EsuBft76_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft76_10a-0001
Unique Name	EsuBft76_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_627	contig	Scaffold_627:182001..185150 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft76_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	315
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft76_10a	EsuBft76_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_627 182001..185150 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft76_10a-0001-exon	EsuBft76_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 182001..185150 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft76_10a-0001-exon	agat-five_prime_utr-13703	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_627 182001..182291 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft76_10a-0001-cds	EsuBft76_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_627 182292..182753 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft76_10a-0001-exon	agat-three_prime_utr-21264	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_627 182754..185150 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft76_10a-0001	EsuBft76_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_627 182292..182753 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_627:182001..185150+
coding sequence from alignment at Scaffold_627:182001..185150+

spliced messenger RNA

>EsuBft76_10a-0001 ID=EsuBft76_10a-0001|Name=EsuBft76_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3150bp|location=Sequence derived from alignment at Scaffold_627:182001..185150+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCATCCTTCGCACTGGTCTTCTCCAGAGTGGTCTTCACCGTTATCTCGTG
CTGGACTGACGTCTAATTCACGTTGCCGAGTTCCTCGAAAACCTCCGTCT
CCACAGACGCCGGCTGCTCGGAAGTCAGATCCTTTCCTTTGATGGGGCTC
TCGTCAGGTACCGGCGGGTGGTGCCGAGCTTAGAACTCACCGGCGCGCTT
TACGAGAGCCTCGCACACCTTTATCACCGTCGCCCACGCTTTACCCTCGT
ACCCCTTCGGCAGTTTCCGGCCCACGCTGGTACGCCGGCGGATGCTAAAC
CCATTCCGGCGGAACCGTTGGTACCAGGAGTTAAATTTGACCGTTGAAAG
CCAGCGCCTCCTCCGGTTTCGCGTTCGCCGGCTTCCCGCCAAGGGCGTCA
GGCATCAGCTTGAGCAGGTTGCTGATCACCTCCCGATTACTACAACCGCG
GTGCTGCTTGCGCTGCTCGTTGATGAAGTCCAGAAGGGCTTGTTCGGCGT
CGACTGTCGAAGCTTTCCCTCCACTGTGAACCTGCTTGGCTTTCGAAAGC
TTGGGGTTAATGCTGACCTTCTCCCTGAGCTGCTGCTCCTGCTTCAGCCA
CTCGATGGTACGCTTCCGAGGCACCTGGAGAACTTTGGCCGCGCCGTTGT
TTCCCTTCGGTTGACCGTCGCACGGGCAGATCCCCCGTGGTTAGGCCGCC
GCGTTCAGTTTGGACCAGATGGGGTAGCTCCCTCTCCCTCCCACTGCTCC
TGACCACTGGATCGGGAAGTTGGGCTACGGGTACGCGCGTTTGCCGTTGC
TTCTTTTGACGGGGTCATTGGCGGCTAGCATCTCATCGATAGCCTCGCCG
CTTGCCTTCGGCTCCACAGCGGCAGCTCCCTGATCCGCAGAGGAAGGACC
GCCAGCACTCGCCTGTGAGGCCTGTGAGGCCTGTGAGGCGTCGGCAGGTC
CCGCGCTTGCACCCTCCGACATCGTAGCCGCGCGTTGCGTGTGGTCGAGC
CCGCAGCACCGTCCCGGGCATTTTCCCGATTTTCCGACGGTATTTCTCCG
CCACGGAACTGTTGTGGTGGCAGTTCCCCGAGACTCGTTTGTGGGTGCAG
CTACAAGCTTGTCTGTCGGTTGTGTTGTGATCGTGTTGCAGCAACACCAT
ACACGCAAAGTGCTGCTATCCCCTGTGGTTTTCAATGTTAGGATCGCACA
TATCAGGGTCTTGCCACAGGCGTGTGCGTTCGAAAGTCGCCGTACCAGCC
GCTCTGGAATAAAACGGTACCACACATATCAGGGTCTTGGCACAGGAGTG
TGTGTTGTTTCTTAGAACCAAAATATTTACTGCATTTCCGCACAGGTATC
GCGAACTTGGCACATATCGGGGTCTTCGCACACCTGTGCGAGAAAAATAT
GAAGTTCGAAACATTTGAAAAAGCGACCGCACATTGTGTGTGTTGTGTGT
GTTTTCGTCGTTTTTATTATGGTGACANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCTAAGGTTGTTCGGCAT
CTTGGGCTTACTTCCTCGGATGACAGCTGCATATGACTTAATTTACTTTC
TGGTGCTTTCACTTTCTAAGACAGTTGTAAGCACTGTGTAACTGCCTCGA
GGGTGCGTGACCATTTTAACACAACGTGGTGCGATCATCCCCCTTGCGAG
GAGTAAGGGTACTCGACCCCGCACAACATTATCTACTCGACCACCATTAT
GGTTACCGCCNGGTAGCAACCCTGCTGTGTCTGCCGATAGAGCTACATCG
CACCGTGTACCGGCACCCAAAAAAATAACTGTGTCTTCATTCAGAAAGTG
TCCAACGACAAAAAGTTCGCACACCACACAAAATTTTGACCAAAATAATA
GCTCGCCCACCTCCTGTGCTGACGCGAGCATCCTTCGCACTGGTCTTCTC
CAGAGTGGTCTTCACCGTTATCTCGTGCTGGACTGACGTCTAATTCACGT
TGCCGAGTTCCTCGAAAACCTCCGTCTCCACAGACGCCGGCTGCTCGGAA
GTCAGATCCTTTCCTTTGATGGGGCTCTCGTCAGGTACCGGCGGGTGGTG
CCGAGCTTAGAACTCACCGGCGCGCTTTACGAGAGCCTCGCACACCTTTA
TCACCGTCGCCCACGCTTTACCCTCGTACCCCTTCGGCAGTTTCCGGCCC
ACGCTGGTACGCCGGCGGATGCTAAACCCATTCCGGCGGAACCGTTGGTA
CCAGGAGTTAAATTTGACCGTTGAAAGCCAGCGCCTCCTCCGGTTTCGCG
TTCGCCGGCTTCCCGCCAAGGGCGTCAGGCATCAGCTTGAGCAGGTTGCT
GATCACCTCCCGATTACTACAACCGCGGTGCTGCTTGCGCTGCTCGTTGA
TGAAGTCCAGAAGGGCTTGTTCGGCGTCGACTGTCGAAGCTTTCCCTCCA
CTGTGAACCTGCTTGGCTTTCGAAAGCTTGGGGTTAATGCTGACCTTCTC
CCTGAGCTGCTGCTCCTGCTTCAGCCACTCGATGGTACGCTTCCGAGGCA
CCTGGAGAACTTTGGCCGCGCCGTTGTTTCCCTTCGGTTGACCGTCGCAC
GGGCAGATCCCCCGTGGTTAGGCCGCCGCGTTCAGTTTGGACCAGATGGG
GTAGCTCCCTCTCCCTCCCACTGCTCCTGACCACTGGATCGGGAAGTTGG
GCTACGGGTACGCGCGTTTGCCGTTGCTTCTTTTGACGGGGTCATTGGCG
GCTAGCATCTCATCGATAGCCTCGCCGCTTGCCTTCGGCTCCACAGCGGC
AGCTCCCTGATCCGCAGAGGAAGGACCGCCAGCACTCGCCTGTGAGGCCT
GTGAGGCCTGTGAGGCGTCGGCAGGTCCCGCGCTTGCACCCTCCGACATC
GTAGCCGCGCGTTGCGTGTGGTCGAGCCCGCAGCACCGTCCCGGGCATTT
TCCCGATTTTCCGACGGTATTTCTCCGCCACGGAACTGTTGTGGTGGCAG
TTCCCCGAGACTCGTTTGTGGGTGCAGCTACAAGCTTGTCTGTCGGTTGT
GTTGTGATCGTGTTGCAGCAACACCATACACGCAAAGTGCTGCTATCCCC
TGTGGTTTTCAATGTTAGGATCGCACATATCAGGGTCTTGCCACAGGCGT

protein sequence of EsuBft76_10a-0001

>EsuBft76_10 ID=EsuBft76_10|Name=EsuBft76_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=153bp
MLNPFRRNRWYQELNLTVESQRLLRFRVRRLPAKGVRHQLEQVADHLPIT
TTAVLLALLVDEVQKGLFGVDCRSFPSTVNLLGFRKLGVNADLLPELLLL
LQPLDGTLPRHLENFGRAVVSLRLTVARADPPWLGRRVQFGPDGVAPSPS
HCS

mRNA from alignment at Scaffold_627:182001..185150+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft76_10a-0001 ID=EsuBft76_10a-0001|Name=EsuBft76_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3150bp|location=Sequence derived from alignment at Scaffold_627:182001..185150+ (Ectocarpus subulatus male Bft15b)
GCATCCTTCGCACTGGTCTTCTCCAGAGTGGTCTTCACCGTTATCTCGTG
CTGGACTGACGTCTAATTCACGTTGCCGAGTTCCTCGAAAACCTCCGTCT
CCACAGACGCCGGCTGCTCGGAAGTCAGATCCTTTCCTTTGATGGGGCTC
TCGTCAGGTACCGGCGGGTGGTGCCGAGCTTAGAACTCACCGGCGCGCTT
TACGAGAGCCTCGCACACCTTTATCACCGTCGCCCACGCTTTACCCTCGT
ACCCCTTCGGCAGTTTCCGGCCCACGCTGGTACGCCGGCGGATGCTAAAC
CCATTCCGGCGGAACCGTTGGTACCAGGAGTTAAATTTGACCGTTGAAAG
CCAGCGCCTCCTCCGGTTTCGCGTTCGCCGGCTTCCCGCCAAGGGCGTCA
GGCATCAGCTTGAGCAGGTTGCTGATCACCTCCCGATTACTACAACCGCG
GTGCTGCTTGCGCTGCTCGTTGATGAAGTCCAGAAGGGCTTGTTCGGCGT
CGACTGTCGAAGCTTTCCCTCCACTGTGAACCTGCTTGGCTTTCGAAAGC
TTGGGGTTAATGCTGACCTTCTCCCTGAGCTGCTGCTCCTGCTTCAGCCA
CTCGATGGTACGCTTCCGAGGCACCTGGAGAACTTTGGCCGCGCCGTTGT
TTCCCTTCGGTTGACCGTCGCACGGGCAGATCCCCCGTGGTTAGGCCGCC
GCGTTCAGTTTGGACCAGATGGGGTAGCTCCCTCTCCCTCCCACTGCTCC
TGACCACTGGATCGGGAAGTTGGGCTACGGGTACGCGCGTTTGCCGTTGC
TTCTTTTGACGGGGTCATTGGCGGCTAGCATCTCATCGATAGCCTCGCCG
CTTGCCTTCGGCTCCACAGCGGCAGCTCCCTGATCCGCAGAGGAAGGACC
GCCAGCACTCGCCTGTGAGGCCTGTGAGGCCTGTGAGGCGTCGGCAGGTC
CCGCGCTTGCACCCTCCGACATCGTAGCCGCGCGTTGCGTGTGGTCGAGC
CCGCAGCACCGTCCCGGGCATTTTCCCGATTTTCCGACGGTATTTCTCCG
CCACGGAACTGTTGTGGTGGCAGTTCCCCGAGACTCGTTTGTGGGTGCAG
CTACAAGCTTGTCTGTCGGTTGTGTTGTGATCGTGTTGCAGCAACACCAT
ACACGCAAAGTGCTGCTATCCCCTGTGGTTTTCAATGTTAGGATCGCACA
TATCAGGGTCTTGCCACAGGCGTGTGCGTTCGAAAGTCGCCGTACCAGCC
GCTCTGGAATAAAACGGTACCACACATATCAGGGTCTTGGCACAGGAGTG
TGTGTTGTTTCTTAGAACCAAAATATTTACTGCATTTCCGCACAGGTATC
GCGAACTTGGCACATATCGGGGTCTTCGCACACCTGTGCGAGAAAAATAT
GAAGTTCGAAACATTTGAAAAAGCGACCGCACATTGTGTGTGTTGTGTGT
GTTTTCGTCGTTTTTATTATGGTGACANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCTAAGGTTGTTCGGCAT
CTTGGGCTTACTTCCTCGGATGACAGCTGCATATGACTTAATTTACTTTC
TGGTGCTTTCACTTTCTAAGACAGTTGTAAGCACTGTGTAACTGCCTCGA
GGGTGCGTGACCATTTTAACACAACGTGGTGCGATCATCCCCCTTGCGAG
GAGTAAGGGTACTCGACCCCGCACAACATTATCTACTCGACCACCATTAT
GGTTACCGCCNGGTAGCAACCCTGCTGTGTCTGCCGATAGAGCTACATCG
CACCGTGTACCGGCACCCAAAAAAATAACTGTGTCTTCATTCAGAAAGTG
TCCAACGACAAAAAGTTCGCACACCACACAAAATTTTGACCAAAATAATA
GCTCGCCCACCTCCTGTGCTGACGCGAGCATCCTTCGCACTGGTCTTCTC
CAGAGTGGTCTTCACCGTTATCTCGTGCTGGACTGACGTCTAATTCACGT
TGCCGAGTTCCTCGAAAACCTCCGTCTCCACAGACGCCGGCTGCTCGGAA
GTCAGATCCTTTCCTTTGATGGGGCTCTCGTCAGGTACCGGCGGGTGGTG
CCGAGCTTAGAACTCACCGGCGCGCTTTACGAGAGCCTCGCACACCTTTA
TCACCGTCGCCCACGCTTTACCCTCGTACCCCTTCGGCAGTTTCCGGCCC
ACGCTGGTACGCCGGCGGATGCTAAACCCATTCCGGCGGAACCGTTGGTA
CCAGGAGTTAAATTTGACCGTTGAAAGCCAGCGCCTCCTCCGGTTTCGCG
TTCGCCGGCTTCCCGCCAAGGGCGTCAGGCATCAGCTTGAGCAGGTTGCT
GATCACCTCCCGATTACTACAACCGCGGTGCTGCTTGCGCTGCTCGTTGA
TGAAGTCCAGAAGGGCTTGTTCGGCGTCGACTGTCGAAGCTTTCCCTCCA
CTGTGAACCTGCTTGGCTTTCGAAAGCTTGGGGTTAATGCTGACCTTCTC
CCTGAGCTGCTGCTCCTGCTTCAGCCACTCGATGGTACGCTTCCGAGGCA
CCTGGAGAACTTTGGCCGCGCCGTTGTTTCCCTTCGGTTGACCGTCGCAC
GGGCAGATCCCCCGTGGTTAGGCCGCCGCGTTCAGTTTGGACCAGATGGG
GTAGCTCCCTCTCCCTCCCACTGCTCCTGACCACTGGATCGGGAAGTTGG
GCTACGGGTACGCGCGTTTGCCGTTGCTTCTTTTGACGGGGTCATTGGCG
GCTAGCATCTCATCGATAGCCTCGCCGCTTGCCTTCGGCTCCACAGCGGC
AGCTCCCTGATCCGCAGAGGAAGGACCGCCAGCACTCGCCTGTGAGGCCT
GTGAGGCCTGTGAGGCGTCGGCAGGTCCCGCGCTTGCACCCTCCGACATC
GTAGCCGCGCGTTGCGTGTGGTCGAGCCCGCAGCACCGTCCCGGGCATTT
TCCCGATTTTCCGACGGTATTTCTCCGCCACGGAACTGTTGTGGTGGCAG
TTCCCCGAGACTCGTTTGTGGGTGCAGCTACAAGCTTGTCTGTCGGTTGT
GTTGTGATCGTGTTGCAGCAACACCATACACGCAAAGTGCTGCTATCCCC
TGTGGTTTTCAATGTTAGGATCGCACATATCAGGGTCTTGCCACAGGCGT

Coding sequence (CDS) from alignment at Scaffold_627:182001..185150+

>EsuBft76_10a-0001 ID=EsuBft76_10a-0001|Name=EsuBft76_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=462bp|location=Sequence derived from alignment at Scaffold_627:182001..185150+ (Ectocarpus subulatus male Bft15b)
ATGCTAAACCCATTCCGGCGGAACCGTTGGTACCAGGAGTTAAATTTGAC
CGTTGAAAGCCAGCGCCTCCTCCGGTTTCGCGTTCGCCGGCTTCCCGCCA
AGGGCGTCAGGCATCAGCTTGAGCAGGTTGCTGATCACCTCCCGATTACT
ACAACCGCGGTGCTGCTTGCGCTGCTCGTTGATGAAGTCCAGAAGGGCTT
GTTCGGCGTCGACTGTCGAAGCTTTCCCTCCACTGTGAACCTGCTTGGCT
TTCGAAAGCTTGGGGTTAATGCTGACCTTCTCCCTGAGCTGCTGCTCCTG
CTTCAGCCACTCGATGGTACGCTTCCGAGGCACCTGGAGAACTTTGGCCG
CGCCGTTGTTTCCCTTCGGTTGACCGTCGCACGGGCAGATCCCCCGTGGT
TAGGCCGCCGCGTTCAGTTTGGACCAGATGGGGTAGCTCCCTCTCCCTCC
CACTGCTCCTGA