EsuBft76_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft76_15a-0001
Unique NameEsuBft76_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:142553..143301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft76_15
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length54
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft76_15aEsuBft76_15aEctocarpus subulatus male Bft15bgeneScaffold_627 142553..143301 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_15a-0001-exonagat-exon-72002Ectocarpus subulatus male Bft15bexonScaffold_627 142553..142566 +
EsuBft76_15a-0001-exonEsuBft76_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 142771..143301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_15a-0001-cdsEsuBft76_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 142553..142566 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_15a-0001-exonagat-three_prime_utr-21270Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 142859..143301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_15a-0001EsuBft76_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 142553..142858 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft76_15a-0001 ID=EsuBft76_15a-0001|Name=EsuBft76_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=545bp|location=Sequence derived from alignment at Scaffold_627:142553..143301+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCTGCAGTGGCATCGCCTGCGACTGTCTCGGCCCTGGAACGTT
CCTGGCTGCGCTTATAGGCAAGCGGCGTCTTTGCCGCACATCCTACTGCT
AACCCGCTGGGGCGGGTCGCTCGTTTTTGTGTATTTGTGCCGTGTTGCCC
ATGGTCTGTGGGAACGTGTGTATGCATTTTGCACGAATCAAATGTCTTCC
TGTTTATGTATACAGTGGTGGCTACGGTTTAACAGAGATAAGTTAAGAAA
AATGGGACGGGTTAAGAGAGTAAAACTGGCTTGTCACGCCTCTGGCCGTC
ATAAGAGAGAAATTACCATCCTCCAGTCGTATTGTTGTTGTTGTTTTTCT
TCACATTGAACTCGTGTCAGTTGCTAATCCCAACATCTAGCAAAGACTCG
GTCCGTGGTCACAAAAATGCTAGAGCCATCAGAAGATCTAAAGAACATGC
ACACTATTAGCAAGAAAAGGGCACACAAGCCCGAGGAGGTACACCTGCAA
TCCCTGCAGCACGTTTACGTGCTCACAACTGAACTACACGCCCAC
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protein sequence of EsuBft76_15a-0001

>EsuBft76_15 ID=EsuBft76_15|Name=EsuBft76_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=33bp
MKACSGIACDCLGPGTFLAALIGKRRLCRTSYC
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mRNA from alignment at Scaffold_627:142553..143301+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft76_15a-0001 ID=EsuBft76_15a-0001|Name=EsuBft76_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=749bp|location=Sequence derived from alignment at Scaffold_627:142553..143301+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCTGCAGGTAAACGACCTTCCTCGCGACAACATTGGAAATCGC
GTCATGCTCCCATCATATCCATTTTCTAACAGGGTAACATGGGTGAGAGG
ACACCGAATGACGCACAATCCCGGGTCATGCGCGATTGGTCGGTTCGTTT
GTGCTGTTTGCCTCGTTTATGACAGAAGCATGAATTGGTTGGCAAAGATC
TACCCCAAAAGCATTCAGTGGCATCGCCTGCGACTGTCTCGGCCCTGGAA
CGTTCCTGGCTGCGCTTATAGGCAAGCGGCGTCTTTGCCGCACATCCTAC
TGCTAACCCGCTGGGGCGGGTCGCTCGTTTTTGTGTATTTGTGCCGTGTT
GCCCATGGTCTGTGGGAACGTGTGTATGCATTTTGCACGAATCAAATGTC
TTCCTGTTTATGTATACAGTGGTGGCTACGGTTTAACAGAGATAAGTTAA
GAAAAATGGGACGGGTTAAGAGAGTAAAACTGGCTTGTCACGCCTCTGGC
CGTCATAAGAGAGAAATTACCATCCTCCAGTCGTATTGTTGTTGTTGTTT
TTCTTCACATTGAACTCGTGTCAGTTGCTAATCCCAACATCTAGCAAAGA
CTCGGTCCGTGGTCACAAAAATGCTAGAGCCATCAGAAGATCTAAAGAAC
ATGCACACTATTAGCAAGAAAAGGGCACACAAGCCCGAGGAGGTACACCT
GCAATCCCTGCAGCACGTTTACGTGCTCACAACTGAACTACACGCCCAC
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Coding sequence (CDS) from alignment at Scaffold_627:142553..143301+

>EsuBft76_15a-0001 ID=EsuBft76_15a-0001|Name=EsuBft76_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=102bp|location=Sequence derived from alignment at Scaffold_627:142553..143301+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCTGCAGTGGCATCGCCTGCGACTGTCTCGGCCCTGGAACGTT
CCTGGCTGCGCTTATAGGCAAGCGGCGTCTTTGCCGCACATCCTACTGCT
AA
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