EsuBft7766_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft7766_2a-0001
Unique NameEsuBft7766_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:343660..353273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G5K9
ProteomeIdEsuBft7766_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length144
Hectar predicted targeting categoryother localisation
Evalue1.5e-79
EggNOG OGs2B9HJ@1|root,2S0TY@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionHelicase associated domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft7766_2aEsuBft7766_2aEctocarpus subulatus male Bft15bgeneScaffold_372 343660..353273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft7766_2a-0001EsuBft7766_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 344380..353273 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft7766_2a-0001-exonagat-exon-5461Ectocarpus subulatus male Bft15bexonScaffold_372 343660..344936 -
EsuBft7766_2a-0001-exonagat-exon-5462Ectocarpus subulatus male Bft15bexonScaffold_372 345043..345065 -
EsuBft7766_2a-0001-exonEsuBft7766_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 353059..353180 -
EsuBft7766_2a-0001-exonagat-exon-5460Ectocarpus subulatus male Bft15bexonScaffold_372 353253..353273 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft7766_2a-0001-exonagat-three_prime_utr-21334Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 343660..344379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft7766_2a-0001-cdsEsuBft7766_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 344380..344936 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft7766_2a-0001 ID=EsuBft7766_2a-0001|Name=EsuBft7766_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1443bp|location=Sequence derived from alignment at Scaffold_372:343660..353273- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACCACTCGGCGTCATGGTGTACGACGCCCTGCTGCAGTACAAGGC
TGAGCACGGCAATCTTCACGTACCGGTGGCCTTTCGCGTGCCGTCGAGCC
CGCCGTGGCATCAAGACCTGTGGGGGCTGGCACTGGGGCAAAGGTGTAGC
GCCTTTTGTGTAGCGGGTTCAATGCTGTACGGCCTCCGCAGGAACCCCGA
TCGGCTGAACCGGCACCCGGAGATACGGGCGGAGATCACCGCACTAGGGT
TCAGCTGGAAGGTACCCAAGAGGGGCCGTCGGAAAAGTATCGACACCACT
GCTGCCGCCGCCGCCGCTACATATGCCGGGGTCGATGGCACGGCGCCGAG
AAGTAGAGGCCGCGGCAGGAACGAAGCGCTCGGTGGGGAGCCGGGAGGCG
TAGCGGCGGCAGCAGCAGCGGTCCTGCGACCATCGCCACCGCCGTCGGAT
GCCGCTGTTGTTGTGTTGGCGGCCGAAGGGGTCGGGCAGGACGTCGAAGG
CCCTTCGCGGTTAGGCGATGGAGCTGGTGGTCGTGGGTTTGATGTTGGGG
GTGAGGGTGGTACTGTTGTCAGTGATGGTAGGTCTGAAGGTGTGCGTGCC
CGAAGTCGGGCACATGGTGAAGATAGCACCACAGCGAAGACGAATAAAGG
TAGCGTAGTAGCGAACGGTAGTTCAAGTTGTAGGAATAGAGCGGGTCGAC
TCCTGTCCCCCGCAGGCTGTTAGAAGAAGGTGGGGAGATGTTGGGAGGGG
GGGGCGGCGTGCGGGCTGTTGGGCCGCCGGGCGCTGGAGCTTAGACTAGC
GCACCTCGCTAGAAGCGCCATGTTCGCAAAAGGTTTCGTGGCACGCAATT
CGCTGATTGGTCAATGCACCTGCAGTGGAATTTTCAAATTGGTAAAAGAA
CAGGGACGGCCCAAGATCGTTGGTCGACGGGTGGGGTAATCCACGGCCAA
ACCGAGGGGTGCTGAAGGTTTGCCGTTTACTTTCGAAGCTAGTGGTTGCT
TGTTCGAACCCGGTGCGCTGTACGTTTCAGGAGGCGGAAATGTTTACCGT
TTCGTTTCGAAACTAGTGGTTGCTGGTTCGAACCCGGTGCGCTGTAAGTT
TCTTTGCGCGGCCTTAAGCTAGGATATTTGGCCCCTAACCGCAACCCAAC
CGACCCGACCCAAACCTATGGCAGTGGAAAGTGCTAGGTCACTACACGAA
GCAAGCCTAGGCCGCGGCAAGCCGCGGGGCTGGCGCTAGGTTGCTGCACC
GTTTGCGTTCTAGGTTGCTGTTGCTGTCCCGTTTAGGCTAACTAAGCCGC
GGCGCAGGAGGGGGTAAGGGCTAGGTTGCTGTGCACCGTCAGGGCTAGGT
TGTTGTTCGTCAGGGCTAGGTTGCTGTACGGTGTCAGGGCTGCACCTACC
CAAGGAGTGTTTCAAGAAATGGTGTCCCGACATGGAGATCACT
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protein sequence of EsuBft7766_2a-0001

>EsuBft7766_2 ID=EsuBft7766_2|Name=EsuBft7766_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=240bp
MVPLGVMVYDALLQYKAEHGNLHVPVAFRVPSSPPWHQDLWGLALGQRCS
AFCVAGSMLYGLRRNPDRLNRHPEIRAEITALGFSWKVPKRGRRKSIDTT
AAAAAATYAGVDGTAPRSRGRGRNEALGGEPGGVAAAAAAVLRPSPPPSD
AAVVVLAAEGVGQDVEGPSRLGDGAGGRGFDVGGEGGTVVSDGRSEGVRA
RSRAHGEDSTTAKTNKGSVVANGSSSCRNRAGRLLSPAGC
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mRNA from alignment at Scaffold_372:343660..353273-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft7766_2a-0001 ID=EsuBft7766_2a-0001|Name=EsuBft7766_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=9614bp|location=Sequence derived from alignment at Scaffold_372:343660..353273- (Ectocarpus subulatus male Bft15b)
ATGGTACCACTCGGCGTCATGGTTTGTTTTCGGCTCTAATGTTCCCACAT
CACCGGGGTTCTGGCATCTCGCGTCACGTACGACGCTTCACAGGTGTACG
ACGCCCTGCTGCAGTACAAGGCTGAGCACGGCAATCTTCACGTACCGGTG
GCCTTTCGCGTGCCGTCGAGCCCGCCGTGGCATCAAGACCTGTGGGGGCT
GGCACTGGGGCAAAGGTGAGAGAGACAGACAGACGGACGGACAGAGAGAG
AGCAGCTTATGGGATTTTTCGAGTGGTCTGGTGATGCTGCGCGTCATCGT
GTGGCGTATAGTTTTTCGCTCCTTGGGTTGTTCGCTTTTGGTTTGGGTCT
GGCGTTTGATGTGATGATGCAGTTCTTAATCGTTGGGGATCCGCGACAGG
CTTGTTGGTGCGCTGTATTTGGTGCCGTTGGTCAATTGTGTCACGCAGTT
TGTATACTGTGCGCGTGTTTGATGTTTGCTTTGCCTTGGAGGTTGATTGT
TGGTTCTAGTTGTGATGTTGTAGGGCTCCCTGCTGACCTCATTCAAACGC
GTTGTTGGCAGCAAGGGTATGTCAATGGCTTCGACGATGTACCAGGTGAT
GGGCATCATTGTACGCTTTCGTGTTGCATGGGTCCGCGTTGGCCTGCCTG
TTCGTGTCATCGCTTCCTTGACCGGTTAGCCCTCACTGGCTACTACGCAA
GCGCTACGCCTTGCAACTATCAACCCCCCCCCCGCACACACATCGCACCA
CGTTGTGTTAACCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNTTATGTCGTGTGTTGTACTATTCTGCCTTCACAGGAACACGT
CGCAGTGCCATTTTTGTTCGTTTTGCGGTGCATGACCTCGGCAGCCATAT
CAAAATGCTCGCCCTTACCAAGGAGACCCTGCAAGAGAGTATCATAGGTG
ATCATTGTTCTGCCGTCGGAACAACCAAGGTCCTGCTCTGCGAAGTACCC
ACTCGCAGGTGTAGCGCCTTTTGTGTAGCGGGTAAGGAAGACCGTGTGAT
GGGTTGAAATTGCAAGAGATGGGACGATACGAAGCCCCGCTCCCTTTTTC
GTACCCCTGACCATTGCCCTCCACTTGCTGCCCCCAGGTTCAATGCTGTA
CGGCCTCCGCAGGAACCCCGATCGGCTGAACCGGCACCCGGAGATACGGG
CGGAGATCACCGCACTAGGGTTCAGCTGGAAGGTACCCAAGAGGGGCCGT
CGGAAAAGTATCGACACCACTGCTGCCGCCGCCGCCGCTACATATGCCGG
GGTCGATGGCACGGCGCCGAGAAGTAGAGGCCGCGGCAGGAACGAAGCGC
TCGGTGGGGAGCCGGGAGGCGTAGCGGCGGCAGCAGCAGCGGTCCTGCGA
CCATCGCCACCGCCGTCGGATGCCGCTGTTGTTGTGTTGGCGGCCGAAGG
GGTCGGGCAGGACGTCGAAGGCCCTTCGCGGTTAGGCGATGGAGCTGGTG
GTCGTGGGTTTGATGTTGGGGGTGAGGGTGGTACTGTTGTCAGTGATGGT
AGGTCTGAAGGTGTGCGTGCCCGAAGTCGGGCACATGGTGAAGATAGCAC
CACAGCGAAGACGAATAAAGGTAGCGTAGTAGCGAACGGTAGTTCAAGTT
GTAGGAATAGAGCGGGTCGACTCCTGTCCCCCGCAGGCTGTTAGAAGAAG
GTGGGGAGATGTTGGGAGGGGGGGGCGGCGTGCGGGCTGTTGGGCCGCCG
GGCGCTGGAGCTTAGACTAGCGCACCTCGCTAGAAGCGCCATGTTCGCAA
AAGGTTTCGTGGCACGCAATTCGCTGATTGGTCAATGCACCTGCAGTGGA
ATTTTCAAATTGGTAAAAGAACAGGGACGGCCCAAGATCGTTGGTCGACG
GGTGGGGTAATCCACGGCCAAACCGAGGGGTGCTGAAGGTTTGCCGTTTA
CTTTCGAAGCTAGTGGTTGCTTGTTCGAACCCGGTGCGCTGTACGTTTCA
GGAGGCGGAAATGTTTACCGTTTCGTTTCGAAACTAGTGGTTGCTGGTTC
GAACCCGGTGCGCTGTAAGTTTCTTTGCGCGGCCTTAAGCTAGGATATTT
GGCCCCTAACCGCAACCCAACCGACCCGACCCAAACCTATGGCAGTGGAA
AGTGCTAGGTCACTACACGAAGCAAGCCTAGGCCGCGGCAAGCCGCGGGG
CTGGCGCTAGGTTGCTGCACCGTTTGCGTTCTAGGTTGCTGTTGCTGTCC
CGTTTAGGCTAACTAAGCCGCGGCGCAGGAGGGGGTAAGGGCTAGGTTGC
TGTGCACCGTCAGGGCTAGGTTGTTGTTCGTCAGGGCTAGGTTGCTGTAC
GGTGTCAGGGCTGCACCTACCCAAGGAGTGTTTCAAGAAATGGTGTCCCG
ACATGGAGATCACT
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Coding sequence (CDS) from alignment at Scaffold_372:343660..353273-

>EsuBft7766_2a-0001 ID=EsuBft7766_2a-0001|Name=EsuBft7766_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=723bp|location=Sequence derived from alignment at Scaffold_372:343660..353273- (Ectocarpus subulatus male Bft15b)
ATGGTACCACTCGGCGTCATGGTGTACGACGCCCTGCTGCAGTACAAGGC
TGAGCACGGCAATCTTCACGTACCGGTGGCCTTTCGCGTGCCGTCGAGCC
CGCCGTGGCATCAAGACCTGTGGGGGCTGGCACTGGGGCAAAGGTGTAGC
GCCTTTTGTGTAGCGGGTTCAATGCTGTACGGCCTCCGCAGGAACCCCGA
TCGGCTGAACCGGCACCCGGAGATACGGGCGGAGATCACCGCACTAGGGT
TCAGCTGGAAGGTACCCAAGAGGGGCCGTCGGAAAAGTATCGACACCACT
GCTGCCGCCGCCGCCGCTACATATGCCGGGGTCGATGGCACGGCGCCGAG
AAGTAGAGGCCGCGGCAGGAACGAAGCGCTCGGTGGGGAGCCGGGAGGCG
TAGCGGCGGCAGCAGCAGCGGTCCTGCGACCATCGCCACCGCCGTCGGAT
GCCGCTGTTGTTGTGTTGGCGGCCGAAGGGGTCGGGCAGGACGTCGAAGG
CCCTTCGCGGTTAGGCGATGGAGCTGGTGGTCGTGGGTTTGATGTTGGGG
GTGAGGGTGGTACTGTTGTCAGTGATGGTAGGTCTGAAGGTGTGCGTGCC
CGAAGTCGGGCACATGGTGAAGATAGCACCACAGCGAAGACGAATAAAGG
TAGCGTAGTAGCGAACGGTAGTTCAAGTTGTAGGAATAGAGCGGGTCGAC
TCCTGTCCCCCGCAGGCTGTTAG
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