EsuBft767_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft767_5a-0001
Unique Name	EsuBft767_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_620	contig	Scaffold_620:112227..115405 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7091.BGIBMGA000884-TA
ProteomeId	EsuBft767_5
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	IPR006629
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	167
Hectar predicted targeting category	other localisation
Evalue	9.52e-08
EggNOG OGs	2DZV6@1\|root,2S710@2759\|Eukaryota,3A8H2@33154\|Opisthokonta,3BUIV@33208\|Metazoa,3DBMU@33213\|Bilateria,420YT@6656\|Arthropoda,3SPCH@50557\|Insecta,447MQ@7088\|Lepidoptera
Ec32 ortholog description	LPS-induced tumour necrosis factor alpha factor
Ec32 ortholog	Ec-18_003300.1
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K19363
KEGG Pathway	ko04142,map04142
GOs	GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009631,GO:0050896
Description	Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
COG category	S
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft767_5a	EsuBft767_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_620 112227..115405 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft767_5a-0001-exon	agat-exon-17618	Ectocarpus subulatus male Bft15b	exon	Scaffold_620 112227..112911 +
EsuBft767_5a-0001-exon	EsuBft767_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_620 114415..115405 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft767_5a-0001-exon	agat-five_prime_utr-13683	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_620 112227..112335 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft767_5a-0001-cds	EsuBft767_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_620 112336..112911 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft767_5a-0001-exon	agat-three_prime_utr-21241	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_620 114577..115405 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft767_5a-0001	EsuBft767_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_620 112336..114576 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_620:112227..115405+
coding sequence from alignment at Scaffold_620:112227..115405+

spliced messenger RNA

>EsuBft767_5a-0001 ID=EsuBft767_5a-0001|Name=EsuBft767_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1676bp|location=Sequence derived from alignment at Scaffold_620:112227..115405+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TACACAAGCCTTCCGCTCTGGTCGAGGTGGGCTTCCGGCTACGGGTGGCA
GTAGCGTACCATCCACTTCCCGCGGAAAGCTAGAGGTTGAAAACGACCGC
GCGGAAGCCATGGCGTCCCGAAGCGGCTACAAGTCTCTTCCGGATTCAGC
CGCAGAGGAGGATGCTCGAACCGCCGACGCGGAGCAACAAGTTGCTGCTG
CTGGCGCACCCAGGCCAGCAGCACCCGGCAAGGGCGAAGACCCTCCCGTA
GTCGGAGGAAAAGGCTCTGGAGGAAGTTCCAGCAGCGGCGGCGGCAGCAG
CAAAGCGACGACAACAACGGCGGGGCGAGAGAAAAAGGACCCTGCAGCTT
CTTCAGCAGATGGTGGCGGCGGAGAGTTGCCCACAGCGCAGGGCATCTTC
GTCGGCGACCCCGTCTCCCAATCCACACCGTACCACGCCGCCCCCCCTGC
GCATGCCACCGTGATCACGTCTGCGCCGGCCTCCTACGATCATGTAGCTG
CCGCCGCCGCCGCTGCTGCGGGCGACGGTCGGGGCATTGCCGTGCCAAGC
GGGGGAGGCGGGCAGCACACGGTGATCGTGATGAACGCGCCGCCGCCGGG
GCACCAGTTCGGAGAGTGGGGGAGGCAACCTCAGGCCTTTGTTTGTCGGG
CGTGCGGGTTCACGGGCTTGTCACTCACCATGACGGATCCTTGCTCCAAT
ATACCAATCCTGGCCGCGGCGTGCTGCTGCCTCGTGGGATGCTGGCCCTG
CAGCTTCGTGCCGTTCCTGATTCCGGAGCTCCGAGATACGGTGCACCGGT
GCCCGAATTGTCACGTATCCGTTGGCCGATCTCGACAATTCGATTGATCG
AAAACGAGTGTTTGTAGTGTTGCCTTCTTTTGGTTCTCTTGTAGTTTTGA
TGGAAAGCAAGTGACATAGTTTGAGATTTTGCGCAGTAGTTGTGCTGTGT
TGATGTGTTTCTGATTGGATAGGATGTAGAAGCCGTATGTATGTAACGTT
GTTTTTTTTTCCTTTTTGTGCCTTTGAAGCGAAAGCAAACTTCGCAGTGT
TTTGTATGAGTGTTGTGTGGTGCCAGGTGAATGGCGTCTTGTGTTCCACC
ACACTGTTGTAGCTAGGCGCATGGGGTATGCTTTGTGGAGGGCCTTGGGG
GTATCATGAGTTGAGGGACCATACATTACGTGATGGTCATCCCAGCGATC
GACGTTATAGATGAGCGTGATAAACGGGTCCCACCTCGTTCTGTAGGAAA
GAATGTGAGACCACGGGGGGTCAATATGACCGGATTCACCGGTGCCTTTT
CTCTTGGCTTTGTTGAGCGGGTGATGGTTGTTTTGCCCGTTTCCAAGACG
CACGGCGATCATTCATGTCACGCTCCTTTGAGCTCCCATTAAGAGCGCTC
TCCTTCGGCATGGCACGTCGCACTGTACGGAAGCGTTAGCGAAGCTCTCG
GATATGCCTTGACCGTCCGCTACGCTAGCAGGCTGCCTGCGTGTGTTTCC
TTGTGCGTGAGCCTGTGTTTTTTGTTATGTCTATATCGACCGCGCTGTAA
GAGATATCAGTTTTAACGGAACATTGAAAACGCTTGGAGTAGAATGGTCA
ACAGTGTACTTTGGTAGTATCAGTACATGCTGTGCCATCTCTGTCCTTGG
TGCTCCCCCTCCCATCCGGCAACTAG

protein sequence of EsuBft767_5a-0001

>EsuBft767_5 ID=EsuBft767_5|Name=EsuBft767_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=245bp
MASRSGYKSLPDSAAEEDARTADAEQQVAAAGAPRPAAPGKGEDPPVVGG
KGSGGSSSSGGGSSKATTTTAGREKKDPAASSADGGGGELPTAQGIFVGD
PVSQSTPYHAAPPAHATVITSAPASYDHVAAAAAAAAGDGRGIAVPSGGG
GQHTVIVMNAPPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDPCSNIPI
LAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHVSVGRSRQFD

mRNA from alignment at Scaffold_620:112227..115405+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft767_5a-0001 ID=EsuBft767_5a-0001|Name=EsuBft767_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3179bp|location=Sequence derived from alignment at Scaffold_620:112227..115405+ (Ectocarpus subulatus male Bft15b)
TACACAAGCCTTCCGCTCTGGTCGAGGTGGGCTTCCGGCTACGGGTGGCA
GTAGCGTACCATCCACTTCCCGCGGAAAGCTAGAGGTTGAAAACGACCGC
GCGGAAGCCATGGCGTCCCGAAGCGGCTACAAGTCTCTTCCGGATTCAGC
CGCAGAGGAGGATGCTCGAACCGCCGACGCGGAGCAACAAGTTGCTGCTG
CTGGCGCACCCAGGCCAGCAGCACCCGGCAAGGGCGAAGACCCTCCCGTA
GTCGGAGGAAAAGGCTCTGGAGGAAGTTCCAGCAGCGGCGGCGGCAGCAG
CAAAGCGACGACAACAACGGCGGGGCGAGAGAAAAAGGACCCTGCAGCTT
CTTCAGCAGATGGTGGCGGCGGAGAGTTGCCCACAGCGCAGGGCATCTTC
GTCGGCGACCCCGTCTCCCAATCCACACCGTACCACGCCGCCCCCCCTGC
GCATGCCACCGTGATCACGTCTGCGCCGGCCTCCTACGATCATGTAGCTG
CCGCCGCCGCCGCTGCTGCGGGCGACGGTCGGGGCATTGCCGTGCCAAGC
GGGGGAGGCGGGCAGCACACGGTGATCGTGATGAACGCGCCGCCGCCGGG
GCACCAGTTCGGAGAGTGGGGGAGGCAACCTCAGGCCTTTGTTTGTCGGG
CGTGCGGGTTCACGGGCTTGTCACTCACCATGACGGTAAGAGGATCTCAT
GCTTGTTTTGGGTGGGGTTTAAGAACATGATAACTTTCGGGGACTGCTGC
AGGACTGCCGCAGTCCATCATATTCATAGCAGGCTGTACAAATGTCGCTT
TCTGCCTGTTTGGGGGGGGACGGCGTAACCGGAACTCAAGACCTCAAACA
CCAAGAATACACAAGCCATGTTTTTCTTTCCCCTACCCGAAAATGGCTGG
GCTGTTCGACCAAAACCTATGCGCACAAGTACACGTCAGCAACGCCATAC
GCTCGAATTCGGACGTTCTGACGGCCCGCCGGGCGGAGGCAGACCCACCC
CCCGCCGGCGTTGGAAGTCTCGGGGGAAACGGCAGGCGGTCTGTCTGTGC
AAATGATCGAGAAGAAGAGCTGGATGAATACCTCCCTCACGAGATGCGAC
ACTCACGGGACTCCTAAAAAAATAGACACATTCCCTCCCTCCCGCTACTT
GCTCATTGGCGACAAACGAGGGCCAGTGGTGTGTGTCCGACCCGTTATTG
TGTGCATTGTTTTGGTCGAATAGACCAACCATTTTCGGGTAGGGGAAAGA
AAAGCCGGGTACCCCTCTGGGGGGTGAATAACCAAGATCGGATGCACCCG
GTGGAAGACGAAAGACGGCCAAGGTCGGGTAGGAGTGGGCGTCGGCCAAT
CAGATGGTGTCGTGCGGTCGCTCCCAGCAGCGTCTTGTAGGGGTACCCAA
TAATGGCCGTGTTCTGACCGGGTGAACCCGATTTTGGCCACTGCTCCTAT
TAATACAACCCTGCGTCGCCGCGGGTGCTCCCACCACGTTCGACCGACTT
TCAAAATCTGCCCTTTTATTAAAGGATTGGACGGGCAGCAGCAGTCGTGC
TTAAAATATATGTCCGTGAACGCGTCGGTTGCTGCGCGCCCCAAGGCCCC
ACCTGGAGAATGTTGTGTGTACGGTTTTCGGAGACGGCTTTTCGCGTGAA
TGGGGTCGTTGGGAATCACCACTCGTGCCAATTGCCGGTGCACAACTTTT
GTGCCACCAGCATCTGCTTGGCCTAGAGGATTCCCCCGGAGGTTGGGTTC
CGGTGCAGCGGCAGCAAAGGCCAGCTGAAGATGACTACACCACAGGAGAA
AAAGAGGCAGTTTTGCGACAAGCGACTTTGGCGTGTACCAGGGCTGGTCA
CCCCAAGGGGTTCGGTTGTTATTAGCTTCAGCACCTCTTCAGTAGTGAGT
TCACATCTCGGCACAACCAATAAGTTACCAACTGGGTGTATGCGGCGGCT
CGCACTTTTGAAGAGCCCCTTCGGATGCTTTCCACGGAGGCTGGCTTGGG
TACGTGCGTGTCTCCTCGTGTTCCTTTTCGGGGACCTTTTTTTGACGCGA
TACGTTCGTACTTCCTTGGCACACGACCGACACACTCCGGATACATAACT
CCCGTGTGTGCATGTTACAGCGATCGCTTGCACGACAACGACCTTAAGTC
TTACTTTTCATCTCTTGTCGTTTCTGGGTTGCCGACAGGATCCTTGCTCC
AATATACCAATCCTGGCCGCGGCGTGCTGCTGCCTCGTGGGATGCTGGCC
CTGCAGCTTCGTGCCGTTCCTGATTCCGGAGCTCCGAGATACGGTGCACC
GGTGCCCGAATTGTCACGTATCCGTTGGCCGATCTCGACAATTCGATTGA
TCGAAAACGAGTGTTTGTAGTGTTGCCTTCTTTTGGTTCTCTTGTAGTTT
TGATGGAAAGCAAGTGACATAGTTTGAGATTTTGCGCAGTAGTTGTGCTG
TGTTGATGTGTTTCTGATTGGATAGGATGTAGAAGCCGTATGTATGTAAC
GTTGTTTTTTTTTCCTTTTTGTGCCTTTGAAGCGAAAGCAAACTTCGCAG
TGTTTTGTATGAGTGTTGTGTGGTGCCAGGTGAATGGCGTCTTGTGTTCC
ACCACACTGTTGTAGCTAGGCGCATGGGGTATGCTTTGTGGAGGGCCTTG
GGGGTATCATGAGTTGAGGGACCATACATTACGTGATGGTCATCCCAGCG
ATCGACGTTATAGATGAGCGTGATAAACGGGTCCCACCTCGTTCTGTAGG
AAAGAATGTGAGACCACGGGGGGTCAATATGACCGGATTCACCGGTGCCT
TTTCTCTTGGCTTTGTTGAGCGGGTGATGGTTGTTTTGCCCGTTTCCAAG
ACGCACGGCGATCATTCATGTCACGCTCCTTTGAGCTCCCATTAAGAGCG
CTCTCCTTCGGCATGGCACGTCGCACTGTACGGAAGCGTTAGCGAAGCTC
TCGGATATGCCTTGACCGTCCGCTACGCTAGCAGGCTGCCTGCGTGTGTT
TCCTTGTGCGTGAGCCTGTGTTTTTTGTTATGTCTATATCGACCGCGCTG
TAAGAGATATCAGTTTTAACGGAACATTGAAAACGCTTGGAGTAGAATGG
TCAACAGTGTACTTTGGTAGTATCAGTACATGCTGTGCCATCTCTGTCCT
TGGTGCTCCCCCTCCCATCCGGCAACTAG

Coding sequence (CDS) from alignment at Scaffold_620:112227..115405+

>EsuBft767_5a-0001 ID=EsuBft767_5a-0001|Name=EsuBft767_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=738bp|location=Sequence derived from alignment at Scaffold_620:112227..115405+ (Ectocarpus subulatus male Bft15b)
ATGGCGTCCCGAAGCGGCTACAAGTCTCTTCCGGATTCAGCCGCAGAGGA
GGATGCTCGAACCGCCGACGCGGAGCAACAAGTTGCTGCTGCTGGCGCAC
CCAGGCCAGCAGCACCCGGCAAGGGCGAAGACCCTCCCGTAGTCGGAGGA
AAAGGCTCTGGAGGAAGTTCCAGCAGCGGCGGCGGCAGCAGCAAAGCGAC
GACAACAACGGCGGGGCGAGAGAAAAAGGACCCTGCAGCTTCTTCAGCAG
ATGGTGGCGGCGGAGAGTTGCCCACAGCGCAGGGCATCTTCGTCGGCGAC
CCCGTCTCCCAATCCACACCGTACCACGCCGCCCCCCCTGCGCATGCCAC
CGTGATCACGTCTGCGCCGGCCTCCTACGATCATGTAGCTGCCGCCGCCG
CCGCTGCTGCGGGCGACGGTCGGGGCATTGCCGTGCCAAGCGGGGGAGGC
GGGCAGCACACGGTGATCGTGATGAACGCGCCGCCGCCGGGGCACCAGTT
CGGAGAGTGGGGGAGGCAACCTCAGGCCTTTGTTTGTCGGGCGTGCGGGT
TCACGGGCTTGTCACTCACCATGACGGATCCTTGCTCCAATATACCAATC
CTGGCCGCGGCGTGCTGCTGCCTCGTGGGATGCTGGCCCTGCAGCTTCGT
GCCGTTCCTGATTCCGGAGCTCCGAGATACGGTGCACCGGTGCCCGAATT
GTCACGTATCCGTTGGCCGATCTCGACAATTCGATTGA