EsuBft76_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft76_4a-0001
Unique NameEsuBft76_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:277105..280173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FPR8
ProteomeIdEsuBft76_4
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSSF58038
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR000727
Protein domainsG3DSA
Protein domainsTRANSMEMBRANE
Protein domainsPTHR12791
Ownerapollo_admin@sb-roscoff.fr
Notebet1 homolog os:mus musculus gn:bet1 pe:1 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1472
Hectar predicted targeting categoryother localisation
Evalue6.22e-86
EggNOG OGsKOG3385@1|root,KOG3385@2759|Eukaryota
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-20_001100.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameBET1
KEGG koko:K08504,ko:K21412
KEGG Pathwayko04130,map04130
GOsGO:0000139,GO:0000149,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005795,GO:0005798,GO:0005801,GO:0005802,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019905,GO:0022607,GO:0030133,GO:0030134,GO:0030135,GO:0030173,GO:0031090,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033116,GO:0034613,GO:0042147,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048280,GO:0048284,GO:0050789,GO:0050794,GO:0051049,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060627,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098827,GO:2000156
Descriptionprotein transport
COG categoryK
BRITEko00000,ko00001,ko03036,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0031985
GO0005801
GO0048280
GO0019905
GO0031201
GO0000139
GO0016021
GO0006888
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft76_4aEsuBft76_4aEctocarpus subulatus male Bft15bgeneScaffold_627 277105..280173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_4a-0001EsuBft76_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 277354..279370 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_4a-0001-exonagat-exon-71934Ectocarpus subulatus male Bft15bexonScaffold_627 277105..277530 +
EsuBft76_4a-0001-exonagat-exon-71933Ectocarpus subulatus male Bft15bexonScaffold_627 278848..278889 +
EsuBft76_4a-0001-exonEsuBft76_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 279170..280173 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_4a-0001-exonagat-five_prime_utr-13716Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_627 277105..277353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_4a-0001-cdsEsuBft76_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 277354..277530 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_4a-0001-exonagat-three_prime_utr-21280Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 279371..280173 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft76_4a-0001 ID=EsuBft76_4a-0001|Name=EsuBft76_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1472bp|location=Sequence derived from alignment at Scaffold_627:277105..280173+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGCTTGCTGGGCTGTAACTGCTCTGGTGCACCTCTTCTCTCCACTTTGT
CGCCCTTGTCTCCCCAAACGAGCTTCTGATCGAGGGTTCCCTCTCTCTAC
CACCGCAGTAGTTCTCATTAAAATTATTACGAAAAACTTCTGTGTCAAAA
GGGGCAGCAGTTGGGAGGCGGTGTTGAAAGTCAGACGTGAAGGGGTGAAG
GCTTCGCCTTGCCGAGGACGGGCAGGGTGAACTGGGGCGTGGGTTGCGGA
TGAGAAGGAGACCTGAGAACGGCGAAGAGATGCACAATGCCTTCGGATCT
CAAGGTCGAGGCGGGAGCAGTACTGGTGGGGGCTATTACTCTGCACCAAC
AGATCGTATCAGGGAGACGAACCACAACATCATGGAGATGCAAAATAACG
CACACATCGACGACCTCAGCGATCAGGTGTCTCGACTCAAGCACCTAACA
ATTGATATTGGACAGGAGGTGCGCAGTCAAAACGACTTAATTAGCGGAAT
GGAAGGACAAATGTTCGATGCTCGAGGTCTGCTCGGGGGCACTCTTCGTC
GGATCAACACCATGATGGCCCAGGGCGGTAGTCGACACATGTGCTATCTT
GTGGCCTTTATTGTGTTTACGTTCACGGCCATATGGTACATCTTGAAACA
TACCAGAGGTGGACGGTAGCATGATTCGTCTGGTGGATGTTGTGCGTTGT
TTTTGGCCTCAGGACTGCAGCTGCCTTTCTCGGCAATCGTGGGCTCGAAA
TTTCGAACACTTGAAAACGTCGTGACGTTGTTAACGTGGTGGTGTCTTGG
ATACGAACTTTCCAGCTAGACGTTCCCTGTGGATCTGTTCCATGTGTTCC
AGGTTGCTATCTAGTATTCACCATGCCTGGTGCCCAGGTCAGTTGTCAGT
TAGCATGGTTTTCCCTGATTTATGCATACGCATCGAGATGCACTTCTCGT
TGGAGTCTACTGGTGTTTCTGCTGTGTTTCATTCGTAGATACGTGTGTTG
TAATGTTAGGCTCCCAGGGTAATCATTGTCGTACGTAGCAGGTGTCCTGG
CAGGTTGTGAAGGCTGGCCTGTATGGGACGCCTACTGCAATCTATGTACA
CTATCGTATACTCCATCCAGTAAAAATTTTCACGCTCCGCCAGAATCACC
TGATATTTCTATCGAGGAATGTACGACCATCCTCCCTGATGCCCACAACT
GTCAGTGCGCGGCCAGAAGCTAGTTACGTCTGGGACGGATGTTTGGTCCG
GCATTTTTTTTCGGGCAGAAAATCGCAGTCAGTCAAATTTCATTTTCAGA
AAGCTTCAAACGTCGAATGTGGGGTTCACGGTTTTTGCACCGGTTTGTGA
CAGGTCCCGTGGGATAGCATACTCCGGAGTATGACGCCCAGAGTTTCGGT
TTTGTGGATATGTTGGAGGCGATGGATGTTTACCGACTAAAAACTGGTTC
GAACAATTTTGGAAATGCCCGC
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protein sequence of EsuBft76_4a-0001

>EsuBft76_4 ID=EsuBft76_4|Name=EsuBft76_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=139bp
MRRRPENGEEMHNAFGSQGRGGSSTGGGYYSAPTDRIRETNHNIMEMQNN
AHIDDLSDQVSRLKHLTIDIGQEVRSQNDLISGMEGQMFDARGLLGGTLR
RINTMMAQGGSRHMCYLVAFIVFTFTAIWYILKHTRGGR
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mRNA from alignment at Scaffold_627:277105..280173+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft76_4a-0001 ID=EsuBft76_4a-0001|Name=EsuBft76_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3069bp|location=Sequence derived from alignment at Scaffold_627:277105..280173+ (Ectocarpus subulatus male Bft15b)
TGGCTTGCTGGGCTGTAACTGCTCTGGTGCACCTCTTCTCTCCACTTTGT
CGCCCTTGTCTCCCCAAACGAGCTTCTGATCGAGGGTTCCCTCTCTCTAC
CACCGCAGTAGTTCTCATTAAAATTATTACGAAAAACTTCTGTGTCAAAA
GGGGCAGCAGTTGGGAGGCGGTGTTGAAAGTCAGACGTGAAGGGGTGAAG
GCTTCGCCTTGCCGAGGACGGGCAGGGTGAACTGGGGCGTGGGTTGCGGA
TGAGAAGGAGACCTGAGAACGGCGAAGAGATGCACAATGCCTTCGGATCT
CAAGGTCGAGGCGGGAGCAGTACTGGTGGGGGCTATTACTCTGCACCAAC
AGATCGTATCAGGGAGACGAACCACAACATCATGGAGATGCAAAATAACG
CACACATCGACGACCTCAGCGATCAGGTAAGGTTTGGATTCAGAACATGT
CACCCGCAACTTGTAATCGTATGCATATCAACTGAGCAGAACGACTTGAC
CCTGACCAATGTGTAGAGAATTGGGTATTGTATTGGTGCCGTTAAGCTAG
ACCAACTGCGTTCGCCCGAATCTCTGTAGTAGCCCCTGGCAAGCAGGGAG
GTGTTCATAGCTGATTGCCTACACTTGAGGTTGGCTCCGTCGCTTGTGCA
AATCAGACGTTTTCCCGGAGTTTGCCACGCTGATGGCTGTCTTCTAACAA
GGAATGCAGCAACTCTTCCGTGGCGTTCTTTGATTCCAAATGGTCAACCG
GCCAGTAAACATGCGGCCCAACCCCTTCACCCTTCGCCACTCGGGTGTTG
TACTCGTGTGGGTTGCCTGTACCACACGTGATGAATGCTTTGCAGTTGTG
GTTGTTGCTGTGCTTCTCTGTTTTGTCACTGTTTTCAAGCAGTGGCCATC
GAAGATCACGATGAGCACAATCTGAACGCACTCCACGACATTTGGTAGCA
TCGCGGCAAGGAAAACGACCTTCCTGCTGGTGTGCATCACACTGCCTTGC
GTCGTGAAAGAGGAATACTTCAATTGGAAACCTTGCGAGTCGAATGTACC
AGAGAGCAGGCGAACCCGCTAGTAGTGCAGACAAACGACGACGCATGTCG
CCCGGGAGGAACCCCTGCCGACCGTTGTTCTTGTACGTCGCAATGCAAAT
CATCGGCTTATACGTCAAAGAGATGCCAATGGCGGGTTTCGTGGGTGACA
GTTCACCTTCAGAGCACTTTTTGCTCGTATCCTTCGCCGTACTTAGCGCC
TTATTTGGCGTCTCCGGTTCACATTCTCGATGCTCCATTTCTCTTCAAAG
TTTTGCGGCCGCAAGTACGTCGTTGACACTAGTCCCACTTGCCAACGTGT
CGACATTGTCGAGGTTTTGGACTTGGGTTTTTCGATTGTCCTTCCAAGGC
CGATGTTTGTGTGTTCGTCCCATCTATTTTGGCTCTAGTCATACACCTTT
CGGTGTGAATGTTTTACGTATCAGTCTGGGTAACAGGAGTTTTTTTTTTT
GTCTCGATGAACCCTCTCCGATACATTCAGCTCAACGCATACGTTGTGAA
CTTCAGCTGAAGTCAAGAATGCCAGAGAATACTATCCCACAGACCTTTTG
TAGTGCCAATGAGTGCCGCATGAGGTACCTTTTGATCCCGTGGCTGAGAT
TCGGACTCGTCGTCAATGACATTGATTGCACATCACCTACGCGCCGTTGT
TTTTAAGTTTTTACTGATTGCCGCGCGTCCTGTTTGGTCACAGGTGTCTC
GACTCAAGCACCTAACAATTGATATTGGACAGGAGGTGAGAGGTCTTCCA
GAGGAAGTGAAACAGAAGCTTTGACGTTGGGCTTCTCTCGATTCGAGGGC
GTTACTCTTGATGAAGGGATCACCCTCGGTCCTTTCCGTGTTGAAGAAAT
AGTCCCAGCGCGGTGGTTTTTCGTTGCTCATCACCGTGTAACTCGACCAG
TAGATGCCATCGTCAGCCCCGTTGCTGAGGGTGCCACCGGAAGCAGTTGC
CTATGCCCGTCTCACAGTGATATGCGCCTCTTTTTGATTGCCGGTTCCAT
TGTATCACGTGACAGGTGCGCAGTCAAAACGACTTAATTAGCGGAATGGA
AGGACAAATGTTCGATGCTCGAGGTCTGCTCGGGGGCACTCTTCGTCGGA
TCAACACCATGATGGCCCAGGGCGGTAGTCGACACATGTGCTATCTTGTG
GCCTTTATTGTGTTTACGTTCACGGCCATATGGTACATCTTGAAACATAC
CAGAGGTGGACGGTAGCATGATTCGTCTGGTGGATGTTGTGCGTTGTTTT
TGGCCTCAGGACTGCAGCTGCCTTTCTCGGCAATCGTGGGCTCGAAATTT
CGAACACTTGAAAACGTCGTGACGTTGTTAACGTGGTGGTGTCTTGGATA
CGAACTTTCCAGCTAGACGTTCCCTGTGGATCTGTTCCATGTGTTCCAGG
TTGCTATCTAGTATTCACCATGCCTGGTGCCCAGGTCAGTTGTCAGTTAG
CATGGTTTTCCCTGATTTATGCATACGCATCGAGATGCACTTCTCGTTGG
AGTCTACTGGTGTTTCTGCTGTGTTTCATTCGTAGATACGTGTGTTGTAA
TGTTAGGCTCCCAGGGTAATCATTGTCGTACGTAGCAGGTGTCCTGGCAG
GTTGTGAAGGCTGGCCTGTATGGGACGCCTACTGCAATCTATGTACACTA
TCGTATACTCCATCCAGTAAAAATTTTCACGCTCCGCCAGAATCACCTGA
TATTTCTATCGAGGAATGTACGACCATCCTCCCTGATGCCCACAACTGTC
AGTGCGCGGCCAGAAGCTAGTTACGTCTGGGACGGATGTTTGGTCCGGCA
TTTTTTTTCGGGCAGAAAATCGCAGTCAGTCAAATTTCATTTTCAGAAAG
CTTCAAACGTCGAATGTGGGGTTCACGGTTTTTGCACCGGTTTGTGACAG
GTCCCGTGGGATAGCATACTCCGGAGTATGACGCCCAGAGTTTCGGTTTT
GTGGATATGTTGGAGGCGATGGATGTTTACCGACTAAAAACTGGTTCGAA
CAATTTTGGAAATGCCCGC
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Coding sequence (CDS) from alignment at Scaffold_627:277105..280173+

>EsuBft76_4a-0001 ID=EsuBft76_4a-0001|Name=EsuBft76_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=420bp|location=Sequence derived from alignment at Scaffold_627:277105..280173+ (Ectocarpus subulatus male Bft15b)
ATGAGAAGGAGACCTGAGAACGGCGAAGAGATGCACAATGCCTTCGGATC
TCAAGGTCGAGGCGGGAGCAGTACTGGTGGGGGCTATTACTCTGCACCAA
CAGATCGTATCAGGGAGACGAACCACAACATCATGGAGATGCAAAATAAC
GCACACATCGACGACCTCAGCGATCAGGTGTCTCGACTCAAGCACCTAAC
AATTGATATTGGACAGGAGGTGCGCAGTCAAAACGACTTAATTAGCGGAA
TGGAAGGACAAATGTTCGATGCTCGAGGTCTGCTCGGGGGCACTCTTCGT
CGGATCAACACCATGATGGCCCAGGGCGGTAGTCGACACATGTGCTATCT
TGTGGCCTTTATTGTGTTTACGTTCACGGCCATATGGTACATCTTGAAAC
ATACCAGAGGTGGACGGTAG
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