EsuBft76_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft76_11a-0001
Unique Name	EsuBft76_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_627	contig	Scaffold_627:177802..181187 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft76_11
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	315
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft76_11a	EsuBft76_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_627 177802..181187 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft76_11a-0001	EsuBft76_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_627 177802..178097 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft76_11a-0001-exon	agat-exon-71995	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 177802..177819 +
EsuBft76_11a-0001-exon	agat-exon-71996	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 177987..180852 +
EsuBft76_11a-0001-exon	EsuBft76_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 180922..181187 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft76_11a-0001-cds	EsuBft76_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_627 177802..177819 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft76_11a-0001-exon	agat-three_prime_utr-21265	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_627 178098..180852 +
EsuBft76_11a-0001-exon	agat-three_prime_utr-21266	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_627 180922..181187 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_627:177802..181187+
coding sequence from alignment at Scaffold_627:177802..181187+

spliced messenger RNA

>EsuBft76_11a-0001 ID=EsuBft76_11a-0001|Name=EsuBft76_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3150bp|location=Sequence derived from alignment at Scaffold_627:177802..181187+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTTGTGTATCACCTTCCGGCTGGTCAAGGCGCTGGGCCGTTGTT
TATTACTTCCAACTACGGAATACACGCAAGCGTCCGGATCGAACTTGTAA
GAATGGACGGGGCTCTGCTGGGAGCCTAAACATGGTTGGTGGAGATGTTA
ATGTTACCCCCTTCTTGTCCCATCCCGTAGGCCTCTGATGACGGCTGAAC
ATGATATGCTCTCTTCTCTTGTCTTTCATTCTACCCCGTTCTATAGGGGC
TAAGGGACCTAGCTTTGCCCTCACACCCTTGAGAGGCTACTCTAGGGGGT
GAACGCAAAGGATATGGCTCTCTTGTGAATAATTCTCAAGGATTCAGGTT
GACTGTTTTTCCTTGGCCCTGTACTTTTCCCAACTCTCCTCAGACGCATC
ACTCACGCACTGCTTAGACTTCTTTACGTTCCCCCATTTCTTCTTTCAGC
TCGTCATCCCACCACTTAACCGATACCCCATATCGTACCACCTTCCTTCC
CACTCCTGTTCTGCCGTTGCGTTCACGATGGACTCGCACCCATCAATCAC
CCTGTCCCGTGCTGCTTGTACGTCTACCTGTTCGTCTTCGACGCTTCTCA
GCAGTTTCCCGAAGGATTCTAAACTACCAGCCAGTCCCTTCTGGAATTCA
TCCCATGTCCCCTCGTCTCCCAAACGCTCTGCTTTCCACCGGAACACTTT
CCTCTGTCTCTTACTTTCCATCTTTCTGGATCGATCGATGTTTACCCATA
TGAGGAAGTGGTCAGTCGAACCTATATATATCGTCTGTCCTCTATTTGAA
GCTTTCCTTACTCTGGAGTTCAAATCGCCCACCATGACAACTTCTCCCTC
CTACTGAAGCTCTGGACATCTTCCCCAATTTGTCCAAAGTTCTCCTGCGC
CTTGCTTGCGACTTTCTTCGACGACGGTGGGACGTACACATTCCCTAGAA
ACAAATCTGTCTCACCCCGCTCCCCAGGCATCTTACTCCATAGGCTTTCC
TCGAACTCCGTTTTCACCACTACTTCCACCACGTCAAACAAGTGTTCCTT
GACCAGGAATCCGACTCCCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTC
AGTTCTTTTGCCGGCTCACCGACGTTAAATAGCGCCTCCAACATAGGCTC
GTAGTTTAGCTCCAAGTTCATCCCCCCTGACACAAGTACCCCAGTCTTGT
GCCGGGCGCTCTGCTTAGTTAACACCCAGACGTCCCCCGACCATCCAATT
GATCATCTCCGAAGTCCCGCGGTAGAAGCTACTTTTCTTCTGGGAGGTCA
TTTTCACCACAATGAGTTCAGGGACGACTTGCTAGCCTAAGATCCTAATC
ACATGCCGGGATGGAGCGTACACCATCGCCCAGCTTCTCATGTACGCTCC
ACCACGGGTTGCTACCCCGCTTACGCTCCCGAGTAGACCTATCTGCCGAA
AGTTTGGCCAACAATTCCTTACTGCTTTATACTCGCCTCTCTCCAATCGA
AAACAATGCATTGTGCGTGCCGCACATCTAGCTCCGCAGTTTTTGCGTGG
TTGGTCCGGTCATTCAGCTTGCTCGACGTGAGAAATATGCTTTGCTTTGA
TGGCTCTATGTTTTGTCGATCCACTTCAAGCAACGAANCACTTTCCAACC
GAAAATAATGCATTGTGCGTGCCGCACATCTAGCTCCGCAGTTTTTGCGT
GGTTGGTCCGGTCATTCAGCTTGCTCGACGTGAGAAATATGCTTTGCTTT
GATGGCTCTATGTTTTGTCGATCCACTTCAAGCAACGAACTTCCCCCCCC
CCTCTCCACCGTCCGATCCATTTTGGATCTCACGCCGGAGAGTTTTGGGG
TGTCTTGGGTCTTCAGTCCTCCACCGCCCAATGGGGGACTCAAGTATTTA
TTTCTGCCGAAAAAATAGGCATGAATTTTGGTAAAGCTTGTGCTTACTTT
GGACTGTACCCTCCTTATCCTCTGGGGGAGGTAGAGATGGTGGGGGGCTT
ATGGCCTCTATTTTTCAGGGGGGGTTCATGTGCTGGTTGGGGGTCGGTTC
TATGTGTTCTGCATCCTTGAATTGTCCCCCCACTATAGCTACTGTGGATT
TTGAGCGTACAGCTATCCTTACTCAACGCGTATGTGTCCGGCAATCTCCA
ATACAAATCAACCTGTGAGGTTTCAGTATGCAGCTTTCGTCACTTAATGC
GTCTATGTGTCCGGCAGTCGCAGACGTCACTCAACCCGTTAGGTTCCGAT
ATGCAGCCATCCTCACTCAAAGCGTCTATGTGTCCGGCACTATCCAACAT
CACTCAGCTCGTGAGGCTTTGGTATGTAGCTAACCCCACGCAGAGCGTCT
ATGTGTCTGGCAAACTCAAAAACCAATCCATCTAAGAGCTTTCAGTATGC
AGCTATCCTCACTCAACACGTCTAGGTGTCCGGCAATCTCCAATACAAAT
CAACCTGTGAGGTTTCAGTGTATGTCTTTCCTGACTGAAAGCGTCTATGT
GTCCGGCACCATCCAACATCTCTCAACTCGTGAGGTTTCAGTATGCAGCT
ATCCCCACTCAATTCGTCCATGTGTCTGGCAATCTCAAACCTCACTTATC
CCGTGGGGTGTCAGTATACAGCTATAATCACTCAACACGTCGATGTGTCC
GGCAATCTTCTACATCACTTAACCTGTGAGGTTTCCGAAAGCAATCCTCA
CTCCACGCATCCATGCGTCACGCGTCTTTGATGGCGCATACTATGGGGGC
TATATTTGGGGTGGCGTGTCTTACAGCGCTTTTGCCAACAGCGCCAACCC

protein sequence of EsuBft76_11a-0001

>EsuBft76_11 ID=EsuBft76_11|Name=EsuBft76_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=42bp
MLVVYHLPAGQGAGPLFITSNYGIHASVRIELVRMDGALLGA

mRNA from alignment at Scaffold_627:177802..181187+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft76_11a-0001 ID=EsuBft76_11a-0001|Name=EsuBft76_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3386bp|location=Sequence derived from alignment at Scaffold_627:177802..181187+ (Ectocarpus subulatus male Bft15b)
ATGCTTGTTGTGTATCACGTACGACTCGCTTCGACCCCATAGCGGAATCA
GATTCGCTGGGGGCGTAAACCGCGGCAGCATGAATACTTACCGACGGCAC
AGAAAACGACCTTGAAAGAATGTGTCCCCAGCATTTTCCCTCACCCGAAA
CTGCCTAGTGGTGTAATCGAACTGGCCCAACACAGCTTCCGGCTGGTCAA
GGCGCTGGGCCGTTGTTTATTACTTCCAACTACGGAATACACGCAAGCGT
CCGGATCGAACTTGTAAGAATGGACGGGGCTCTGCTGGGAGCCTAAACAT
GGTTGGTGGAGATGTTAATGTTACCCCCTTCTTGTCCCATCCCGTAGGCC
TCTGATGACGGCTGAACATGATATGCTCTCTTCTCTTGTCTTTCATTCTA
CCCCGTTCTATAGGGGCTAAGGGACCTAGCTTTGCCCTCACACCCTTGAG
AGGCTACTCTAGGGGGTGAACGCAAAGGATATGGCTCTCTTGTGAATAAT
TCTCAAGGATTCAGGTTGACTGTTTTTCCTTGGCCCTGTACTTTTCCCAA
CTCTCCTCAGACGCATCACTCACGCACTGCTTAGACTTCTTTACGTTCCC
CCATTTCTTCTTTCAGCTCGTCATCCCACCACTTAACCGATACCCCATAT
CGTACCACCTTCCTTCCCACTCCTGTTCTGCCGTTGCGTTCACGATGGAC
TCGCACCCATCAATCACCCTGTCCCGTGCTGCTTGTACGTCTACCTGTTC
GTCTTCGACGCTTCTCAGCAGTTTCCCGAAGGATTCTAAACTACCAGCCA
GTCCCTTCTGGAATTCATCCCATGTCCCCTCGTCTCCCAAACGCTCTGCT
TTCCACCGGAACACTTTCCTCTGTCTCTTACTTTCCATCTTTCTGGATCG
ATCGATGTTTACCCATATGAGGAAGTGGTCAGTCGAACCTATATATATCG
TCTGTCCTCTATTTGAAGCTTTCCTTACTCTGGAGTTCAAATCGCCCACC
ATGACAACTTCTCCCTCCTACTGAAGCTCTGGACATCTTCCCCAATTTGT
CCAAAGTTCTCCTGCGCCTTGCTTGCGACTTTCTTCGACGACGGTGGGAC
GTACACATTCCCTAGAAACAAATCTGTCTCACCCCGCTCCCCAGGCATCT
TACTCCATAGGCTTTCCTCGAACTCCGTTTTCACCACTACTTCCACCACG
TCAAACAAGTGTTCCTTGACCAGGAATCCGACTCCCCCCTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCTTTCAGTTCTTTTGCCGGCTCACCGACGTTAAATAGC
GCCTCCAACATAGGCTCGTAGTTTAGCTCCAAGTTCATCCCCCCTGACAC
AAGTACCCCAGTCTTGTGCCGGGCGCTCTGCTTAGTTAACACCCAGACGT
CCCCCGACCATCCAATTGATCATCTCCGAAGTCCCGCGGTAGAAGCTACT
TTTCTTCTGGGAGGTCATTTTCACCACAATGAGTTCAGGGACGACTTGCT
AGCCTAAGATCCTAATCACATGCCGGGATGGAGCGTACACCATCGCCCAG
CTTCTCATGTACGCTCCACCACGGGTTGCTACCCCGCTTACGCTCCCGAG
TAGACCTATCTGCCGAAAGTTTGGCCAACAATTCCTTACTGCTTTATACT
CGCCTCTCTCCAATCGAAAACAATGCATTGTGCGTGCCGCACATCTAGCT
CCGCAGTTTTTGCGTGGTTGGTCCGGTCATTCAGCTTGCTCGACGTGAGA
AATATGCTTTGCTTTGATGGCTCTATGTTTTGTCGATCCACTTCAAGCAA
CGAANCACTTTCCAACCGAAAATAATGCATTGTGCGTGCCGCACATCTAG
CTCCGCAGTTTTTGCGTGGTTGGTCCGGTCATTCAGCTTGCTCGACGTGA
GAAATATGCTTTGCTTTGATGGCTCTATGTTTTGTCGATCCACTTCAAGC
AACGAACTTCCCCCCCCCCTCTCCACCGTCCGATCCATTTTGGATCTCAC
GCCGGAGAGTTTTGGGGTGTCTTGGGTCTTCAGTCCTCCACCGCCCAATG
GGGGACTCAAGTATTTATTTCTGCCGAAAAAATAGGCATGAATTTTGGTA
AAGCTTGTGCTTACTTTGGACTGTACCCTCCTTATCCTCTGGGGGAGGTA
GAGATGGTGGGGGGCTTATGGCCTCTATTTTTCAGGGGGGGTTCATGTGC
TGGTTGGGGGTCGGTTCTATGTGTTCTGCATCCTTGAATTGTCCCCCCAC
TATAGCTACTGTGGATTTTGAGCGTACAGCTATCCTTACTCAACGCGTAT
GTGTCCGGCAATCTCCAATACAAATCAACCTGTGAGGTTTCAGTATGCAG
CTTTCGTCACTTAATGCGTCTATGTGTCCGGCAGTCGCAGACGTCACTCA
ACCCGTTAGGTTCCGATATGCAGCCATCCTCACTCAAAGCGTCTATGTGT
CCGGCACTATCCAACATCACTCAGCTCGTGAGGCTTTGGTATGTAGCTAA
CCCCACGCAGAGCGTCTATGTGTCTGGCAAACTCAAAAACCAATCCATCT
AAGAGCTTTCAGTATGCAGCTATCCTCACTCAACACGTCTAGGTGTCCGG
CAATCTCCAATACAAATCAACCTGTGAGGTTTCAGTGTATGTCTTTCCTG
ACTGAAAGCGTCTATGTGTCCGGCACCATCCAACATCTCTCAACTCGTGA
GGTTTCAGTATGTAGCTATCCCCACTCAAAGCGTCTATGTGTCTGGCAAA
CTCAAAAACCAATCTGTGAGGTTTCAGTATGCAGCTATCCCCACTCAATT
CGTCCATGTGTCTGGCAATCTCAAACCTCACTTATCCCGTGGGGTGTCAG
TATACAGCTATAATCACTCAACACGTCGATGTGTCCGGCAATCTTCTACA
TCACTTAACCTGTGAGGTTTCCGAAAGCAATCCTCACTCCACGCATCCAT
GCGTCACGCGTCTTTGATGGCGCATACTATGGGGGCTATATTTGGGGTGG
CGTGTCTTACAGCGCTTTTGCCAACAGCGCCAACCC

Coding sequence (CDS) from alignment at Scaffold_627:177802..181187+

>EsuBft76_11a-0001 ID=EsuBft76_11a-0001|Name=EsuBft76_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=129bp|location=Sequence derived from alignment at Scaffold_627:177802..181187+ (Ectocarpus subulatus male Bft15b)
ATGCTTGTTGTGTATCACCTTCCGGCTGGTCAAGGCGCTGGGCCGTTGTT
TATTACTTCCAACTACGGAATACACGCAAGCGTCCGGATCGAACTTGTAA
GAATGGACGGGGCTCTGCTGGGAGCCTAA