EsuBft76_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft76_12a-0001
Unique NameEsuBft76_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:174423..176984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft76_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length178
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft76_12aEsuBft76_12aEctocarpus subulatus male Bft15bgeneScaffold_627 174423..176984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_12a-0001EsuBft76_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 176151..176984 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_12a-0001-exonEsuBft76_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 174423..175212 -
EsuBft76_12a-0001-exonagat-exon-71999Ectocarpus subulatus male Bft15bexonScaffold_627 175431..176174 -
EsuBft76_12a-0001-exonagat-exon-71998Ectocarpus subulatus male Bft15bexonScaffold_627 176367..176552 -
EsuBft76_12a-0001-exonagat-exon-71997Ectocarpus subulatus male Bft15bexonScaffold_627 176919..176984 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_12a-0001-exonagat-three_prime_utr-21267Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 174423..175212 -
EsuBft76_12a-0001-exonagat-three_prime_utr-21268Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 175431..176150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft76_12a-0001-cdsEsuBft76_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 176151..176174 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft76_12a-0001 ID=EsuBft76_12a-0001|Name=EsuBft76_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1786bp|location=Sequence derived from alignment at Scaffold_627:174423..176984- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGGTAGAGCGGCGCGCACCGCATTTTCAACTTTGGCGTCGTCCAC
AGGCGTCGAATGGAAGGGGGAGTTGAAAATCGAGGTGATCGTGGACATTT
CAGTAACGGAAGATGGGCTTGGCTTTGATGCGGAGGTGATATGGGTTGCT
CTCGACAAGGAAAAGAACGCCTGGGAAGAGCTCTCAAAGATCTGGGATGC
CGCGCCGCAGTTTAGGGAATCCAAGCTGCGGCGGCTGGGTCTGCCGAAAG
AGGTCACCGTCGGCCGCATTGCCTAGTGTTGGGGGGTGCCTCGGCTGGTC
CGGTGGTTGCATGTAGTTGATTGAGTCGACCTACATGACGGCCGCCTTCT
GAATTGTGGTGGTGGTATTCCTTCTCGGACTACGTACGTTTTGAGTTTCT
CGACAATTGCCTATTCGACGATTCTGCGGATCGAGGCAACATGTAAGTTT
CCTTAGATATTTTAACTCCACCCCGGAACTGCCTTCTAACCGCTTTCAGC
GTTGCTTCGTGGTTTGTTGTTTCTCTCATCGTTTTCCCCGCTTGTAGCAA
ACATGCCCATTTCAAGTTGTTTGTAACATACCGGTTGTCCAGCTACTCGG
TATGTTTTTTTCTTGTACGAGCGTGCGGTCTGAGCCAAACTGGTTTCATG
GTCATTTGCGTGTTGTAGTCATTTGTAGCGTCGCGTGCCTTTCACTATTG
TATGCGGGCATTCGACGCTATGTATGGGAGGTCAATCCGTGCGCTGACTC
GTGGCATCGATCCGGCATGGTATCGCCGTGTATGGGTGTTTATCATTCAC
AAACACCGCTGTCGTTTTTGTTGAGCATGGCCAGGTACCCTACTATCTGG
TATTAAGCTAATTCTTGTCTACTCCGGTAGTCGTAAGCTTTGGGAGTATT
GGGGACGCAGCGGACTTGGGTAGCAGTAGTTCACGGTGGGAAACCACCAA
TCGAATATCTGCATGTCTAAAATATGATAGGGTTTCTTTCTGTCTGCCAT
GGCTGTCTGGTGTCTGTCTGCGCGCCCTAAATACCCAGCAGACTCGAGCC
CATTTCACCATCTCGGCACCAAATTGCAAACTAAAACTTGCGCACAACAT
GTAATATTTTGCCCGAGCTGTCCCAACCGCTACCTTTGCAATCCGTGGTC
GGTGTCTCGAGATAGCACACCGTTTGTGCAAACATATATGTCACATGGAC
GCATCCCCGGGAGGCGTCGTCATTTTTGTTTTTCTCTGGGCAACAAACTA
CACGCACGCAAGAAACCACGACGCACTGCCGTGCTGCGCACATTGCTGCT
GCAACTGACAAGACACGCACTACACAGAGACAGGGAACATGAACAAGGGG
GGCGGGACACACACACATACTGCTGTTGGCGACGGCGGAGGAAGCGGGGA
ACGTTTGGTTGGTCTGGGGTTCATTCATCGCTGATGATCTTGTTGCTGTT
GTCTCCGTTGTTTATTGTTGTTGTTCAACGCTGCCGGCCTTTTTGTCGCC
TTTTTTTCTCTGGAGAGAGAGGGAGTCCCACCAACCAGCGTGTGTTGCAC
ACACCACACAGCGAGAGCGGGACGGGAGCAGGGTGTGCCCTATACTACTG
CTGCTGCTAGCTTTCGGCGGAGGAAGCGAGAGGAGAGATATTGATTGGGT
CTCTGTGGGTCCATCGGTTGGTTGTTTTTGTGTTGCGACGCGGCGGGAGG
GAGCGGCCTCTGACTCTGCTCTGGAGAGAGGCACACATACATCACAGCAC
GGGACCAGTAAAACATCACGCTCGTTCCTAGACGAT
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protein sequence of EsuBft76_12a-0001

>EsuBft76_12 ID=EsuBft76_12|Name=EsuBft76_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=91bp
MLGRAARTAFSTLASSTGVEWKGELKIEVIVDISVTEDGLGFDAEVIWVA
LDKEKNAWEELSKIWDAAPQFRESKLRRLGLPKEVTVGRIA
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mRNA from alignment at Scaffold_627:174423..176984-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft76_12a-0001 ID=EsuBft76_12a-0001|Name=EsuBft76_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2562bp|location=Sequence derived from alignment at Scaffold_627:174423..176984- (Ectocarpus subulatus male Bft15b)
ATGCTTGGTAGAGCGGCGCGCACCGCATTTTCAACTTTGGCGTCGTCCAC
AGGCGTCGAATGGAAGGTGAAGTCACGGGAAGGCTCTGCGGGTAAAGGTG
CAGCGTGTCGTCGAGGTCAAACGTCAACTGCACAAGGAAGTTCTGGACAA
GGTGTAGGCGAGTCGGAGTAAGCACCAAGCATCTTGCGCGTTTCGGGAAT
CGCCCTGACTTCACGGTGGGGGGCTACGAGTTGGGAAAGCGCGGTCGCCG
GCGTGAACTGGACGGAGCCGTGGAGGATTGTCGCCACCGAAAGACCGCAT
GTGTACGGAGTTCAGAAAATCGTGTCGGATGACGTTCGGGATGTTCATAT
CGCGCGCTTGCGGTTCTACGCCGATACCGCTCTCGAAATCACGGCCGAGT
TAAAGGAGGTTTTTCAGCATGCTTTCACGCAGGGGGAGTTGAAAATCGAG
GTGATCGTGGACATTTCAGTAACGGAAGATGGGCTTGGCTTTGATGCGGA
GGTGATATGGGTTGCTCTCGACAAGGAAAAGAACGCCTGGGAAGAGCTCT
CAAAGATCTGGGATGCCGCGCCGCAGTTTAGGGAATCCAAGCTGCGGCGG
CTGGGTCTGCCGAAAGAGGTTCGGGCTCGATGAAAGCAGCAATACGGCAT
GGCCTTGTGATTTATCCGTCTACGTTGAACGAGGGCCGTCTTGTTTGCGT
ATTGATGGCACTTCGTCGCTGACATCCTTCGCAACTGTGCTTGATTTGTT
TGGGTCGAATAGAAATTTGGCAGTGGTTATGGCATGCCTGACTCTTGTAT
GGGTTTGCAGGTCACCGTCGGCCGCATTGCCTAGTGTTGGGGGGTGCCTC
GGCTGGTCCGGTGGTTGCATGTAGTTGATTGAGTCGACCTACATGACGGC
CGCCTTCTGAATTGTGGTGGTGGTATTCCTTCTCGGACTACGTACGTTTT
GAGTTTCTCGACAATTGCCTATTCGACGATTCTGCGGATCGAGGCAACAT
GTAAGTTTCCTTAGATATTTTAACTCCACCCCGGAACTGCCTTCTAACCG
CTTTCAGCGTTGCTTCGTGGTTTGTTGTTTCTCTCATCGTTTTCCCCGCT
TGTAGCAAACATGCCCATTTCAAGTTGTTTGTAACATACCGGTTGTCCAG
CTACTCGGTATGTTTTTTTCTTGTACGAGCGTGCGGTCTGAGCCAAACTG
GTTTCATGGTCATTTGCGTGTTGTAGTCATTTGTAGCGTCGCGTGCCTTT
CACTATTGTATGCGGGCATTCGACGCTATGTATGGGAGGTCAATCCGTGC
GCTGACTCGTGGCATCGATCCGGCATGGTATCGCCGTGTATGGGTGTTTA
TCATTCACAAACACCGCTGTCGTTTTTGTTGAGCATGGCCAGGTACCCTA
CTATCTGGTATTAAGCTAATTCTTGTCTACTCCGGTAGTCGTAAGCTTTG
GGAGTATTGGGGACGCAGCGGACTTGGGTAGCAGTAGTTCACGGTGGGAA
ACCACCAATCGAATATCTGCATGTCTAAAATATGATAGGGTTTCTTTCTG
TCTGGTTGGCATGCTAGTGGGAACGAGAGAATAATGGATAGGTAGAGTGA
GCGAGAGATTCGTGTCAAATGATAATAGTTTTTTTTTTTTAAAGTGTGGC
CCGTTAGGGGTGCGCTTTTTGTTTTGTTTTGCAAAAAAAAAAGCTGTTTA
GAGGGATCGAGGGTGGAGTATGTGCGCACGAGAAAAAGAATAATTTTCAT
GCACAGGGGCGTGAAAATTTAGCCATGGCTGTCTGGTGTCTGTCTGCGCG
CCCTAAATACCCAGCAGACTCGAGCCCATTTCACCATCTCGGCACCAAAT
TGCAAACTAAAACTTGCGCACAACATGTAATATTTTGCCCGAGCTGTCCC
AACCGCTACCTTTGCAATCCGTGGTCGGTGTCTCGAGATAGCACACCGTT
TGTGCAAACATATATGTCACATGGACGCATCCCCGGGAGGCGTCGTCATT
TTTGTTTTTCTCTGGGCAACAAACTACACGCACGCAAGAAACCACGACGC
ACTGCCGTGCTGCGCACATTGCTGCTGCAACTGACAAGACACGCACTACA
CAGAGACAGGGAACATGAACAAGGGGGGCGGGACACACACACATACTGCT
GTTGGCGACGGCGGAGGAAGCGGGGAACGTTTGGTTGGTCTGGGGTTCAT
TCATCGCTGATGATCTTGTTGCTGTTGTCTCCGTTGTTTATTGTTGTTGT
TCAACGCTGCCGGCCTTTTTGTCGCCTTTTTTTCTCTGGAGAGAGAGGGA
GTCCCACCAACCAGCGTGTGTTGCACACACCACACAGCGAGAGCGGGACG
GGAGCAGGGTGTGCCCTATACTACTGCTGCTGCTAGCTTTCGGCGGAGGA
AGCGAGAGGAGAGATATTGATTGGGTCTCTGTGGGTCCATCGGTTGGTTG
TTTTTGTGTTGCGACGCGGCGGGAGGGAGCGGCCTCTGACTCTGCTCTGG
AGAGAGGCACACATACATCACAGCACGGGACCAGTAAAACATCACGCTCG
TTCCTAGACGAT
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Coding sequence (CDS) from alignment at Scaffold_627:174423..176984-

>EsuBft76_12a-0001 ID=EsuBft76_12a-0001|Name=EsuBft76_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=276bp|location=Sequence derived from alignment at Scaffold_627:174423..176984- (Ectocarpus subulatus male Bft15b)
ATGCTTGGTAGAGCGGCGCGCACCGCATTTTCAACTTTGGCGTCGTCCAC
AGGCGTCGAATGGAAGGGGGAGTTGAAAATCGAGGTGATCGTGGACATTT
CAGTAACGGAAGATGGGCTTGGCTTTGATGCGGAGGTGATATGGGTTGCT
CTCGACAAGGAAAAGAACGCCTGGGAAGAGCTCTCAAAGATCTGGGATGC
CGCGCCGCAGTTTAGGGAATCCAAGCTGCGGCGGCTGGGTCTGCCGAAAG
AGGTCACCGTCGGCCGCATTGCCTAG
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