EsuBft778_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft778_2a-0001
Unique NameEsuBft778_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_161contigScaffold_161:1894..4416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft778_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length64
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft778_2aEsuBft778_2aEctocarpus subulatus male Bft15bgeneScaffold_161 1894..4416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_2a-0001EsuBft778_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_161 1914..3778 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_2a-0001-exonagat-exon-108551Ectocarpus subulatus male Bft15bexonScaffold_161 1894..1936 +
EsuBft778_2a-0001-exonagat-exon-108552Ectocarpus subulatus male Bft15bexonScaffold_161 2164..2178 +
EsuBft778_2a-0001-exonagat-exon-108553Ectocarpus subulatus male Bft15bexonScaffold_161 3730..3953 +
EsuBft778_2a-0001-exonEsuBft778_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_161 4052..4416 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_2a-0001-exonagat-five_prime_utr-13764Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_161 1894..1913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_2a-0001-cdsEsuBft778_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_161 1914..1936 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft778_2a-0001-exonagat-three_prime_utr-21357Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_161 3779..3953 +
EsuBft778_2a-0001-exonagat-three_prime_utr-21358Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_161 4052..4416 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft778_2a-0001 ID=EsuBft778_2a-0001|Name=EsuBft778_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=647bp|location=Sequence derived from alignment at Scaffold_161:1894..4416+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGACTCCAACGGCATCTTCATGCTACGCGTGCTTTCGTCACACTGGTCC
TTATCGTTGACGGCCGGAATGCCTTTGCTCGTGGATCTTGCGGGTACCTT
TCCATGATAAGCTTTTTGAAAGTGACCGTGATCCACCTTGTCGAGACCCG
CAGCTTCCTCTTGCGTCGTGCCAGCAACATCTTGTACAGCTCCTTCTCCG
CGTCAGGGAACCACAGCCGCCGTCGAGTGCATGTCGCCATCAGACTACTC
CGCACCTTGTCAGCTGCCTGCTGCACGAGAGAAGTCTTCATCCTTCTGCC
ATTTGCTGATATTGCTGGCCGAGATCCCTGACTTATGTTCCAAGTAGAAG
AGAGGGATCATATCAAAGTGCGCACGAAGGTCCGCTGACCGCGACTCTAG
ATCTCGCAGCTCCTGAATAACACCGACCTTCTCGCGCGAGGTGTACCGTC
TCCTCGAGGCTGCTCCACACGTTTTCTTTGGTGGCGACTCCGTTTGTGAA
AAGCCGTCGTTCACGAGGTTGTTGTTCCGCTCGACTCCAGGGCGTAAAGG
CTGCAGCACAAACGTCACGGACCCTGGCGGACATGTCGCGCCGCATCCGC
GACTCTCTCCATGGTGAAACGCAACGTGCCAGCAACGTCCTGTCGGT
back to top

protein sequence of EsuBft778_2a-0001

>EsuBft778_2 ID=EsuBft778_2|Name=EsuBft778_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=28bp
MLRVLSSHWSLSLTAGMPLLVDLAGTFP
back to top

mRNA from alignment at Scaffold_161:1894..4416+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft778_2a-0001 ID=EsuBft778_2a-0001|Name=EsuBft778_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2523bp|location=Sequence derived from alignment at Scaffold_161:1894..4416+ (Ectocarpus subulatus male Bft15b)
ACGACTCCAACGGCATCTTCATGCTACGCGTGCTTTCGTCACAGTGCAGG
ATGACGCGGTAGTCGTACTCCTGCCGTGCAGCGGGGTGAGATCTGCGACT
AGTTACCCCTCCGAACCAACCCAACCCGAGTTTCACGAGAACCCACGCTT
CACTATCGACTGATCGAGGGTCGGTGGTGAAGACGCCTGGAGTCGAAACC
CGTCCGGGATGTCCATCTTCAGCGTTTCTTCCTCAGGCGACAAGTCGTCA
TCGTCGTCGAGCTGGGTCAGCTGGTCCTTATCGTTGTCATCGTCTCCTTA
CAAGGCACAGCGGAGGCATCGTCTATTGTTGTAGCGATTCCCGAAGCGGG
GACAATATTCCAACACTCATTAATGTGTCAACAAGAGGAGCTTTCTTCCG
CAAGGGTTATTCTACTGTGCTCCGAATGAACGCGAAATACAGTATCACTT
ACCATCGCTCTCATCATCGCTGGAAGAGGCGTCCTCCGACAGCTGGTCCA
CGTCAACCTTGCCGATGTCCCCATCCTCCTTGCCCTCCTCATCAGCGCTG
GCGCCACCCTCCACATCCATGAAGGAATATGTGGAGAGGCCCTCGAGGTT
GATTTTGTCGTCCCCAGAGTCATCCGCCGTCATTCCACATCCGGTTTTCT
CGAAGAGACGGAACCGATATTGCTCATCTTTGTCGATCTCCTCGGTCGCC
TGTGCCACCCAACTGGAAAGCAACACGCGACGTTCGGAACACGTCAGTGC
TTTGGCCTCCCACTTTTGCAGGTTGTCTCCTCTCTCCAGCCACTCGTTCA
GCTGCACCCCCACAGCCACCTTCAGCCGCCGTCCATAGCCAGCGTCGATC
GGCTGGACCTCGTCCGTACAGCCTGCCGGCAGGTGCCAAAGAAGCGTGTT
GCACTCCTTATGGAGATACTTGCGGAATTCCTCGGTCGTCTGCCCGTACA
GGTTGTCGGCGAGAAGAAGCGACTGCTCCTCGGGCACCGTCTACCATTCG
GCTCGGGCGAAAAGAGCGCTCCAGCCATTGCATGCANTCTCTCCAGCCAC
TCGTTCAGCTGCACCCCCACAGCCACCTTCAGCCGCCGTCCATAGCCAGC
GTCGATCGGCTGGACCTCGTCCGTACAGCCTGCCGGCAGGTGCCAAAGAA
GCGTGTTGCACTCCTTGTGGAGATACTTGCGGAATTCCTCAGTCGTCTGC
CCGTGCAGGTTGTCGGCGAGAAGAAGCGACTGCTCCTCGGGCACCTTCCC
GTCTACCATTCGGCTCGGGCGAAAAGAGCGCTCCAGCCATTGCATGCAGA
AGTCGCTGTCGGCCCAGGCCTTGGGCTGGAAGAAGACATCTACGCGCTTG
TCGTATGCTGCCTTCTCCACCTTGGTGATGCCGGTTCCTTTGCCGCGGAA
GATGATCCCGCCTGCTCCTATCGTCGGTTGCACCGTGCACTGCCGCTTCT
CCAAGCCGGGGAATGGCTGGCCAACATGCATACGCTTCGCCCCTATTTTG
TCCCAGGCGTCTTCCTGTCCGGTCACGAACCCCAACGGTATCTGGTCGGT
GTTGTCCCTCAGCTCCTTCACGAAGCGCCCCCACTTGCCGTAGGGTCCTT
CGTAGGGGATCAGCGCCCCTGGTTGCTCGACGGATCTTCCGTCCGAGACA
GGTGCTTGTGGCTCCCACGGGATCACCTTCCCTCCATGTACACGAGGCTG
TTGCAGGAGCTTTCGGAACACCCTCTGCCATTTCCGGATCTTCGGCAGTC
TCTCCTCCACAGACTTGTTCTTGGAGTTAGACCGCCGCCGCTTAGACAGC
GAGTGCCTCGTCGCCCACTTTTGCGCGAACCGGAAGGACGGCCGGAATGC
CTTTGCTCGTGGATCTTGCGGGTACCTTTCCATGATAAGCTTTTTGAAAG
TGACCGTGATCCACCTTGTCGAGACCCGCAGCTTCCTCTTGCGTCGTGCC
AGCAACATCTTGTACAGCTCCTTCTCCGCGTCAGGGAACCACAGCCGCCG
TCGAGTGCATGTCGCCATCAGACTACTCCGCACCTTGTCAGCTGCCTGCT
GCACGAGAGAGTCTTCATCCTTCTNTGCGTCAGGGAAGCACAGCCGCCGT
CGAGTGCATGTCGCCATCAGACTACTCCGCACCTTGTCAGCTGCCTGCTG
CACGAGAGAGTCTTCATCCTTCTGCCATTTGCTGATATTGCTGGCCGAGA
TCCCTGACTTATGTTCCAAGTAGAAGAGAGGGATCATATCAAAGTGCGCA
CGAAGGTCCGCTGACCGCGACTCTAGATCTCGCAGCTCCTGAATAACACC
GACCTTCTCGCGCGAGGTGTACCGTCTCCTCGAGGCTGCTCCACACGTTT
TCTTTGGTGGCGACTCCGTTTGTGAAAAGCCGTCGTTCACGAGGTTGTTG
TTCCGCTCGACTCCAGGGCGTAAAGGCTGCAGCACAAACGTCACGGACCC
TGGCGGACATGTCGCGCCGCATCCGCGACTCTCTCCATGGTGAAACGCAA
CGTGCCAGCAACGTCCTGTCGGT
back to top

Coding sequence (CDS) from alignment at Scaffold_161:1894..4416+

>EsuBft778_2a-0001 ID=EsuBft778_2a-0001|Name=EsuBft778_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=87bp|location=Sequence derived from alignment at Scaffold_161:1894..4416+ (Ectocarpus subulatus male Bft15b)
ATGCTACGCGTGCTTTCGTCACACTGGTCCTTATCGTTGACGGCCGGAAT
GCCTTTGCTCGTGGATCTTGCGGGTACCTTTCCATGA
back to top