EsuBft767_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft767_3a-0001
Unique NameEsuBft767_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_620contigScaffold_620:85835..89618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LIK5
ProteomeIdEsuBft767_3
Protein domainsIPR007852
Protein domainsPTHR12466
Ownerapollo_admin@sb-roscoff.fr
Noteparafibromin os:gallus gallus gn:cdc73 pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length867
Hectar predicted targeting categoryother localisation
Evalue1.56e-123
EggNOG OGsCOG5157@1|root,KOG3786@2759|Eukaryota
Ec32 ortholog descriptionRNA polymerase II accessory factor, Cdc73
Ec32 orthologEc-18_003280.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K15175
GOsGO:0000122,GO:0000428,GO:0000988,GO:0000989,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006325,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0008023,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016569,GO:0016570,GO:0016591,GO:0016593,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034402,GO:0034622,GO:0034641,GO:0036211,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0140110,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Descriptionrecruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
COG categoryK
BRITEko00000,ko03021
Cross References
External references for this mRNA
DatabaseAccession
GO0006357
GO0051254
GO0008152
GO0008285
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft767_3aEsuBft767_3aEctocarpus subulatus male Bft15bgeneScaffold_620 85835..89618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft767_3a-0001EsuBft767_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_620 86804..89618 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft767_3a-0001-exonagat-exon-17603Ectocarpus subulatus male Bft15bexonScaffold_620 85835..85913 +
EsuBft767_3a-0001-exonagat-exon-17605Ectocarpus subulatus male Bft15bexonScaffold_620 86601..86941 +
EsuBft767_3a-0001-exonEsuBft767_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_620 87359..87520 +
EsuBft767_3a-0001-exonagat-exon-17604Ectocarpus subulatus male Bft15bexonScaffold_620 88132..88201 +
EsuBft767_3a-0001-exonagat-exon-17606Ectocarpus subulatus male Bft15bexonScaffold_620 89404..89618 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft767_3a-0001-exonagat-five_prime_utr-13679Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_620 85835..85913 +
EsuBft767_3a-0001-exonagat-five_prime_utr-13680Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_620 86601..86803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft767_3a-0001-cdsEsuBft767_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_620 86804..86941 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft767_3a-0001 ID=EsuBft767_3a-0001|Name=EsuBft767_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=867bp|location=Sequence derived from alignment at Scaffold_620:85835..89618+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTGGGCTAGCCGACCCACACACCACATCCCGTCCACGCCCCTTTTGT
ATAAGCCAGACAGCAGAAGCAGGCGAAAGGTGCCAGGGGGAGCAGGTAGC
AACCTAACACGCGCAAAAAACAGGGGGCTCCGGCAAAACAAGCCGGCGAA
ACGGGGCGGTTGGGGAGGCACCGGGCAACGATAAGTGGGGGATCAGATCA
GGGCTGGAGTAGTCCCGGCGACCATCGTACAGAGGCTTTCGCCCGCTGTT
GGGTTCGGTGGTACGGTAGTAGTGCGGGCGCGATGGAGGCATTATCGCTG
CTGCGGCAATGTACCATGGCGAGGAAGACCGTGAGGGAGGAGAAAGACCA
CTACGTTTTTGGCCACAAGAGGGTGCCCAAGGACACCCCGACCGCCTGGA
AGTCACAAGTGCAGAGCGAGTACTACAGCTTAAAGCAGCTGGTAATCCTG
CTGGAGCACGCGGACGCGCCCATGGTGACGTACATCGCGGCCTGCACCAG
CAAGGGTGTCAAGTGGGTAGCCTCCATCGAAAAGGCGGACGTGTTGGCCT
ACCTCAGGGGGCAAACGGACGATGCCCCTCAGATCGATAGGACAGCAGCA
CCGACGTCGTCGGAGAGGGCTAACAAGCGCTCACACAACGAGCTCCAAAA
AGGCATGACGGATACCGAGATGCGAGAGGCAAAGAAGGCGCACGCCCAAC
GCTTGGAGAACCGAGGAGGGGGGGGGAGTCGCGCGGGGCTGCTGAGCGGA
CAGGACCCCCTGTTGTCGAGGGGGGAGGGCACGGGAATCGGCGGGATATC
TCAGGACAAGCTGCTGGAGCTTCGGGCCAAGCGTCTTTCCCACAAGCGAA
ACACCATTGTGTCGTGA
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protein sequence of EsuBft767_3a-0001

>EsuBft767_3 ID=EsuBft767_3|Name=EsuBft767_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MEALSLLRQCTMARKTVREEKDHYVFGHKRVPKDTPTAWKSQVQSEYYSL
KQLVILLEHADAPMVTYIAACTSKGVKWVASIEKADVLAYLRGQTDDAPQ
IDRTAAPTSSERANKRSHNELQKGMTDTEMREAKKAHAQRLENRGGGGSR
AGLLSGQDPLLSRGEGTGIGGISQDKLLELRAKRLSHKRNTIVS
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mRNA from alignment at Scaffold_620:85835..89618+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft767_3a-0001 ID=EsuBft767_3a-0001|Name=EsuBft767_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3784bp|location=Sequence derived from alignment at Scaffold_620:85835..89618+ (Ectocarpus subulatus male Bft15b)
CTGCTGGGCTAGCCGACCCACACACCACATCCCGTCCACGCCCCTTTTGT
ATAAGCCAGACAGCAGAAGCAGGCGAAAGGTGAGGAAGAGATGGATTTTG
TGTTAGGTTGACTGTGGCGAGCAGAGTTTGGCGCGTTTACGGCGGGATGG
TTGTGTCCAAGCCATCGCCGCCGCTGAGCTGCTGCTGTCAGACGTGCTCG
GGGATGCGGTCTATCAAGTTGACTAGAGTACTACCAAGTGCCTCACCCAG
GATCGGGTGTACTGCTGTAGCCATCTTCCTTGTTGGTTCGAACCTTTGTG
CCTGTCGCGCAAAGACGGAGTGCGTTTACTCTCAGCTGCGATACATATAG
ACCATATTGTTTTTTTTGGGGTTTCACTGCTGCCTGTGGAAGCAGCATCA
CGCCTCCGATTTGCCGTTTGTTCGAGGCTGCTTGCAGCACGAGACATGAA
ATCTCATCTCAACTCAACTCGGCACAGCGGCGATCCGCACACAACAGACT
TTCCGGTATGTGAAGACTCGGGGAACAATGGCACAGCGGCAGCACTCTCG
GTAGAATGCAATGTGGTAATTTATCCTCGACATCGATTGTAATTGTTTGC
CTGTTCTCGACAGCTTATCCTACCCGTGGGGGTGCGAAGTCTCGCGTACC
CCGGTGCAATCAGTATCTACGCCTTTTTACACTATTACTCTCAGCCATGA
GGGCACACAGTAGCATTGCCATCTGTACCGGATTAATAGCTACAACGTGT
GTTCCGCGCGTGTTAGGTGCCAGGGGGAGCAGGTAGCAACCTAACACGCG
CAAAAAACAGGGGGCTCCGGCAAAACAAGCCGGCGAAACGGGGCGGTTGG
GGAGGCACCGGGCAACGATAAGTGGGGGATCAGATCAGGGCTGGAGTAGT
CCCGGCGACCATCGTACAGAGGCTTTCGCCCGCTGTTGGGTTCGGTGGTA
CGGTAGTAGTGCGGGCGCGATGGAGGCATTATCGCTGCTGCGGCAATGTA
CCATGGCGAGGAAGACCGTGAGGGAGGAGAAAGACCACTACGTTTTTGGC
CACAAGAGGGTGCCCAAGGACACCCCGACCGCCTGGAAGTCACAAGTGCA
GAGCGAGGTGAGCGCCCGCCGCCGCCGCCGCCGGGGGGGGAGAGGGGCAC
TCATGCCAACGCATGCCGTAGTTCGTTAGACCATTGACCTCGCATCCATA
CAATGCCCGGACGGAGCGGCATGTCGGTTTTTTTCGCCGGCCCAGGCTAT
GTTCTACAAAGGTGAACCAGAAGCTTGATGTGCGTTTGCTTTGCCGAACC
AGATGTGCGCGCGCGGGGGGTGATGGGCTGGAGGCTAGGTGGTGCCGTGT
GCGCCGCGTATGGTGACGAGACCCTTGTATATCGGGTAATTGTGGACTGA
CTACTTTCAATGTTAATCCACCTGTGCCTGCTTCTCCTGGCTGCGTACGT
TCAAGCTTGCACTTGCTAGCCTTTTTTTCTGGAGCGTGAATCGGTCAAAG
CGTCCCCCCCGCCCCCCTCCTCAGTACTACAGCTTAAAGCAGCTGGTAAT
CCTGCTGGAGCACGCGGACGCGCCCATGGTGACGTACATCGCGGCCTGCA
CCAGCAAGGGTGTCAAGTGGGTAGCCTCCATCGAAAAGGCGGACGTGTTG
GCCTACCTCAGGGGGCAAACGGACGATGCCCCTCAGGTGCGTCACGTTTT
GGCTTTCGTCCGGTTCGAAAGTGAAACTGTCACATTTTTTGTTTTTTCTT
TCGTGTGCATAACATGACACCGAAAATCCATCCCTATCCATATAGATTTG
AGGGCCTGGGATGAATTGGTGGTTTGTTTTCCGGGTGGGAGACGCTGTGT
TCTTCCCTTTATACTTGTACCTCCATGCCATCTGCTACGTTTCTGCCGCG
GGTCAATGCAGCACGCCAGGAAACTTGTGTGTCTTCGAACAGGGGCAAGG
ATCGCACCCCTCTCCTTCGCTGTTCTTGCTTTTGGCCGCTTTTTGCGGAC
TGCAGGCAGCGGCCGTCGGTGTGGCTTGGGCGGCACTCTACTCTCTTGTG
ACTCTCTCTGAAAGTTTCGAGTTTGAGAAATCGTGTGATACTGGTCGGTG
CTTCTACTCTCTGAATGTTACACGTTCGATGTGGATGTTCGTGCATCGGA
AGCGTGGCAAACTTTCTAGGCGTCGTTCTGGGCGGAACTGTACCGATGAT
AACTCTCTCCTCTACAACTTTGTGTTCGATTGGGCTGTTGGTTTGTACCT
TTTTTTGTCGTCTACCCACCGCTACTGCCGTTTTTTGTCTCTCGCAGATC
GATAGGACAGCAGCACCGACGTCGTCGGAGAGGGCTAACAAGCGCTCACA
CAACGAGCTCCAAAAAGGTGAGGAGAGAGAAGCAGAGGCAGGTGAAACGG
TCACAGTTCTGCCGCCGCTCGTAGCAGCCGGAGTGGCGTTAGTGTCCAAG
TCGTTTGATCGCCAACCAGAGGCGTCAGCCCCGTGTATGCTCCGCTCACT
TTAGGGTGTACAATTCATTGATTACTCGATGCTGTTTTCCGCCATGAGAT
AAACTTGTTGCATCGCGTCATCCTGTTAACCCACCCGATGTGGAGCGTGG
AGACTGGGGGAAGGCCCAGCCACTTGTTTGTTTCTTGTGTGGTGACCACC
GTTTGCGGGCATGTGCCAAGTTATGCTTCGTTCCCGCCCGGTGAGTGAGT
GACCCGTCCGTTGCACTATTGAACTACAAGTACCGCTCACGTTGGCAACT
TCCTCGTCAGACGATGTATCCCTCGCCGTATTACCCCACCCTCCCAATCG
ATACGTCAGGATAGACAAGCTAGGGACATTTTTGAGCCGCCTTTGGCGAA
GCAGGAAGGGAACGATTGGCCGTCGGTGATCGATCCTGTGAGATCAATGC
TCGGTCCTCTCGAGGACGCGCTTTGTCGAGGGTGTAACCGCTAAGGCATA
CAAAACTTATCAGCACGCCCCTCCCCCCGCCCCCAAGAACAATTATATAT
ATATATATCTGGTTTGGCACAGCAAACACATGGAGGATGACTAGCTTTCC
TTGTGCAACGTAGCCCGGTCCGTCGAAAAACCGGCATGTCGCTCCATCCC
GGCATCACAGGTCAATGGTCTGATGACTACCGCTTGCGCTTACATGAGAG
TACACCGGTCGCCCCGGTGGTCTAGTGGGTAGCCTCGCAGCCTGCTAAGG
GCCAGGTCATGGGTTCGAGTCCCGACAGAGAGAGTTTTTTTCTCACTAAA
TAAATCCTGGTCTAGGATGAAAGCGATGCGCTGCAAAGCTCGTTTGTTAG
GAAACCATAATCGACTTCGTAAGTCGCGAGGGAACGGATTGCTGTACCCT
TCTCGCGATAAAAATACCTCAGGCATGAACCGCAGGAGGGGGTCCAACCC
CCCCCTCCTATGTGACCCCGGTTGGGTCGTCTAGCTAGTAGAAGTGGAGG
ATAGGGGCCAGAGGGGCAGACGACAGAGTCCAATGATGGGAGAAAAACAA
TAAATCAAAAACAAAACCCTACCCCCCAACCCCTATCGACACGAAAACCA
CAATACGTTTGATCTTCAGGCATGACGGATACCGAGATGCGAGAGGCAAA
GAAGGCGCACGCCCAACGCTTGGAGAACCGAGGAGGGGGGGGGAGTCGCG
CGGGGCTGCTGAGCGGACAGGACCCCCTGTTGTCGAGGGGGGAGGGCACG
GGAATCGGCGGGATATCTCAGGACAAGCTGCTGGAGCTTCGGGCCAAGCG
TCTTTCCCACAAGCGAAACACCATTGTGTCGTGA
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Coding sequence (CDS) from alignment at Scaffold_620:85835..89618+

>EsuBft767_3a-0001 ID=EsuBft767_3a-0001|Name=EsuBft767_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_620:85835..89618+ (Ectocarpus subulatus male Bft15b)
ATGGAGGCATTATCGCTGCTGCGGCAATGTACCATGGCGAGGAAGACCGT
GAGGGAGGAGAAAGACCACTACGTTTTTGGCCACAAGAGGGTGCCCAAGG
ACACCCCGACCGCCTGGAAGTCACAAGTGCAGAGCGAGTACTACAGCTTA
AAGCAGCTGGTAATCCTGCTGGAGCACGCGGACGCGCCCATGGTGACGTA
CATCGCGGCCTGCACCAGCAAGGGTGTCAAGTGGGTAGCCTCCATCGAAA
AGGCGGACGTGTTGGCCTACCTCAGGGGGCAAACGGACGATGCCCCTCAG
ATCGATAGGACAGCAGCACCGACGTCGTCGGAGAGGGCTAACAAGCGCTC
ACACAACGAGCTCCAAAAAGGCATGACGGATACCGAGATGCGAGAGGCAA
AGAAGGCGCACGCCCAACGCTTGGAGAACCGAGGAGGGGGGGGGAGTCGC
GCGGGGCTGCTGAGCGGACAGGACCCCCTGTTGTCGAGGGGGGAGGGCAC
GGGAATCGGCGGGATATCTCAGGACAAGCTGCTGGAGCTTCGGGCCAAGC
GTCTTTCCCACAAGCGAAACACCATTGTGTCGTGA
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