EsuBft76_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft76_6a-0001
Unique NameEsuBft76_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:259254..264679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FPR6
ProteomeIdEsuBft76_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon10
Max annot lvl2759|Eukaryota
Length150
Hectar predicted targeting categoryother localisation
Evalue2.54e-129
EggNOG OGs2A9UG@1|root,2RYJF@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft76_6aEsuBft76_6aEctocarpus subulatus male Bft15bgeneScaffold_627 259254..264679 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_6a-0001-exonagat-exon-71943Ectocarpus subulatus male Bft15bexonScaffold_627 259254..259402 +
EsuBft76_6a-0001-exonagat-exon-71941Ectocarpus subulatus male Bft15bexonScaffold_627 259654..259697 +
EsuBft76_6a-0001-exonagat-exon-71947Ectocarpus subulatus male Bft15bexonScaffold_627 260725..260729 +
EsuBft76_6a-0001-exonagat-exon-71940Ectocarpus subulatus male Bft15bexonScaffold_627 261203..261287 +
EsuBft76_6a-0001-exonagat-exon-71942Ectocarpus subulatus male Bft15bexonScaffold_627 261484..261642 +
EsuBft76_6a-0001-exonagat-exon-71946Ectocarpus subulatus male Bft15bexonScaffold_627 261798..261824 +
EsuBft76_6a-0001-exonagat-exon-71944Ectocarpus subulatus male Bft15bexonScaffold_627 262443..262532 +
EsuBft76_6a-0001-exonagat-exon-71945Ectocarpus subulatus male Bft15bexonScaffold_627 262843..262974 +
EsuBft76_6a-0001-exonagat-exon-71938Ectocarpus subulatus male Bft15bexonScaffold_627 263151..263225 +
EsuBft76_6a-0001-exonEsuBft76_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 263480..263586 +
EsuBft76_6a-0001-exonagat-exon-71939Ectocarpus subulatus male Bft15bexonScaffold_627 264052..264679 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_6a-0001-exonagat-five_prime_utr-13717Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_627 259254..259402 +
EsuBft76_6a-0001-exonagat-five_prime_utr-13718Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_627 259654..259694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_6a-0001-cdsEsuBft76_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 259695..259697 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_6a-0001-exonagat-three_prime_utr-21283Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 264131..264679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_6a-0001EsuBft76_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 259695..264130 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft76_6a-0001 ID=EsuBft76_6a-0001|Name=EsuBft76_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1501bp|location=Sequence derived from alignment at Scaffold_627:259254..264679+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTAGCGGTTGGGGCGATAGTCTACGTCGTGTAGTTGACGTTGTTTACACG
GCAGGAGCACCCAGCTCTCAGCACATTTGCTATTTTTCAGAGCGAACAAT
CTTGGGTCCTACTATTGCACCAGGAGAGAGGGACAAAGAGGAGCGACAGT
GAGGACGAGCAGTCCCCAAGAATCGGCCAGTACCATCAAGATGGCGAGTG
TTTCGGACTCAGATGATGACATGCCGCTCGCGCAATTTTCGAAGAAGCAT
CAGAAGAACGCGGCTACTGGAGAATCGGACAAGGCAAAGACGAAAGCCAA
GCCAACCGCCAAGGCAAAGACTACCATCAAAAGTCCGGCCGCCAAGAAGC
TGGTGACCAAGAAGGGGTCGGCGAAGAAGCCCACCCCCGCGAAGAAAGGC
GCCAAGAAAACGCCCACGCTGAAAGCTAAGAGCAAGGGTCCGGCAGCGAA
GAAAGCTCCGTTGAAAAGGAAAACAAAGCGGAAGACGAAACCACGAGAGC
AGGAGTCTTCGGGGGACAAGCTGGTCACTCGATCAGGAGTGCTGTACGAG
ACGAAGAAGGGTGAGATAATTCAGAAGCTCCTCTGCCGTTGGTGGTATGC
AATGGAGTGGCCGGCAAAGAAGGACCTGCGGCCAGCTCCTCCTTCGTACG
AGGCGCTGGAAGGGTACCCGGGCGTGTTCATCTGTGTCGAGGGCGACGAT
ATCGGCAAGCTCCTCGACGTGCGCAACAAGGAGACCTGTCCGTGCTTCAC
GAATTTCGCAAAAAAGAGTTCGGAGGAGCTGAAGGGGCTTTTGGAGACAG
CGTTGACGACGCAAAAGGAGGCGCTGATTGCTCACTGGGGGAAAAACGTG
GCCGAAGAGGCGAAGATCGACAGGGAGCTCAAGTGGTTGAAGAGCGTGGA
CCCGGCTAAGGCAGACAAGGCAGCTGTCAGGGCGCTTGCTGGAAAGTTCT
AGACCACCGCGTGTACAACGCGATGACGAAACAGGGCCGAAGGGTCGGAG
CCGACCGACACTAGTACTTTAACGTTACTTATTTTGGAGTAGAATATGTT
TTTTCTAAATATGTAACGTATAGTCGGCTACAATGAAGTATGCGATGAGA
GGACCACGAGCTCCAGCAGTATACGGGGACCATGCCTTTGAATGTGCGTT
TGTTGGACCGTTTGGCTGTGTCACAGCAGGTCGTTGGAAAAGTTCGTTTG
ATTGTGTCAGTGCTGCCTGTGGTAGCCTCGAAATGCAGCCTCGAAATGAC
CTTCGTGTACAGACACCGGTTTAGGTGGACGCGCGGCTAGCGCAATCGCA
GGTCCTTTTGTATGTCACTTGAAGTCTGCGAGTCACTCGCACCACCCTCA
CGATTCCTGTTGTATTATGGTGAGTGGACACAATAACATGTGCGTACACT
GAACCAGTATCAGCCACTTAGGCGTGTACGTCGATCAACCATACAGCTAA
TTTATTTTTCATCAACCATACAGCTTATAGAAAGATTTGGTCACTTTTCA
T
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protein sequence of EsuBft76_6a-0001

>EsuBft76_6 ID=EsuBft76_6|Name=EsuBft76_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=253bp
MASVSDSDDDMPLAQFSKKHQKNAATGESDKAKTKAKPTAKAKTTIKSPA
AKKLVTKKGSAKKPTPAKKGAKKTPTLKAKSKGPAAKKAPLKRKTKRKTK
PREQESSGDKLVTRSGVLYETKKGEIIQKLLCRWWYAMEWPAKKDLRPAP
PSYEALEGYPGVFICVEGDDIGKLLDVRNKETCPCFTNFAKKSSEELKGL
LETALTTQKEALIAHWGKNVAEEAKIDRELKWLKSVDPAKADKAAVRALA
GKF
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mRNA from alignment at Scaffold_627:259254..264679+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft76_6a-0001 ID=EsuBft76_6a-0001|Name=EsuBft76_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5426bp|location=Sequence derived from alignment at Scaffold_627:259254..264679+ (Ectocarpus subulatus male Bft15b)
TTAGCGGTTGGGGCGATAGTCTACGTCGTGTAGTTGACGTTGTTTACACG
GCAGGAGCACCCAGCTCTCAGCACATTTGCTATTTTTCAGAGCGAACAAT
CTTGGGTCCTACTATTGCACCAGGAGAGAGGGACAAAGAGGAGCGACAGG
TGAAACCAGACGCGTTTTTTTGTTGTCAAAACTCCTTCCCAGTCTTCCCT
CTGTGCGACTGCTGTTGTGAACCTAGCGTCCATGCCTAATAGTCGGTAAG
TACTGCCTGCCGTCATACGAAATTTACTCTCACCATCTCTCCATAGTAGG
CATTGCACATACCTCTCTCTCGCGCGTGTACGGCCCCTAACCAGCATCCC
CACCGCCTGTGATGTCATGCCTACCTCTCCCGCAATGATGGCGCTCTAAG
TGAGGACGAGCAGTCCCCAAGAATCGGCCAGTACCATCAAGATGGTAAGA
ATACAGCTTAGCAAGGATCAGCATCCGCAGCAAGTCAATATCAAATCTCT
ACATGATGTCGATCTTCACAGCCAATGTGCCCTGCTCGTTGGCTAGTCAA
GAAGGGAAATCAGTTCGGTCATGTGAAGTACATATGTGATTGGTTATGGA
AGCGGCACCCTCCTGGTTTGCAAACCAAACAAATCGCGATACCCCCACTC
CAGGTTTATGTCTGTAGACCAGCAGAACGGCCACACATACGCTGTTTTTT
CGAGTTTGCTTTGGCGGCCCCCTGTTTAGCGGAATTCCTTGTTACAAAAC
GGCGTAGTACCGCTGCATCCCGGTTGAAGGCTTTTACCGTGCCCACAATA
GCCGTTGCTTGAGCTGGGTTCAGCGAGCAATGGTGGTCATCGATTAAAAG
TTGGCGGAGACCCCCTCGCGCACGCGCAACAAAAGACAACTCGTGCGCGG
ATGGAGAGTTGTGCAACCTTCTGCGTAAGAGCAGTAGCAGAAACGAAGTC
ACTACGTAAAGCGTTAGCCCAGTGTAGCGGTTCGTACTATTGAGACTCTT
CCGGTTGAGCGGCTAAGTGGGTTCGGCGGCGTGCCCAAATAAGCGGTCCC
ATTTTGTCCTCACACTACACGTAAGTGCAGCTAAACCGACAAGTGGGAAC
GAAATGCGGATCAATCACACCTCGCTCGGGATCTAGCGAATAGAATAGTA
GAACTTTTCCGGGGTGACTCGCTGAATCGATATTGAGATTACAGGAACCG
GCTGCTTCTGACAAATGATTTACACAATATTGCCATATGATTGGTGCGGT
GTGATAAGCGGTGGGTATTTTTTTTTGAACCCACTGGAAAGAACGGAAAA
CAACCCGACGATTAGCAGAAAGCAGCGGGGAAACAGTGTTGTTTGTATTC
AAATCCCTCTTCCTTGTCGCGCTCGTTTGCAAGAAGTATCCTTGACCTTC
GCCCCTTTCCCGTCATCCGCCACATTCGTGAAAATCTGCTTGGAATGACC
GCTCTCTACACTGGGCTGCAGGCGAGGTAAGCATGTATCTGCATTGTTCG
TATTTTGCACGACTGTCCCATGATCAATTGAGCTCTTGAGAGGCGCCTCC
TGAATTATCATCGTTGCATCAGGAGTGTCTCATTTGTTGTCGCAGGTAAT
CCAGGCTCGGAGATGCGGGCGTTCAAGGAGTGAAGACGGTATGTTCCTGG
TGACCCTTTGCGAAGACAACGATGCTTTCACGTGGATGTTTTTGGGAACA
ATTTCCGTTGAAAAGGAACCGATGGGCAAGCAGACGTGTGTACGGCCAGG
GAAAGGGATGATATGCAATGAATCGGCGGAAAAACACCGTCTGTATTCGC
TGTGCCTAAAAGCGTAAACACGACTATACCGCCTTCGTTTGCCGTTGAGT
CCGTGCCTGTTCCAAGACGGGCATCAATTTTGCTGGCGGGTCTGCAATGC
TGCACTGTTGAGCGCATATCCCTCGCCGCCTTCGTTGTTCCCTATCAAGT
GTTTCGGACTCAGATGATGACATGCCGCTCGCGCAATTTTCGAAGAAGCA
TCAGAAGAACGCGGCTACTGGAGAATCGGACAAGGTGAGGCTGGGAATGC
GTCGTTGACCAGCATGTGTGTGTAGTAACTTCAGGCTTACAAGCTACCCG
ATAGATGGACGTCTCGTTGCATTTTATCACGGGGTGGTTTGCATCAAGCT
CTTGTCGCACGACCTACTACACAATTTCAGTATTCTATACTCGTGTGTGC
CGGCGTGTGGTTTCTCGTTTCTGGGCAAAGGCAAAGACGAAAGCCAAGCC
AACCGCCAAGGCAAAGACTACCATCAAAAGTCCGGCCGCCAAGAAGCTGG
TGACCAAGAAGGGGTCGGCGAAGAAGCCCACCCCCGCGAAGAAAGGCGCC
AAGAAAACGCCCACGCTGAAAGCTAAGAGCAAGGGTCCGGTGAGTGAGCG
ATATGGCTCGAGGCTTCTTCGAGGTGTCAACTGGGAACGTCTGTGTTGAG
CGTAGCACCGTTGTTTGGTTTGAACAACTCCCCTTCTGACCGCTCGACGC
CTGACTCTCAATTTCCCCCGCTTGCGCCTTGTCGTGACTCCCAGGCAGCG
AAGAAAGCTCCGTTGAAAAGGGTGCGTCCGATGGCATAGCGTCTATAGAT
AGAACGGTGTCGAATGTGAATGACGCATTTTGTAGCGATTCCGATGGTTG
TTGCCCGCGTGTCTGGCTGTTGGGAAGTATATCTCAAGGGTCGGCTGAGT
ACAACACGATCGACTTCATAAGTCGCGAGGGAAGGTATTGCTGTACCCTT
ATCGCGATAAAAAGGTCTTAGGTCGGAAACGCAGGAGGGAGTCCAGCTCC
CCCCTCCTATGTGACCCCGGTTGGGTCGTCTAGCTAGTTGAAGTGGAGGA
TGGGGGCCAGAGGGGCAGACGACAGAGTCCATTCATGGGAGAAAAATAAA
TAACTACCGGTCATAAAGCATGACGCATTGATCTCGTCATAGCTGAGGTT
CTTGATGGGGTGAATGGATGCAATTACATCATAATGGACGGATTTTGGTC
GAAAACTCGCCGAACAGAGAGACTCCATCAGCTACTCAAGTCTTGTCCAA
GCTGGGTAGATCGGCCCTTTCCGATTCTCTTATACTACCGCCGTTTGTTT
CAGTATCCGCGACACTTGCATCTCCCATGACAAGCTGTGTTCCGCTCTGT
ATTTTTGTTTCGCACATGACGCCAACCCGTATCCCAAAGAAAACAAAGCG
GAAGACGAAACCACGAGAGCAGGAGTCTTCGGGGGACAAGCTGGTCACTC
GATCAGGAGTGCTGTACGAGACGAAGAAGGTGTGTGTTTGTACGGAAGTA
GACCCACGCTCTTGCCCGTTTATTTCCACTGCTGTGGGCGTCTTGGCTCT
TTCACATGAAGTGTGATTGAAGCCGAGTGTAGCTGCTTTCCGTGTACACG
ACGGGGCTCAGATTCAGTACCACCCCCCCCTCGCGCGCAGCTAGTACGCG
GGGTATAATGCACCTTCAACACGGAGGACGTTCGAGAGGACTATATATGC
CACAGATGACCCCTTCTGCCGTTGCCAGATGGATCAGTTTTCTTTGTGGT
TAGGTGACTACTTGTAGCATTTTTCATCCCCGTCCTCAGGGTGAGATAAT
TCAGAAGCTCCTCTGCCGTTGGTGGTATGCAATGGAGTGGCCGGCAAAGA
AGGACCTGCGGCCAGCTCCTCCTTCGTACGAGGCGCTGGAAGGGTACCCG
GGCGTGTTCATCTGTGTCGAGGTGAGAGTCGGAGGATTGGCGTGCGCCAG
CACCGCGAAGTACATGCTGCACCTCGGTTCCCTCATTACTTCGGGATAAC
CCTCGCCGTTTTGGGAGCGTTTACTTTTTCAATTGTGCCCGTCACGAGCT
GTTGGTTTTGTGCCGTCTCTCCGTTGCATTTGACGTCGGTCTGGCAGGGC
GACGATATCGGCAAGCTCCTCGACGTGCGCAACAAGGAGACCTGTCCGTG
CTTCACGAATTTCGCAAAAAAGGTTGGTGGAATACTCGCCCCGTTTGAGA
TTCCTCAGTCAAAAAAGGTTGGCGTGGGCAAAAGCATATGGATGAGGGCT
CGTGCAGTCTCGAGCCCCCTCGAGTTACGGCGGTGTTGCATGCGTGTACA
TGTAGGCTTGGTTGATGTGCTGCCGTTGCCTCGAGTTGCTGGGTTGGCTC
GATCATGGCTCTCGCCCGTCAAATGCCCCGTGAAGGTGGGAAATGTTGAT
GTGCTCTGCTGTGCCCACTTGGCCAGAGTTCGGAGGAGCTGAAGGGGCTT
TTGGAGACAGCGTTGACGACGCAAAAGGAGGCGCTGATTGCTCACTGGGG
GAAAAACGTGGCCGAAGAGGCGAAGATCGACAGGTGATGAAGATGTCATC
TTTGCCTTGTGTCACTCTGCAACCTCTTTCATGACCGGTACTTCGTCATG
CAGCCCTCAGTATTACAAGTAGTGCTAGCCCGACAAATGGGGGCAATTCG
CTCTCCATCCCAAAAGCTTGGGGTAGATGCGTGCTGCGCGTTATTAAATA
TGGCCGAAAGCAAGGCGCTTCTCAACATCAGATCCCGGTTTGCCCCCAGG
TTGACGTGACGCTCGCCACCTTTCTTGTTTTCCGCGCAAGAGAAGCCAGG
GCAGTTAACAAGCGCATGGCATGGAAAACACCTTGACGGCATTCTACGGC
CGTCTAGCATGCTTTTGTTGACTGAAGAAAAAGCAGTTGCGAAACAGTAT
CAACCACTTCGTAACATCACACGTCACTTCACGACTCTGAAATGGGAGTG
ATGTCCTTCGGACGTATTTTGTCCACCCACCCTTTCGTTGACGTGCAGGG
AGCTCAAGTGGTTGAAGAGCGTGGACCCGGCTAAGGCAGACAAGGCAGCT
GTCAGGGCGCTTGCTGGAAAGTTCTAGACCACCGCGTGTACAACGCGATG
ACGAAACAGGGCCGAAGGGTCGGAGCCGACCGACACTAGTACTTTAACGT
TACTTATTTTGGAGTAGAATATGTTTTTTCTAAATATGTAACGTATAGTC
GGCTACAATGAAGTATGCGATGAGAGGACCACGAGCTCCAGCAGTATACG
GGGACCATGCCTTTGAATGTGCGTTTGTTGGACCGTTTGGCTGTGTCACA
GCAGGTCGTTGGAAAAGTTCGTTTGATTGTGTCAGTGCTGCCTGTGGTAG
CCTCGAAATGCAGCCTCGAAATGACCTTCGTGTACAGACACCGGTTTAGG
TGGACGCGCGGCTAGCGCAATCGCAGGTCCTTTTGTATGTCACTTGAAGT
CTGCGAGTCACTCGCACCACCCTCACGATTCCTGTTGTATTATGGTGAGT
GGACACAATAACATGTGCGTACACTGAACCAGTATCAGCCACTTAGGCGT
GTACGTCGATCAACCATACAGCTAATTTATTTTTCATCAACCATACAGCT
TATAGAAAGATTTGGTCACTTTTCAT
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Coding sequence (CDS) from alignment at Scaffold_627:259254..264679+

>EsuBft76_6a-0001 ID=EsuBft76_6a-0001|Name=EsuBft76_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=762bp|location=Sequence derived from alignment at Scaffold_627:259254..264679+ (Ectocarpus subulatus male Bft15b)
ATGGCGAGTGTTTCGGACTCAGATGATGACATGCCGCTCGCGCAATTTTC
GAAGAAGCATCAGAAGAACGCGGCTACTGGAGAATCGGACAAGGCAAAGA
CGAAAGCCAAGCCAACCGCCAAGGCAAAGACTACCATCAAAAGTCCGGCC
GCCAAGAAGCTGGTGACCAAGAAGGGGTCGGCGAAGAAGCCCACCCCCGC
GAAGAAAGGCGCCAAGAAAACGCCCACGCTGAAAGCTAAGAGCAAGGGTC
CGGCAGCGAAGAAAGCTCCGTTGAAAAGGAAAACAAAGCGGAAGACGAAA
CCACGAGAGCAGGAGTCTTCGGGGGACAAGCTGGTCACTCGATCAGGAGT
GCTGTACGAGACGAAGAAGGGTGAGATAATTCAGAAGCTCCTCTGCCGTT
GGTGGTATGCAATGGAGTGGCCGGCAAAGAAGGACCTGCGGCCAGCTCCT
CCTTCGTACGAGGCGCTGGAAGGGTACCCGGGCGTGTTCATCTGTGTCGA
GGGCGACGATATCGGCAAGCTCCTCGACGTGCGCAACAAGGAGACCTGTC
CGTGCTTCACGAATTTCGCAAAAAAGAGTTCGGAGGAGCTGAAGGGGCTT
TTGGAGACAGCGTTGACGACGCAAAAGGAGGCGCTGATTGCTCACTGGGG
GAAAAACGTGGCCGAAGAGGCGAAGATCGACAGGGAGCTCAAGTGGTTGA
AGAGCGTGGACCCGGCTAAGGCAGACAAGGCAGCTGTCAGGGCGCTTGCT
GGAAAGTTCTAG
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