EsuBft76_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft76_19a-0001
Unique NameEsuBft76_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:103488..105645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft76_19
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length138
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft76_19aEsuBft76_19aEctocarpus subulatus male Bft15bgeneScaffold_627 103488..105645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_19a-0001EsuBft76_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 104138..105268 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_19a-0001-exonagat-exon-72018Ectocarpus subulatus male Bft15bexonScaffold_627 103488..103744 +
EsuBft76_19a-0001-exonEsuBft76_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 104107..104176 +
EsuBft76_19a-0001-exonagat-exon-72016Ectocarpus subulatus male Bft15bexonScaffold_627 104405..104584 +
EsuBft76_19a-0001-exonagat-exon-72017Ectocarpus subulatus male Bft15bexonScaffold_627 104771..105645 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_19a-0001-exonagat-five_prime_utr-13705Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_627 103488..103744 +
EsuBft76_19a-0001-exonagat-five_prime_utr-13706Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_627 104107..104137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_19a-0001-cdsEsuBft76_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 104138..104176 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_19a-0001-exonagat-three_prime_utr-21273Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 105269..105645 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft76_19a-0001 ID=EsuBft76_19a-0001|Name=EsuBft76_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1382bp|location=Sequence derived from alignment at Scaffold_627:103488..105645+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTACAATAGTCGACAACAGCAGCAGCAGTTGTTGTGTTGGGCGGGGT
ATTTACGTATTTACCATCCCTCAAGAGCAACGTCGTGTGTTGCCATTTTG
GCTATGGGAGGTGACGACATCCTCCGAATCTAGACCAAGATTACGAGAAG
GCCTATAGGTATCAAAACAACAGCATGTGCCTCGGCTGGGGACAACGTTT
AACTTTTACGGGGAAAGAGTAACATCTACACAGGCAGGCAGCCAGCCATC
TACAGCAGCCAGTTTCCTCTGTTGAGATGTGACGAGGAATGTCAAGCGGT
GACCGAGCGTGCTCGGTCAAGGCTAGGGTAGAGTACACGGGCAAGAAGGG
CAGGTCGGCGGGGAAGCAGACGACGGTGGTGACGGACGCGGAGGCCTTGT
GGGCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAG
AGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGG
ACTGATGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGA
GACTGTGTTTCGCGGGCTTTGTTATGCGCATGAAGGACAGCCGCCTCCCC
AAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGCGG
GCAGGAGAGCGACTGGGTGTCTCGCCTAGGAGAGGACCTCGTGGCCTTCA
ACATGGGAGACGAAAAGGAAGGGGGGAAATGGAAAGAGAGCGCCAAGGAC
CCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATGAG
GAAATGGCACAGGCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGA
GGGAAGCAGAAGCAGAGCGTACGACCATCTCAGGACCGAAGAGAAAGAGA
ACCGGCGAAGCGGCGGTGGGGGGGAAGAAACGGCGAACGGGCACTGCTGT
AGAAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGAACAATGTACCCG
GCTGATGTTGTTGCGCCCTGTTTCCCTTCCTGCTGTATGCTATACTCCTT
TATGTATGTCCTTTGTATTGCCTTCGGCGCCTGTGCTGTGTTTCCTTTTT
TCATGTGCTCCCTGCCTACTCTGCTGTGTTGGGTACCTTGAACTCGCTTT
TGCTGTTGCCTTTATTTTTGTACGTCTTGCTGTCTGCCCATCTGCCGCCT
CTTTGTCCTGTTTGCTCCGTTACTCCCATGCCCTGGCGCGTAGTGCCTGG
TACTGGTACGTTACCCTTTGATTTTTTCTTTGGGCGGGTGTGGGAAGCGT
CCTCCTTATTTTTGTTTTTCTCTTATTTTGATCGGTTTCCGAGGGCTCTT
TTCTCGAACGGTCGGTGCGATACCTGTTCTTT
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protein sequence of EsuBft76_19a-0001

>EsuBft76_19 ID=EsuBft76_19|Name=EsuBft76_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=238bp
MSSGDRACSVKARVEYTGKKGRSAGKQTTVVTDAEALWAMLYADDAAIVS
RSPESLEKMMSVIVRVAGLFGLMAGCEETIEATVRKRRLCFAGFVMRMKD
SRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKE
SAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEAERTTISGP
KRKRTGEAAVGGKKRRTGTAVEASRAAEAALVANNVPG
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mRNA from alignment at Scaffold_627:103488..105645+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft76_19a-0001 ID=EsuBft76_19a-0001|Name=EsuBft76_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2158bp|location=Sequence derived from alignment at Scaffold_627:103488..105645+ (Ectocarpus subulatus male Bft15b)
TTGCTACAATAGTCGACAACAGCAGCAGCAGTTGTTGTGTTGGGCGGGGT
ATTTACGTATTTACCATCCCTCAAGAGCAACGTCGTGTGTTGCCATTTTG
GCTATGGGAGGTGACGACATCCTCCGAATCTAGACCAAGATTACGAGAAG
GCCTATAGGTATCAAAACAACAGCATGTGCCTCGGCTGGGGACAACGTTT
AACTTTTACGGGGAAAGAGTAACATCTACACAGGCAGGCAGCCAGCCATC
TACAGCAGTAAATACATACAAGTAGATTCAACAAGTTCACCACCTGCGAC
CCGACGACAGAGTTTGTACTTGTACTGCTTCAAATTATTGTTCCTTCCTC
GCAGTACTGGCGTGCAAGTTATCCTCACTACTTTTCGCTGCCTGCCCGTC
GCCGCCTTTATCAGGAGTGGCATGCAATTTTGTTTCAATTGTTTTTGAGC
TACACCTCAAAAGTACCGTAGCTTTCGGCGAGCTGGACCGGAGGTGAACT
ACGTACTGCTGTAGGTCCATTCGAGCAACTGGGAAAGGGCAGTCGTGTGA
ATACCCTCAACTTCGTGTGAGCTGAGGTCCCAATTTGGCGAGGTGGTATA
TGCCTACCACCGGAGGCAGGCCAGTTTCCTCTGTTGAGATGTGACGAGGA
ATGTCAAGCGGTGACCGAGCGTGCTCGGTCAAGGCTAGGGTAAGGTTGCG
AGTGGGCGTTGGCCGAGACTCTTCTTGGCTCTCGGTACCAACCATTATGA
ACCACCCCGACTTCGGAGCAAATACCCCACAAAGTAAAGGTCCAGAGTAG
AGCGATGAATTATCGTCTGCCGAAGGTTATTTACTCCCTTCGTATGTGTG
TGTAAGTATAAGAAGATACGAATATCCTGGCTTCCACATTGCGGACATGA
TCAAGATCGGGACACAGGTAGAGTACACGGGCAAGAAGGGCAGGTCGGCG
GGGAAGCAGACGACGGTGGTGACGGACGCGGAGGCCTTGTGGGCCATGCT
CTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAGAGTCTCGAGA
AGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGACTGATGGTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCGCCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGAC
CCACCGCCAGTTCCTTACACGGTGCATCGGCTGGAGGAAGCGGAAACGCT
CAGACCGCCCCCTGTCCTATGCCCCTCATCCAGGCAGGCTGCGAGGAAAC
CATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTA
TGCGCATGAAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGATG
GCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCG
CCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGGG
GGAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGTC
GAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGGA
AGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGCGTACGA
CCATCTCAGGACCGAAGAGAAAGAGAACCGGCGAAGCGGCGGTGGGGGGG
AAGAAACGGCGAACGGGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGC
AGCACTTGTGGCGAACAATGTACCCGGCTGATGTTGTTGCGCCCTGTTTC
CCTTCCTGCTGTATGCTATACTCCTTTATGTATGTCCTTTGTATTGCCTT
CGGCGCCTGTGCTGTGTTTCCTTTTTTCATGTGCTCCCTGCCTACTCTGC
TGTGTTGGGTACCTTGAACTCGCTTTTGCTGTTGCCTTTATTTTTGTACG
TCTTGCTGTCTGCCCATCTGCCGCCTCTTTGTCCTGTTTGCTCCGTTACT
CCCATGCCCTGGCGCGTAGTGCCTGGTACTGGTACGTTACCCTTTGATTT
TTTCTTTGGGCGGGTGTGGGAAGCGTCCTCCTTATTTTTGTTTTTCTCTT
ATTTTGATCGGTTTCCGAGGGCTCTTTTCTCGAACGGTCGGTGCGATACC
TGTTCTTT
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Coding sequence (CDS) from alignment at Scaffold_627:103488..105645+

>EsuBft76_19a-0001 ID=EsuBft76_19a-0001|Name=EsuBft76_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=717bp|location=Sequence derived from alignment at Scaffold_627:103488..105645+ (Ectocarpus subulatus male Bft15b)
ATGTCAAGCGGTGACCGAGCGTGCTCGGTCAAGGCTAGGGTAGAGTACAC
GGGCAAGAAGGGCAGGTCGGCGGGGAAGCAGACGACGGTGGTGACGGACG
CGGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCTCG
CGCTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGC
CGGCCTGTTCGGACTGATGGCAGGCTGCGAGGAAACCATCGAGGCCACCG
TGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGAAGGAC
AGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGG
ATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGCCTAGGAGAGGACC
TCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGGGGGAAATGGAAAGAG
AGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGC
ATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGGAAGCGTCCGCGAAGC
GCCAGCGCGCGAGGGAAGCAGAAGCAGAGCGTACGACCATCTCAGGACCG
AAGAGAAAGAGAACCGGCGAAGCGGCGGTGGGGGGGAAGAAACGGCGAAC
GGGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGA
ACAATGTACCCGGCTGA
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