATCATATCATCGCCGTGTTGGCTCTCCTGTCCATG
GGCCACGTTTCCGGCCAGGGTGTCAGCACGCCTTACGTGTCGTGGCACCT
GTGTTATCACTCGACATGTGATCAAGCGCTTGTCTTTTTTCGCATCCATG
GGGAACCCAACATGAGTGATAGAAAACTGTGGCGTTTTTTGTTTTTTGTT
CGCTTCAAATCAGCGCTCACAGCACTGGTGCCGTTTAATCCCACCCGTGG
TCACACAGAAGGGCCCCTCTCTACCCTCCCCTCCTGCGGTACGTTGTCTT
CGAGTTTCTACGCGAGGATAGTTCAGGACTCTCTTCCTTCTGTGAACACA
CGAACTACAAGTAGCGCTATCCACTAGGCCAGGAGCTGAAGCGAGAGAAA
AACTCACCTTGCAAGAAAAGCTCGCTTACGCCGGGGTTCGAACCCCTGAC
CTGATGTCCAGCTTTCAAGGATACCACCTAGACCACCGGGGCGCCCGTGG
CCCAACAGATATTCGAATTGCTTCAGAACATGTAGTTCCATGAAGTCTCC
GAGGGCACTTGAAGGAATGCATGGGCGCTTCTCATGCAGAGCACGCAACG
CTCCACGTATGCGTCTGCTGGATACATTTTGGCGACATTCTTGCTACCGT
TCGGCTGGCTTTTTGCCACGATGTCAGACCCTAAAACTTCCGTTCCTATC
GCTGCCCGCTTGGTGTGTGACGTCGTCCTGTACAGTGCGTTTCGTCGAAC
CCGGTCATGACTCTCGATTTTACGGGACCTATCGCGACGAGTGGTACTGC
CACGGGCGCTGACTTCACCAGGATCTCGGGGGACGTATCCGATGATCAAA
CGAGCCTGACGTTCGCCATCGGCGAGCCTGATCCAGATCCAATATACTGG
TTGAGCGAGACGGTTGATCAATATCACTGGTATTGTGTTGTTTATTTTGA
CAACTGCGACACCTCCTACACGTGGAGCGACAACTTCGTCCAGCTTCCTA
CGTCGACGACGAACTAAACACCATCGATCTCTCCGGCTTTGAAGATATAT
CTTTCATCGATGAGCCGGACACCGGGATATGGCGTGATTACGGTTGAAGA
GATTGTGCCAACTCAAGCATCACAATTTGTAAGGAATGGCTCGTGCCTCA
TGCATGCGTTACACTGCAACTTCTGTACAGTGTTCTGCTTGAGTGGTACA
ATAATTCACCGTCTGTGCACGTATTCTGAAGGCGGAAAGTCTGAATGCAA
GATGGAAAACTGTGACGGTCTACCGCTTTGCCACCTGAACTGGACATGCC
CGTGTCTTGCCCTTCTTGGGCTACCCTGGCAGCCACTCCTAGCCCGGCCA
CGCCATCGCCGCCCACCCCAGCTCCTGTCACCGACTCCACCCCTGCCCCC
ACTCCCGCCCCGACCATGCGTGGTGAGACATGATGGATGTGTTGGTATAC
AATAGACTTGGTAGGCCGCAATGTCGGCCGATACTCAGACTGTCGTGTTC
ACCTGATGTCAAACAACGATTCGGACGAAATTGGTTTTCCCAACGGAGCT
CCTGCCGATGCTGTTCCTCCACAGTAACGACAAATTGCACCCTGTCCAGT
TGGAACCGCCAATAGATAGAGTAGACAACCAATACAAGTACAAGCTAAAA
GACGCTAAGTTTGTCTATCCCATTTACTCTTGGCGCCATCTCCACCTCCA
CATTTTTTCTAATACCGATGTGCCAGCCGGGGTCAAACATGAGGAATGCC
GTACTGTATTATGAGGAACGGAGATGGGAAAAGATGGAATCTTTCCCAGC
GCTGTCACGCAATAAAGAGGCAATATTTGAGACAGTCAGATGCGCCATCT
CACTCTTTAATTGCCAACCCTGTTTCCACAGGGAATCAGCGATAAGAGAG
TGCGCTCTTGAGACGGTTCAGTCGTCAGCCAGCACGCCCGCGGTCACCGA
CCCCGGGTTTTGCAGCTTAATAGACTTGGTAGAGGCCCCCATCCCAGCCG
TATCCCAGGATCGTCTGGACCGGGCGACAACCTCACAACAGTCTAGCACT
ATAGATTCTCTGTTTTTCTCTCCTCCCCATCTACACGCCGCACCATCCTT
CACCGATGAGCGCCACCTTAGACATCGACATGGCTACGGTCGCTCCTCCC
GTCAGCATTGAGGCCATCGGGGACGTCGTCGCTGTAGCCCAGGGCGGCGT
CCATGTATGGCAGCCGCACAAGCTCGCGATCCGCGCGGGCGGCGCGCTGC
GCCCTGCCACGAGCATCCCCGTGGACGAGCTGCACAGTCCGTGCACCACC
CTCGCCGCCGCGGGTGGTGTCTGGGAATGTGGCCAGCGGCACAGGCGGCA
AGCGCAAGATCGACGACCTCGTCAGCGTGCTAGACGACATGTCGGAGCGT
GGTAGCCTCGCCGAAGCTCTGGGCCAGGCGGGCGAGGCCTCCAGCGAGCC
GACGTCTAAACGTGCGCTCACTTTTGTGTCCACCCCTAGCAAGGTGAGTC
ATGTGGTCCTTTCTCTTATTTGGGCGTTTCCACAATGTCCGGGCGATCCG
TTGCAGTAGGGTTCCGCAGTCTGCTCCCACCTTTCTTCCTGCGACCCTAC
CGTGCGCGGGTTCTCGACGCTCGTTGCTCTCATGCCGGCGCTACTTTCTC
CTGCCAACACCGTTGTAGCCTGTTTTCCCTCGCCATCCTTGTGTCTCGAT
TGTCCAAATTTTGAGGGGGGTCAAGTGTTGCTTGCACACGACTGCCTTGC
CGTGAGACTGTGCGCTGCTCATGTGTTACAACCCACATCCTCTTCATGGC
GTAGTTTTTTCCTACGTCATCGACCGCTTGCGTAGATTGTCGGTGTAATG
GATCGCCCGGGTGCAGCATCTTTTTATGGTAGCGTCGTAGTGTTTGTTGT
GCTTACACGTCGTTGTTCTGTTGCTGTGGCGTGTGAGTCCTTTGTGTATG
CAATACGAGCGGCGCAACCTTCGCTGTGTTTCCTCTCTCGCCTTGCTCGT
GGTATTCTGGGTCACCGCCCTCAAGTTTGCAGCGGTTGGACCCCATAACA
TATCATCTTTCCTCTCGATGGATGTGTAGTAACCCTCTCGGTGATTTGTG
TAGTAACCCGCGCGACGCGATCCGATTCCTCGCTCTATGCTTCGCCAGCG
TCTCCGTGTACTGGTTATTGCTTTACAATTTGCTGGATGCCATGCCGCAC
ACACCTTCTCTTTCGACCACGCGATATTATTGTAGGCCACATTGTTCTTC
CGTGGTTGCGTACCGTTCCGCGTTCCACGCTCTTTCTACCACGCTATTTC
TAGAACGAAAATTGTTCTCCCATGGTTGTTTGCGTACCGCGGCGCCGCGT
TAATCTAAGACGCAGATTGTTTTTCCATGGTTTTCTTTGCGTACCGCTCC
GCGCACCACGTTCATCATTATTTCTTTCGAGATTCCACAATTTTCGTTTT
TTTTTGCGTACCGTGCCGCGTACCACGATCATCACTATTTGTTTCGACCA
CGTGACTTCATAAGGTTTCGTCCATGGGGCTTTGCGTATTGTTCGCGGAC
CGCGCTCGCTTTTGCTTTCGTCCTTGGCTGGCCCACCGGTTATTGATTTG
GAATTTGCTCGGTACCTTACCACCCATACCCTTTCCGTTCCACGCACAAG
TTGGCACCTTCTCTTTTTTTTCTAGCCATGCACGGGAGTTTTCCAGCCCG
TATCTTCGCGGCGGATGGTTTCCATCTTGAGCCAAGCCCTTTTTTTCGGT
GGCCTTCCGTAGGTTGGTCCGCACTAGTCTGTGCCCTGTTCCCGAATATC
CAGGCTACTATTTCCGTCGGGCTCCTTTCACGGTACTGCCTCATCCCGAG
ATGTTGTGCGAGAAGTGATGCTGAGTTCTCCCCCTCAGAGGCGCCTTTCG
TTTCCTGTGGCGTGTTCATTTGTAGGCTCGGTTACCTATTTGCCCTCTCT
CTTTCGTTTGCCAATAATTCATGGTCGGTGCGTGTTCCGCTCTGTTGCCT
CGGCTCCGGCGAAACGCTTACGCGAGTAATAGTATATGTTCATCCTGATT
CCCGCTCCATGGTTTTTCTCGGGGGCTCGTGCTTGGATTTCTGTTAGGCA
CGGTCCACTGCTCAACCGAGAGGGTTCCCGCCCGTTCCAAGGGAAGAGTG
TAGTATGTTCGTTTCGATTCCCGTTGTGTGGTTCCAAGTGCTCGTGCTTG
CATCTCTGATTGGCATAGCCCGCTACTCACCCTACGCTGTTCATGCCCGT
TCTCGAGGGATCACTCCGTGTCGCTTTCAGCGTGTTCCGACACCACATAC
GCTCATACCGGTGTTCCAAATCAGTTCACGTTCTGTGCGGGCCATTTACG
CTCAAACCCCGCTCCGACCCAGCTCATGGTCAAAAGTTCCGCTCTTTATT
AGGTCGCGACTCATCCGGTCGTGGGGCCTGTGTTCTGGCCTGTACGTTCT
GCATTTTTCGGTTACGTGGGCTCTGGTTCTGTTTCTCCTATTGCTTCTTG
TCGCCGCCCGCTCAGCGCTTCCGAGGTTCCTGCGTTGGTTCGCACGCGCC
GGTGCTCCGGCCGTTCGTTCGACTAGTGTTCATGTGTTCAAGTTACCGCT
CCCTCAGCGTTCCCAATGTTAATGCGCCTGGTTCGCGCACGCCGATGCTC
CGGCCGCTCGTTCGACTAGTGTTCATGTGTTCACGCTACCGCTCGCTCAG
CGTTCCTAATGTTCATGTACCTGGTTCGCGCGCGCCCATGCTCCGGCCGT
TCGTTAGGCGAGTGCTCATGTCTTCGTTCATTCTCTCCTCTGCATGCGTC
GCGGCCTTCGTGTTCCCCCCCCCCACTTTCCGTCCTTTCATGCGGCCAGT
TCAAAGCGGCGTTCGACGCTCTCCTGGGGAAAGCCGCCCTATTAGAACAG
GTTCCTTACATGCAGATGCAGCAGAAAGCCGCCATTCTGCACGACGTTAG
CAGCATGCTAGCGGAACTCTTGCGCCTGCCGATGCTGGATGGGTCGCTGA
GCACGGAAAGAAAGTTCGTAGCAACCCTCGACGAGGGCGTGAAACACGCC
TTGCAGGGTAAACAGTACGATGCTGCGGGCATGTGGCTCCACGGGAAGCT
CATGAGCTCCTCGGAGGAGGGCCAACAAGTGGATAGAGCTCTGCTTATCA
AAGAGCTCAGTGGCGTAGCCAAGTTTATTACGGTGCCAAGGGCAAGGGCG
GAGGCGCCATGCCGTGGGGTGGGCCCCCTATGCAACCGATCGCTTTAG

Coding sequence (CDS) from alignment at Scaffold_161:53709..60606+

>EsuBft778_5a-0001 ID=EsuBft778_5a-0001|Name=EsuBft778_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=339bp|location=Sequence derived from alignment at Scaffold_161:53709..60606+ (Ectocarpus subulatus male Bft15b)
ATGCAGATGCAGCAGAAAGCCGCCATTCTGCACGACGTTAGCAGCATGCT
AGCGGAACTCTTGCGCCTGCCGATGCTGGATGGGTCGCTGAGCACGGAAA
GAAAGTTCGTAGCAACCCTCGACGAGGGCGTGAAACACGCCTTGCAGGGT
AAACAGTACGATGCTGCGGGCATGTGGCTCCACGGGAAGCTCATGAGCTC
CTCGGAGGAGGGCCAACAAGTGGATAGAGCTCTGCTTATCAAAGAGCTCA
GTGGCGTAGCCAAGTTTATTACGGTGCCAAGGGCAAGGGCGGAGGCGCCA
TGCCGTGGGGTGGGCCCCCTATGCAACCGATCGCTTTAG