EsuBft764_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft764_8a-0001
Unique NameEsuBft764_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:298391..298987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft764_8
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length59
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft764_8aEsuBft764_8aEctocarpus subulatus male Bft15bgeneScaffold_630 298391..298987 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_8a-0001-exonEsuBft764_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 298391..298987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_8a-0001-cdsEsuBft764_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 298391..298891 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_8a-0001-exonagat-five_prime_utr-13661Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 298892..298987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_8a-0001EsuBft764_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 298391..298891 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft764_8a-0001 ID=EsuBft764_8a-0001|Name=EsuBft764_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=597bp|location=Sequence derived from alignment at Scaffold_630:298391..298987- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTAAGATAACGGCGGCGTCGTTCAGCTTTGCCAAGCAAGTTCGGTCGAGG
AGCTGGTTTTCGGATGCGTCAAAGAGAGCATTGGGGGGGGGGTTGCATGG
ATACGAGGGGTTTCTGGAGGTACGAGTTGCCGGAGGAAGTACAAGGAAGG
ACGATCAGGGCGAGGCAGAAGGGAGAAGGGGACTTTATATGCATAAATGT
ACTAGAACTAATGACGATGGTAATGACGGCGTATGTGATGGTAATTTCGA
GGGGGGATAAGCCGGAGCGGGAAGGAGAGGCGGTGATGATGAGGGCGGAC
AATGAGAGCGCCGTGTCGTGGGTGAAGAAGTGGGGGTGGGAGGGGAAGAA
GAAGGCGAGGATAGGGGCACTGATGAGGATGATGGGAGCCTTGAAGACGA
TTGGGGGCTGGTGTTTTCAGACGAGGCATGTACCGGGCGTGGAGAATAGG
GTAGCAGATGGCATAACGAGATGGAAGGAAGAAGAGATCGCTGACAACGT
GCAATCGGAATCGCCCGGAACACGTTGGCAGGTGCAGGAGCTGAAGGCCG
AGGAGCAGCAGCTATGTGCAGAGATTTTGCGTTGTCTTTGCCGTTGA
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protein sequence of EsuBft764_8a-0001

>EsuBft764_8 ID=EsuBft764_8|Name=EsuBft764_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=166bp
MDTRGFWRYELPEEVQGRTIRARQKGEGDFICINVLELMTMVMTAYVMVI
SRGDKPEREGEAVMMRADNESAVSWVKKWGWEGKKKARIGALMRMMGALK
TIGGWCFQTRHVPGVENRVADGITRWKEEEIADNVQSESPGTRWQVQELK
AEEQQLCAEILRCLCR
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mRNA from alignment at Scaffold_630:298391..298987-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft764_8a-0001 ID=EsuBft764_8a-0001|Name=EsuBft764_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=597bp|location=Sequence derived from alignment at Scaffold_630:298391..298987- (Ectocarpus subulatus male Bft15b)
GTAAGATAACGGCGGCGTCGTTCAGCTTTGCCAAGCAAGTTCGGTCGAGG
AGCTGGTTTTCGGATGCGTCAAAGAGAGCATTGGGGGGGGGGTTGCATGG
ATACGAGGGGTTTCTGGAGGTACGAGTTGCCGGAGGAAGTACAAGGAAGG
ACGATCAGGGCGAGGCAGAAGGGAGAAGGGGACTTTATATGCATAAATGT
ACTAGAACTAATGACGATGGTAATGACGGCGTATGTGATGGTAATTTCGA
GGGGGGATAAGCCGGAGCGGGAAGGAGAGGCGGTGATGATGAGGGCGGAC
AATGAGAGCGCCGTGTCGTGGGTGAAGAAGTGGGGGTGGGAGGGGAAGAA
GAAGGCGAGGATAGGGGCACTGATGAGGATGATGGGAGCCTTGAAGACGA
TTGGGGGCTGGTGTTTTCAGACGAGGCATGTACCGGGCGTGGAGAATAGG
GTAGCAGATGGCATAACGAGATGGAAGGAAGAAGAGATCGCTGACAACGT
GCAATCGGAATCGCCCGGAACACGTTGGCAGGTGCAGGAGCTGAAGGCCG
AGGAGCAGCAGCTATGTGCAGAGATTTTGCGTTGTCTTTGCCGTTGA
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Coding sequence (CDS) from alignment at Scaffold_630:298391..298987-

>EsuBft764_8a-0001 ID=EsuBft764_8a-0001|Name=EsuBft764_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=501bp|location=Sequence derived from alignment at Scaffold_630:298391..298987- (Ectocarpus subulatus male Bft15b)
ATGGATACGAGGGGTTTCTGGAGGTACGAGTTGCCGGAGGAAGTACAAGG
AAGGACGATCAGGGCGAGGCAGAAGGGAGAAGGGGACTTTATATGCATAA
ATGTACTAGAACTAATGACGATGGTAATGACGGCGTATGTGATGGTAATT
TCGAGGGGGGATAAGCCGGAGCGGGAAGGAGAGGCGGTGATGATGAGGGC
GGACAATGAGAGCGCCGTGTCGTGGGTGAAGAAGTGGGGGTGGGAGGGGA
AGAAGAAGGCGAGGATAGGGGCACTGATGAGGATGATGGGAGCCTTGAAG
ACGATTGGGGGCTGGTGTTTTCAGACGAGGCATGTACCGGGCGTGGAGAA
TAGGGTAGCAGATGGCATAACGAGATGGAAGGAAGAAGAGATCGCTGACA
ACGTGCAATCGGAATCGCCCGGAACACGTTGGCAGGTGCAGGAGCTGAAG
GCCGAGGAGCAGCAGCTATGTGCAGAGATTTTGCGTTGTCTTTGCCGTTG
A
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