EsuBft76_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft76_13a-0001
Unique NameEsuBft76_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:170378..170798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft76_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length42
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft76_13aEsuBft76_13aEctocarpus subulatus male Bft15bgeneScaffold_627 170378..170798 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_13a-0001-exonEsuBft76_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 170378..170798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_13a-0001-cdsEsuBft76_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 170378..170587 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_13a-0001-exonagat-five_prime_utr-13704Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_627 170588..170798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_13a-0001EsuBft76_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 170378..170587 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft76_13a-0001 ID=EsuBft76_13a-0001|Name=EsuBft76_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=421bp|location=Sequence derived from alignment at Scaffold_627:170378..170798- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGCTGTCCATCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTAG
GGTTCTTGGTCTGAATATTCTCGCGCCGGAGGGTAAACCAGCCCAATCAG
CTCGTGACCACCTGTCCCCTCCTCCTTTGATGGCAAAACCAGGCAACTGA
GACGGTACAGCTCCCTCTAGCAAACCTAGGGTCGTGTACATAGTGCCCGT
CCACCTTTCTGATGACGTCTGCCTCCTCGCACAAAGATGAGGTAGGCATT
GCTGCCTACATCGACGGTCGTGGAGGTCCGCGCATGTGCACCATTGTATC
CGGCGCACCAGTGCCGACCCAACTCCACCACTACGCACGCCTCGCGGCGG
GTGCGCCGCAGCAAGAAGGTGCTGGTCCCTTAAGGGTGAGTCTAGCCCTG
CTCGCTGTGGGCCATGCCTAA
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protein sequence of EsuBft76_13a-0001

>EsuBft76_13 ID=EsuBft76_13|Name=EsuBft76_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=69bp
MTSASSHKDEVGIAAYIDGRGGPRMCTIVSGAPVPTQLHHYARLAAGAPQ
QEGAGPLRVSLALLAVGHA
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mRNA from alignment at Scaffold_627:170378..170798-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft76_13a-0001 ID=EsuBft76_13a-0001|Name=EsuBft76_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=421bp|location=Sequence derived from alignment at Scaffold_627:170378..170798- (Ectocarpus subulatus male Bft15b)
GTTGCTGTCCATCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTAG
GGTTCTTGGTCTGAATATTCTCGCGCCGGAGGGTAAACCAGCCCAATCAG
CTCGTGACCACCTGTCCCCTCCTCCTTTGATGGCAAAACCAGGCAACTGA
GACGGTACAGCTCCCTCTAGCAAACCTAGGGTCGTGTACATAGTGCCCGT
CCACCTTTCTGATGACGTCTGCCTCCTCGCACAAAGATGAGGTAGGCATT
GCTGCCTACATCGACGGTCGTGGAGGTCCGCGCATGTGCACCATTGTATC
CGGCGCACCAGTGCCGACCCAACTCCACCACTACGCACGCCTCGCGGCGG
GTGCGCCGCAGCAAGAAGGTGCTGGTCCCTTAAGGGTGAGTCTAGCCCTG
CTCGCTGTGGGCCATGCCTAA
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Coding sequence (CDS) from alignment at Scaffold_627:170378..170798-

>EsuBft76_13a-0001 ID=EsuBft76_13a-0001|Name=EsuBft76_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_627:170378..170798- (Ectocarpus subulatus male Bft15b)
ATGACGTCTGCCTCCTCGCACAAAGATGAGGTAGGCATTGCTGCCTACAT
CGACGGTCGTGGAGGTCCGCGCATGTGCACCATTGTATCCGGCGCACCAG
TGCCGACCCAACTCCACCACTACGCACGCCTCGCGGCGGGTGCGCCGCAG
CAAGAAGGTGCTGGTCCCTTAAGGGTGAGTCTAGCCCTGCTCGCTGTGGG
CCATGCCTAA
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