EsuBft76_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft76_14a-0001
Unique NameEsuBft76_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:164242..165852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000001034
ProteomeIdEsuBft76_14
Protein domainsIPR005135
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl33208|Metazoa
Length147
Hectar predicted targeting categoryother localisation
Evalue5.96e-05
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3AB3G@33154|Opisthokonta,3BUJA@33208|Metazoa,3DD87@33213|Bilateria,48QSY@7711|Chordata,49G6V@7742|Vertebrata
Date last modified2016-06-14
Date creation2016-06-14
DescriptionEndonuclease-reverse transcriptase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft76_14aEsuBft76_14aEctocarpus subulatus male Bft15bgeneScaffold_627 164242..165852 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_14a-0001-exonagat-exon-72001Ectocarpus subulatus male Bft15bexonScaffold_627 164242..164535 +
EsuBft76_14a-0001-exonEsuBft76_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 164600..164815 +
EsuBft76_14a-0001-exonagat-exon-72000Ectocarpus subulatus male Bft15bexonScaffold_627 164888..165852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_14a-0001-cdsEsuBft76_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 164242..164535 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_14a-0001-exonagat-three_prime_utr-21269Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 165140..165852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_14a-0001EsuBft76_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 164242..165139 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft76_14a-0001 ID=EsuBft76_14a-0001|Name=EsuBft76_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1475bp|location=Sequence derived from alignment at Scaffold_627:164242..165852+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAGCCGGGAGGATGGAAGCAGAAATTGTGGAAGGGAGACAAGTT
GGAGCTGCTGCTGTTTGGGATTCCAAGGGACGTGACGAGGATAGAGTTCA
AGAACTGTTGTGATAGGGAGGGACTGCACTGCCTAGGAAGGGGACAAGTA
GGCAGAGAACATGAACACTTCCGGGTGAAATTGACCAAGGGAGACAGCCA
AGAGTGCTTGGGGGTTGACATCGAGAAGCTGTCGAACTACGTGAGGAAGT
TTGGATGGAGGGTTAGCATCGCGAACATGATAGAAACAGAGAAGGCAAGT
CAAAACAAGTCCGAGAAGAAGCGGAAGGCGAGCGATAGAGTGCGCAAAAT
CTCCAATAGGGAAAAGCACAAGCTGAGAGTCGGGTCGTGGAACGTGTGTG
GGTTCGCAAGGAGTGAGCGCAAGCGGTTGGAAATATTGGACCAAGTAGAA
CAAGGCGATCTAGATGAAGTGGGGATCCAAGAGACGTGGGAATTGAAGGA
TTGGAACGTGGGGGGAGTCGGATTCCTGGTCAAGGAACACTTGTTTGACG
TGGTGGAAGTAGTGGTGAAAACGGAGTTCGAGGAAAGCCTATGGAGTAAG
ATGCCTGGGGAGCGGGGTGAGACAGATTTGTTTCTAGGGAATGTGTACGT
CCCACCGTCGTCGAAGAAAGTCGCAAGCAAGGCGCAGGAGAACTTTGGAC
AAATTGGGGAAGATGTCCAGAGCTTCAGTAGGAGGGAGAAGTTGTCATGG
TGGGCGATTTGAACTCCAGAGTAAGGAAAGCTTCAAATAGAGGACAGACG
ATATATATAGGTTCGACTGACCACTTCCTCATATGGGTAAACATCGATCG
ATCCAGAAAGATGGAAAGTAAGAGACAGAGGAAAGTGTTCCGGTGGAAAG
CAGAGCGTTTGGGAGACGAGGGGACATGGGATGAATTCCAGAAGGGACTG
GCTGGTAGTTTAGAATCCTTCGGGAAACTGCTGAGAAGCGTCGAAGACGA
ACAGGTAGACGTACAAGCAGCACGGGACAGGGTGATTGATGGGTGCGAGT
CCATCGTGAACGCAACGGCAGAAAAGGAGTGGGAAGGAAGGTGGTACGAT
ATGGGGTATCGGTTAAGTGGTGGGATGACGAGCTGAAAGAAGAAATGGGG
GAACGTAAAGAAGTCTAAGCAGTGCGTGAGTGATGCGTCTGAGGAGAGTT
GGGAAAAGTACAGGGCCAAGGAAAAACAGTCAACCTGAATCCTTGAGAAT
TATTCACAAGAGAGCCATATCCTTTGCGTTCACCCCCTAGAGTAGCCTCT
CAAGGGTGTGAGGGCAAAGCTAGGTCCCTTAGCCCCTATAGAACGGGGTA
GAATGAAAGACAAGAGAAGAGAGCATATCATGTTCAGCCGTCATCAGAGG
CCTACGGGATGGGACAAGAAGGGGGTAACATTAACATCTCCACCAACCAT
GTTTAGGCTCCCAGCAGAGCCCCGT
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protein sequence of EsuBft76_14a-0001

>EsuBft76_14 ID=EsuBft76_14|Name=EsuBft76_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=253bp
MKKPGGWKQKLWKGDKLELLLFGIPRDVTRIEFKNCCDREGLHCLGRGQV
GREHEHFRVKLTKGDSQECLGVDIEKLSNYVRKFGWRVSIANMIETEKAS
QNKSEKKRKASDRVRKISNREKHKLRVGSWNVCGFARSERKRLEILDQVE
QGDLDEVGIQETWELKDWNVGGVGFLVKEHLFDVVEVVVKTEFEESLWSK
MPGERGETDLFLGNVYVPPSSKKVASKAQENFGQIGEDVQSFSRREKLSW
WAI
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mRNA from alignment at Scaffold_627:164242..165852+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft76_14a-0001 ID=EsuBft76_14a-0001|Name=EsuBft76_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1611bp|location=Sequence derived from alignment at Scaffold_627:164242..165852+ (Ectocarpus subulatus male Bft15b)
ATGAAGAAGCCGGGAGGATGGAAGCAGAAATTGTGGAAGGGAGACAAGTT
GGAGCTGCTGCTGTTTGGGATTCCAAGGGACGTGACGAGGATAGAGTTCA
AGAACTGTTGTGATAGGGAGGGACTGCACTGCCTAGGAAGGGGACAAGTA
GGCAGAGAACATGAACACTTCCGGGTGAAATTGACCAAGGGAGACAGCCA
AGAGTGCTTGGGGGTTGACATCGAGAAGCTGTCGAACTACGTGAGGAAGT
TTGGATGGAGGGTTAGCATCGCGAACATGATAGAAACAGAGAAGGTAAGG
AGACAAGAGGCGAGGGCGACGGAGGCGAAAAAAAGGACCGAGCGGGGAAG
GTGAGCAGGCAAGTCAAAACAAGTCCGAGAAGAAGCGGAAGGCGAGCGAT
AGAGTGCGCAAAATCTCCAATAGGGAAAAGCACAAGCTGAGAGTCGGGTC
GTGGAACGTGTGTGGGTTCGCAAGGAGTGAGCGCAAGCGGTTGGAAATAT
TGGACCAAGTAGAACAAGGCGATCTAGATGAAGTGGGGATCCAAGAGACG
TGGGAATTGAAGGATTGGAACGTGGTAAGCAAACTAGGGAACTACCGGTG
GGTAGGGAAGGCAAGAAAAGGCTTAGACCCGAAGAAAAAGGGGTAGGGGG
GAGTCGGATTCCTGGTCAAGGAACACTTGTTTGACGTGGTGGAAGTAGTG
GTGAAAACGGAGTTCGAGGAAAGCCTATGGAGTAAGATGCCTGGGGAGCG
GGGTGAGACAGATTTGTTTCTAGGGAATGTGTACGTCCCACCGTCGTCGA
AGAAAGTCGCAAGCAAGGCGCAGGAGAACTTTGGACAAATTGGGGAAGAT
GTCCAGAGCTTCAGTAGGAGGGAGAAGTTGTCATGGTGGGCGATTTGAAC
TCCAGAGTAAGGAAAGCTTCAAATAGAGGACAGACGATATATATAGGTTC
GACTGACCACTTCCTCATATGGGTAAACATCGATCGATCCAGAAAGATGG
AAAGTAAGAGACAGAGGAAAGTGTTCCGGTGGAAAGCAGAGCGTTTGGGA
GACGAGGGGACATGGGATGAATTCCAGAAGGGACTGGCTGGTAGTTTAGA
ATCCTTCGGGAAACTGCTGAGAAGCGTCGAAGACGAACAGGTAGACGTAC
AAGCAGCACGGGACAGGGTGATTGATGGGTGCGAGTCCATCGTGAACGCA
ACGGCAGAAAAGGAGTGGGAAGGAAGGTGGTACGATATGGGGTATCGGTT
AAGTGGTGGGATGACGAGCTGAAAGAAGAAATGGGGGAACGTAAAGAAGT
CTAAGCAGTGCGTGAGTGATGCGTCTGAGGAGAGTTGGGAAAAGTACAGG
GCCAAGGAAAAACAGTCAACCTGAATCCTTGAGAATTATTCACAAGAGAG
CCATATCCTTTGCGTTCACCCCCTAGAGTAGCCTCTCAAGGGTGTGAGGG
CAAAGCTAGGTCCCTTAGCCCCTATAGAACGGGGTAGAATGAAAGACAAG
AGAAGAGAGCATATCATGTTCAGCCGTCATCAGAGGCCTACGGGATGGGA
CAAGAAGGGGGTAACATTAACATCTCCACCAACCATGTTTAGGCTCCCAG
CAGAGCCCCGT
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Coding sequence (CDS) from alignment at Scaffold_627:164242..165852+

>EsuBft76_14a-0001 ID=EsuBft76_14a-0001|Name=EsuBft76_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=762bp|location=Sequence derived from alignment at Scaffold_627:164242..165852+ (Ectocarpus subulatus male Bft15b)
ATGAAGAAGCCGGGAGGATGGAAGCAGAAATTGTGGAAGGGAGACAAGTT
GGAGCTGCTGCTGTTTGGGATTCCAAGGGACGTGACGAGGATAGAGTTCA
AGAACTGTTGTGATAGGGAGGGACTGCACTGCCTAGGAAGGGGACAAGTA
GGCAGAGAACATGAACACTTCCGGGTGAAATTGACCAAGGGAGACAGCCA
AGAGTGCTTGGGGGTTGACATCGAGAAGCTGTCGAACTACGTGAGGAAGT
TTGGATGGAGGGTTAGCATCGCGAACATGATAGAAACAGAGAAGGCAAGT
CAAAACAAGTCCGAGAAGAAGCGGAAGGCGAGCGATAGAGTGCGCAAAAT
CTCCAATAGGGAAAAGCACAAGCTGAGAGTCGGGTCGTGGAACGTGTGTG
GGTTCGCAAGGAGTGAGCGCAAGCGGTTGGAAATATTGGACCAAGTAGAA
CAAGGCGATCTAGATGAAGTGGGGATCCAAGAGACGTGGGAATTGAAGGA
TTGGAACGTGGGGGGAGTCGGATTCCTGGTCAAGGAACACTTGTTTGACG
TGGTGGAAGTAGTGGTGAAAACGGAGTTCGAGGAAAGCCTATGGAGTAAG
ATGCCTGGGGAGCGGGGTGAGACAGATTTGTTTCTAGGGAATGTGTACGT
CCCACCGTCGTCGAAGAAAGTCGCAAGCAAGGCGCAGGAGAACTTTGGAC
AAATTGGGGAAGATGTCCAGAGCTTCAGTAGGAGGGAGAAGTTGTCATGG
TGGGCGATTTGA
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