EsuBft767_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft767_6a-0001
Unique NameEsuBft767_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_620contigScaffold_620:115919..120662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LIK1
ProteomeIdEsuBft767_6
Protein domainsPTHR12782
Protein domainsIPR002109
Protein domainsIPR004045
Protein domainsIPR010987
Protein domainsIPR012336
Protein domainsIPR004046
Ownerapollo_admin@sb-roscoff.fr
Noteprostaglandin e synthase 2 os:mus musculus gn:ptges2 pe:1 sv:3 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length2338
Hectar predicted targeting categorymitochondrion
Evalue1.92e-191
EggNOG OGsKOG3029@1|root,KOG3029@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00672
KEGG koko:K05309
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,map00590,map01100
EC5.3.99.3
Descriptionprostaglandin-E synthase activity
COG categoryO
BRITEko00000,ko00001,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0097159
GO1901363
GO0016020
GO0045454
GO0043231
GO0006629
GO0009055
GO0015035
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft767_6aEsuBft767_6aEctocarpus subulatus male Bft15bgeneScaffold_620 115919..120662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft767_6a-0001EsuBft767_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_620 117269..120607 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft767_6a-0001-exonagat-exon-17620Ectocarpus subulatus male Bft15bexonScaffold_620 115919..117562 -
EsuBft767_6a-0001-exonEsuBft767_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_620 118005..118064 -
EsuBft767_6a-0001-exonagat-exon-17621Ectocarpus subulatus male Bft15bexonScaffold_620 118693..118959 -
EsuBft767_6a-0001-exonagat-exon-17619Ectocarpus subulatus male Bft15bexonScaffold_620 120097..120335 -
EsuBft767_6a-0001-exonagat-exon-17622Ectocarpus subulatus male Bft15bexonScaffold_620 120535..120662 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft767_6a-0001-exonagat-three_prime_utr-21242Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_620 115919..117268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft767_6a-0001-cdsEsuBft767_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_620 117269..117562 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft767_6a-0001-exonagat-five_prime_utr-13684Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_620 120608..120662 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft767_6a-0001 ID=EsuBft767_6a-0001|Name=EsuBft767_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2338bp|location=Sequence derived from alignment at Scaffold_620:115919..120662- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGCACTCCTTTGGTCGGCTCTTCGGTCGGGCACAAACACATGAGACAG
CCGCCATGCAGGCGCTTCACCGACTACTGCGAGCATCGGGGCGAGTGGCC
GTCTCGCAGCGACATGTGCTCGGTGCTGTCGGTGGTGCCGGGCTTTGCGT
TTCAACAGTAGCCATCCACAGGCAAATGGCGGCGGGGGCGATCCCGTCTT
GCTCCGCGATGACTGCGTCAACCACAGCAGCAACCGCAGGGGCAGACGGC
AACATCAGGCACTTGGAGGGGGAGGACATTACGGTGTATCAGTACAAGAT
ATGCCCGTTCTGCAACAAGCTCAAGGTGGTGATGGACTTTCTGGGCATCC
CGTACTCTGTCACGGAGGTGAACCCGCTGACGAAAAAGGAGATCAAGTTC
TCGGAAGACTACCGGAAAGTCCCCATCGTTCGCATGGGCGGGGAGCTGTT
CAAGGACTCGCCGGTCATCATTGATGAGCTTATCGCCCGCCTGCGGGAGT
CAAAGGTGATGTCGGACGAGGAGCATGCTGTGTTCTGCTCATCGGACGCC
AAGAAGTGGGCGGAGTGGGCAGACAAGCAGCTTGCCGTGTTGCTGTTCCC
GAACCTCACCCGAAATTTCTCGGAATCGTACCAGGCGTTTTCGTACGTAA
ACGATGTCGACACGTTCAGCATGATGGACAAGGTATCGAATCAGGTGATC
GGGTCGGCCGCCATGTGGGCGGCCCAAGGCAAGATAAAAAAGAAGTACAA
CATCGACGACGAGCGGGAAGCGCTCTTCTCGGCCATCAAGGACTGGACGG
ACGCCCTGGGAGAGGTCGACGGGCCCTTCTTTGGAGGGGACAGACCGAAC
CTCGGCGACCTCTGCGTGTTCGGGTGTATCCGGGCGATCGAGGGCTTGGA
CACGCACAAGGACGTGCTCGCGAGGCAGGGCGTAGGGGCGTGGTACCAGA
GCATGGTTTCGACGCTCGATTACGCTCCTTCAGCCTAGAAGTATTCGAGT
TTCCGTTTTCACGCTCTAAGGCGGGAGCGAGAGAGAGAGAGAGGGAGAGA
GGGAGAGGGAGAGAGAAGGCCTTCTAAGTTTTGGTCCTCGGGTTCTTATG
ATCCCTCGTTAGGCCTCTCCCCTTGCCGTAGATTTTTCGGATGGTGTTTT
TGTTTGCTTGCCTTTCGAAACGCTTGCGAATTACATCGTGGACGCCAAGG
GCTCGGCTCACAGAGCAGGGCATGCTCAAAAGGCAGGGCATCTGGGCGTG
TGGCATATCAACCATGGTACCGACGCTTCAATTCGCCTGAAGACCCTAGA
GATGTACTAAGTCCTGCAGTGGGTCAGGAGGGAATGATAGTGTTGTTGCA
TTTTTTTTTGTCGCTTTGATTGGTTGTCTCCGTCGAATGTTTGTCCGGCG
GTCCTTCGACGCATCCCGTCGAATTTGATTCTTCGCCGTGCGAAAAGCAT
GTGTGGGCACAAAGAGTAGGAGTTTGTATTGGCGATGGAGGCCTGCCACA
CGGACGAAAAGCGTGGTCGCGAGGGAAGGCGTCGGAGCACGTGCTATGGC
GTTCTCGCGCTAGAATGTGGTATGGGAACCGGTGTTGTTACTGCTACATT
TTTAACGGTACCAAACGTGTGGACTCAAGGCTTGAGTACGCACCTGCAGG
CTAACGAGTGTTCGGCGCGTGAAGCTTGTCTCGTTCTTGCTTCTGGTTGG
CTGCTTGGTTTGATTGACGGCGTGTGGGAACAATGGGAAACATTGACGTT
TTGGTTCTGGTTTGCTCGACCGCTTGGTGAGAGCTGCGCCCCGCTTTCTC
TTCTCTCTAAGTTGGCACTGTCTTTGACGTTTTACTTGCCAGCTCCAGGT
GTGGCGTCATGTGTTGAGATTCTCGTATGATATCGACACATAGGCTGGCA
CAGCAGTAAACAGCCGATTGTGCTCTTGGGGAAACATTTCCAATGCATGT
CCATCGCAGAACTTGGAATAGTTCTGCAAGTGGTTCAATTTGATGGGGTG
GGGGTTGGGGATCATGGTTCAGTGCCCTGTTTTATGTTTGCCCGTATTTT
CAACAAGGCCACGGCTGGAGTGTTGCTGTACCCCGACACTCATCACCTTG
TTCGTTTGTGTGCCGCCGGGCATACGGGGGAGAGTGGGAGAGAGGGGGCG
GAGTTTTCTTCGACGCTGCTCTACAGCCTATGTTCATGCCCGGAAGGACC
GTTTCCATCCTCATTCATGGTTTGGTGTGTTGCTTGTGGCCTGCAGGATG
TCGCCAGAGACACAGCAACTGACAACGAAGCGCACAGACCACTCATGGAC
GACTTGAACGGACGTTGCGGCTTGACCGGACGTTGCCT
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protein sequence of EsuBft767_6a-0001

>EsuBft767_6 ID=EsuBft767_6|Name=EsuBft767_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=310bp
MQALHRLLRASGRVAVSQRHVLGAVGGAGLCVSTVAIHRQMAAGAIPSCS
AMTASTTAATAGADGNIRHLEGEDITVYQYKICPFCNKLKVVMDFLGIPY
SVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRESK
VMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVND
VDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDA
LGEVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSM
VSTLDYAPSA
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mRNA from alignment at Scaffold_620:115919..120662-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft767_6a-0001 ID=EsuBft767_6a-0001|Name=EsuBft767_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4744bp|location=Sequence derived from alignment at Scaffold_620:115919..120662- (Ectocarpus subulatus male Bft15b)
TGTGCACTCCTTTGGTCGGCTCTTCGGTCGGGCACAAACACATGAGACAG
CCGCCATGCAGGCGCTTCACCGACTACTGCGAGCATCGGGGCGAGTGGCC
GTCTCGCAGCGACATGTGCTCGGTGCTGGTAAGCTTTCGCCCCTAAGTCA
GGTAGACAGAGTGGGAATGGGAGATGCCAATCGATCGTGTGCGCCATGTG
CACACCTGATGCATTACTTGCAGTCTGATCTCAACGGACAGCAGCATCAG
CTAGGACGCTAGGACTTGCAAAGAACCCTTTATCCCCACCGTTCACTGAC
ATTCCCCACTACCATGCCACCGTGCAGTCGGTGGTGCCGGGCTTTGCGTT
TCAACAGTAGCCATCCACAGGCAAATGGCGGCGGGGGCGATCCCGTCTTG
CTCCGCGATGACTGCGTCAACCACAGCAGCAACCGCAGGGGCAGACGGCA
ACATCAGGCACTTGGAGGGGGAGGACATTACGGTGTATCAGTACAAGATA
TGCCCGTTCTGCAACAAGCTCAAGGTGGTGATGGACTTTCTGGGCATCCC
GTACTCTGTCACGGAGGTAAAGTCAAGGCTTTCGGCCGCAAAACACAAAC
TCTGCAAAATGGTAAGGCCTGTGCTGGGCGGGGACCGACCCGAGTGATGA
TGTTGCGAGCTCCGCAAAACAACAGCAGCTCGCCACGTGTTTTTGCGCCC
TGTTTCTACCGAACACCGAGAGTCATACCCTCGGTGCCGTTGTTATCGAA
TGATTTGCTTCGTGCTGCCTTGTACTGCTCGTACAAGATGACGAGTTCTG
GTTGAAGTGGTTCAAAACTGATCACCCACGGTTCCGTCAGTTCAGCTCGT
GGTTTCCAGAACGCTCACAAATCAATAACACATTCACACCTTCCTGAACA
AGCGACTTGCTTGGCTGGAATGCAACATGTATGCATACACCGAACGGTAC
AGAGGTCCCCTTGCATTTATACATGAAAGCCAATATGCATACGAATAAAT
CTTGTCGTGAACACGGGGAACGCGCCTAATAATCTCGGGTCCCTTCGACA
CACCTGTGGGAAAAACGAAAAAAACACGCCCCCGTTTCCGTGGTATGTCA
GGGTTTGTCAATGCGCAGGGCTATTTTATCAAACTCTGGTGCGATGCATC
TATCTCGTCCGTATAAGAGAATCAAATACGTTTTTGCGGCAAATACTCTA
ACATGGTGCGCATTAGGTGTGTGCCACAAATTGAGCCGAGTACCTTTTTT
ATAGCATGCTTTACCAAATGCCCGTCCCCGCAATGGCGTACAACGTTGGA
CTTTGTGGTACGGATGCGCCGGCTGATAAAAGCCAAATACAAGTTTGCTG
CACGCGTGGCTGTTTTTGGAGTAGCGGGTGAAAAGACGTTTTGTTCAACT
TTTGGTGATAGAGCTCTTCCTGTCCTCCATCTGCCCACACTCGAACCCGT
TGCCAACCCAGCGTAGAGTAACAACAACGACCAGTATCAGGTTGAATCGC
TGAAGACATGATGCCACTTTCACAATGCAGAACCCCCCCACGTAGCCTGG
GCCGGCGAAAACCCGGCATATTACTCCGTCCTGGCATTGTAGGGATACGA
GGTCAATGGCCTATCGACTATGGCATGCGTTGACATGAGTACCCCCTCCC
TTCCACTGAAAAGAAGCGCGCCCCCACACCACAAACAAATAAAATATGTC
CAGGTGAACCCGCTGACGAAAAAGGAGATCAAGTTCTCGGAAGACTACCG
GAAAGTCCCCATCGTTCGCATGGGCGGGGAGCTGTTCAAGGACTCGCCGG
TCATCATTGATGAGCTTATCGCCCGCCTGCGGGAGTCAAAGGTGATGTCG
GACGAGGAGCATGCTGTGTTCTGCTCATCGGACGCCAAGAAGTGGGCGGA
GTGGGCAGACAAGCAGCTTGCCGTGTTGCTGTTCCCGAACCTCACCCGAA
ATTTCTCGGAATCGTACCAGGTGAGAGATGTCTTGCCTCGGCAGGAGAGG
GGGGGGTGTACTCATGTTTTGAATACCTCAAAGGTTAGCCCATTGATCAC
GCGCCGTCGAGAGGACGGAGTTTGGCACAGGAGGGGAGAGCAAGAGATAG
AAACTCGGGCTTTGCTGTGGCGTTGTCAATAGTTCTCGGCTCCCGAACGC
GTAGGAACGGACGGGTGGACGAGCAAGCAGTACTGATGTCCGCGTATCAC
ATCAGGAAGAGAGGTCTCGTTCAATGGTTCCATGGAGAAGTGGTTATTCC
CCCGTAAAGGTTGTATCCCCCCGGCCTCCTGTTGGATAGAGTGCCAACAT
GTGGGCAACACACGCGCTATTTCGCATTTTCCCCCGCCGTTTTTGGGTGC
TGGAGTAGCCCTCCGCAACGCGAAAATACGGAACACCCCAGCCTACGCAT
AAGCCTAGAAGAATATGTTATATGTTGGTTTCCTCGCAGAAGAAACATGG
CGTTCCAGGTTTTTGCCTAAAGCAAGAGGTCCTTGTCTGATGGTGCATTC
TGCACACAAAGCGTTCACACCTTTTCTTCCATAAGTTTCGTTGCCGCTCG
TTATCCACCGGCAAACTGTTTCTGCACGTGCACTTTGGTTGTATGCAGGC
GTTTTCGTACGTAAACGATGTCGACACGTTCAGCATGATGGACAAGGTAT
CGAATCAGGTCAGTGTGTTGGCCCACCTTCTCTCAGATCGAGAGTGGTTG
CGCTATCATCGAACGCACTTTTGTTGCCTCCGTGTGCAACATATGTTAAG
TCGATGGGTCTTGACAAACTGTCGTGTTTGTACCGTTTGCAAGTAGCCTT
GACAACAGGTACAGAACACGCCCGCACTTAGGAACCACTGTTTTAGTTTC
GGCCGATGCTGGGGTTGTTACTGTATTCCTAGGGTCATGCTACGAATGGT
CGGTATATAGGTTTTATGGTAGGGATACTTAACGAAGCTCACAAATGGTG
AGCAGGTTCTTATATTTTGATTTTTTTAGGCTCGATTTTTCTCAACTTAT
GGGTTCTTAAGTGCGGGCGCGTTCTGTATATGTCCCTACCCTGTGATCCT
TGTTGACCCGCGAACGTACACCTCAAGCGATGAATCGTTTACGTGGACAG
GTGATCGGGTCGGCCGCCATGTGGGCGGCCCAAGGCAAGATAAAAAAGAA
GTACAACATCGACGACGAGCGGGAAGCGCTCTTCTCGGCCATCAAGGACT
GGACGGACGCCCTGGGAGAGGTCGACGGGCCCTTCTTTGGAGGGGACAGA
CCGAACCTCGGCGACCTCTGCGTGTTCGGGTGTATCCGGGCGATCGAGGG
CTTGGACACGCACAAGGACGTGCTCGCGAGGCAGGGCGTAGGGGCGTGGT
ACCAGAGCATGGTTTCGACGCTCGATTACGCTCCTTCAGCCTAGAAGTAT
TCGAGTTTCCGTTTTCACGCTCTAAGGCGGGAGCGAGAGAGAGAGAGAGG
GAGAGAGGGAGAGGGAGAGAGAAGGCCTTCTAAGTTTTGGTCCTCGGGTT
CTTATGATCCCTCGTTAGGCCTCTCCCCTTGCCGTAGATTTTTCGGATGG
TGTTTTTGTTTGCTTGCCTTTCGAAACGCTTGCGAATTACATCGTGGACG
CCAAGGGCTCGGCTCACAGAGCAGGGCATGCTCAAAAGGCAGGGCATCTG
GGCGTGTGGCATATCAACCATGGTACCGACGCTTCAATTCGCCTGAAGAC
CCTAGAGATGTACTAAGTCCTGCAGTGGGTCAGGAGGGAATGATAGTGTT
GTTGCATTTTTTTTTGTCGCTTTGATTGGTTGTCTCCGTCGAATGTTTGT
CCGGCGGTCCTTCGACGCATCCCGTCGAATTTGATTCTTCGCCGTGCGAA
AAGCATGTGTGGGCACAAAGAGTAGGAGTTTGTATTGGCGATGGAGGCCT
GCCACACGGACGAAAAGCGTGGTCGCGAGGGAAGGCGTCGGAGCACGTGC
TATGGCGTTCTCGCGCTAGAATGTGGTATGGGAACCGGTGTTGTTACTGC
TACATTTTTAACGGTACCAAACGTGTGGACTCAAGGCTTGAGTACGCACC
TGCAGGCTAACGAGTGTTCGGCGCGTGAAGCTTGTCTCGTTCTTGCTTCT
GGTTGGCTGCTTGGTTTGATTGACGGCGTGTGGGAACAATGGGAAACATT
GACGTTTTGGTTCTGGTTTGCTCGACCGCTTGGTGAGAGCTGCGCCCCGC
TTTCTCTTCTCTCTAAGTTGGCACTGTCTTTGACGTTTTACTTGCCAGCT
CCAGGTGTGGCGTCATGTGTTGAGATTCTCGTATGATATCGACACATAGG
CTGGCACAGCAGTAAACAGCCGATTGTGCTCTTGGGGAAACATTTCCAAT
GCATGTCCATCGCAGAACTTGGAATAGTTCTGCAAGTGGTTCAATTTGAT
GGGGTGGGGGTTGGGGATCATGGTTCAGTGCCCTGTTTTATGTTTGCCCG
TATTTTCAACAAGGCCACGGCTGGAGTGTTGCTGTACCCCGACACTCATC
ACCTTGTTCGTTTGTGTGCCGCCGGGCATACGGGGGAGAGTGGGAGAGAG
GGGGCGGAGTTTTCTTCGACGCTGCTCTACAGCCTATGTTCATGCCCGGA
AGGACCGTTTCCATCCTCATTCATGGTTTGGTGTGTTGCTTGTGGCCTGC
AGGATGTCGCCAGAGACACAGCAACTGACAACGAAGCGCACAGACCACTC
ATGGACGACTTGAACGGACGTTGCGGCTTGACCGGACGTTGCCT
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Coding sequence (CDS) from alignment at Scaffold_620:115919..120662-

>EsuBft767_6a-0001 ID=EsuBft767_6a-0001|Name=EsuBft767_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=933bp|location=Sequence derived from alignment at Scaffold_620:115919..120662- (Ectocarpus subulatus male Bft15b)
ATGCAGGCGCTTCACCGACTACTGCGAGCATCGGGGCGAGTGGCCGTCTC
GCAGCGACATGTGCTCGGTGCTGTCGGTGGTGCCGGGCTTTGCGTTTCAA
CAGTAGCCATCCACAGGCAAATGGCGGCGGGGGCGATCCCGTCTTGCTCC
GCGATGACTGCGTCAACCACAGCAGCAACCGCAGGGGCAGACGGCAACAT
CAGGCACTTGGAGGGGGAGGACATTACGGTGTATCAGTACAAGATATGCC
CGTTCTGCAACAAGCTCAAGGTGGTGATGGACTTTCTGGGCATCCCGTAC
TCTGTCACGGAGGTGAACCCGCTGACGAAAAAGGAGATCAAGTTCTCGGA
AGACTACCGGAAAGTCCCCATCGTTCGCATGGGCGGGGAGCTGTTCAAGG
ACTCGCCGGTCATCATTGATGAGCTTATCGCCCGCCTGCGGGAGTCAAAG
GTGATGTCGGACGAGGAGCATGCTGTGTTCTGCTCATCGGACGCCAAGAA
GTGGGCGGAGTGGGCAGACAAGCAGCTTGCCGTGTTGCTGTTCCCGAACC
TCACCCGAAATTTCTCGGAATCGTACCAGGCGTTTTCGTACGTAAACGAT
GTCGACACGTTCAGCATGATGGACAAGGTATCGAATCAGGTGATCGGGTC
GGCCGCCATGTGGGCGGCCCAAGGCAAGATAAAAAAGAAGTACAACATCG
ACGACGAGCGGGAAGCGCTCTTCTCGGCCATCAAGGACTGGACGGACGCC
CTGGGAGAGGTCGACGGGCCCTTCTTTGGAGGGGACAGACCGAACCTCGG
CGACCTCTGCGTGTTCGGGTGTATCCGGGCGATCGAGGGCTTGGACACGC
ACAAGGACGTGCTCGCGAGGCAGGGCGTAGGGGCGTGGTACCAGAGCATG
GTTTCGACGCTCGATTACGCTCCTTCAGCCTAG
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