EsuBft764_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft764_7a-0001
Unique NameEsuBft764_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:287772..291355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog946362.XP_004988914.1
ProteomeIdEsuBft764_7
Protein domainsIPR012816
Protein domainsIPR000477
Protein domainsG3DSA
Protein domainsSSF143990
Protein domainsPTHR11079
Protein domainsSSF56672
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl33154|Opisthokonta
Length2199
Hectar predicted targeting categoryother localisation
Evalue8.85e-63
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta
Date last modified2016-06-14
Date creation2016-06-14
Descriptionretrotransposable element Tf2 155 kDa protein type 1-like
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft764_7aEsuBft764_7aEctocarpus subulatus male Bft15bgeneScaffold_630 287772..291355 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_7a-0001-exonEsuBft764_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 287772..288908 -
EsuBft764_7a-0001-exonagat-exon-61816Ectocarpus subulatus male Bft15bexonScaffold_630 288972..289183 -
EsuBft764_7a-0001-exonagat-exon-61815Ectocarpus subulatus male Bft15bexonScaffold_630 290458..291251 -
EsuBft764_7a-0001-exonagat-exon-61814Ectocarpus subulatus male Bft15bexonScaffold_630 291300..291355 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_7a-0001-cdsEsuBft764_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 287772..288908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_7a-0001EsuBft764_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 287772..291355 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft764_7a-0001 ID=EsuBft764_7a-0001|Name=EsuBft764_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2199bp|location=Sequence derived from alignment at Scaffold_630:287772..291355- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACACTCGGAGCCAGCGGACCTCCGACTGTCGGCCACTTGATTCA
GCGCCTAGCTCTCGATCACCGACAGCCTCACGAGACTGCCTTTGATGCCA
CACGAGAGTACGTCAATAATATCGTCATTCTTTTCTGGCAACCGCCCTCC
ATTTTTTCGCAATGGACACCTTCGACATTTTCGGTCGATGGAGTGGAATA
CTCCTGTGCCGAACAATTCTTCGCAGCATCCAAGGCACGACACTTCGGTG
ACAAAGATATGCTTCACAACATCATGCTTTCTTCAGACCCAGCAATGCAC
AAGCTCTACGGACGACAAGTGCGTGGCTTCACGCAACAGGCATGGGAAAA
GGTGAAAGCATACATCGTGCTTGTGGGCACTTTGGAGAAATTCTCCCACA
ATCCTGCCATGCGTCAATATCTTCTCAAGACAGGCAACAGCATTTTAGCC
GAAGCCAGCCCTTTCGACAATACAAGGGGCATCGGCATGAGAGCCGATCA
CCCCGAGGCCGCCAACCCCTCCAACTGGACAGGCAAAAATTTACTTGGTA
AGGCACTTCAATCGGTTAGAGACTTGCTTCGCTCCTCTGCATCACTCCCG
ATGCCGCCACTGGAACAACCCACCGACTCAGCACTCGACAATAACGGCAT
TCACGAGATCAACACCGACACTCAGCAACCCATCCATCCACCTTTAGAGT
CACGTCCACAGCCAACCGACATCAACGCTCTTTGGCCCTCTGACGCGCCT
TCCGACTACGACGACGACATTCTCCACATTGCGGACGCCAATTTCCACGT
CGACAATCACCCCAAACTACTTGCGGAACACGGACCATGTCTCGTCGACG
GTTTAATCCAACACTCCACTTCTCCGTACTGCAGCCCCATCGTCTTCATT
CCAAAAAAATCTGGAGGGCTTCGCATCACCGTCAACTACCAGAAACTCAA
CCGCATCAGCAGCTTCAGTCAACTACCTGTTCCTCGTGTCGATGAGATCA
TGAACAAACTGCACCAGGGCTCCATCTTCTCGCTCTTCGACTTCACGGGC
TCCTTCCACCAATGGCTCAAAATGCCAATGGGTGCCAGCCAATCTTCAGG
CTGGTGGATGAAGGTCATCAATGAGGTAATAAAAAACCTCGAAGGCGTCG
ACGCATATCTCAACGATGTGGTGCTCTACGACAAGACACCGGCGGATCAT
ATCCTCACCATGCGCGCCCTCCTACAACGGCTGCGCAAGCACAAGCTCAA
GCTTTCACCGCCTAAGGCCACCATTGGCACGACAAACTCTGCATTCTTGG
GACACACCATTACTCCCGACAGTATCAGGCCCAACGCCAACAAAGTAGCC
GCGCTCGCGGCTATGCCAATGCCAACCGACCTCAAGAAACTTCACTCTCT
TCTCGGTGGTCTGAGCTACTACCGCAGCTTCGTCAAAAACTTGTCTAAAC
GAGTACGCCCCGTCACGACACTCAAGAAAAACTCGTTCTTCACCTTTACC
TCCGACATGGAAGCCATCGTCCGAGAGATCCTCAAAGAACTCTTCGAGCC
GCCAATTCTCGTCTTCCCCGACTGGAAAGCCATCGAAGACGGCACCAGAC
CTCTCCGCCTCCACTGCGACGCCAGCCTCGATGATCTGGGAGCGACACTA
AAACAAGAACAGGCGGATGGCTCTGTTCGCCCCATCGTCTTCATCAGCAG
ATCGACACTTGACGCTGAGCGTAACTGGACACCACTCGACTTGGAAGCTG
GCGCCATCGTTTGGGCCATTAAACGCTTGCGTAGATACTTGCGCGGCACA
CACTTCCAAATTTGGACCGACAATCAAGCTCTGGAGAACATCTCCAAGGT
GGGAGACCACAGCCCACGCGTGCAGCGTTGGCTTGAGTCCCTCACAGCGT
ATCAATACACGCTGAAACACCGCCCAGGCTCCTCCAACAGCAACGCCGAC
ATGCTGTCTAGACTGCCCATACCCCCCAGTACACAGGACATCACAGGATA
TAGCCGCATCACCATGCCAGATGATGTGGGTGTCTACATGATTCGCGCCA
CCGGCAACATTCCTTCTGGTCCTTCTCCACAGGGTATTACTTTGGGTGGG
CTAGTACCCAACAATGGCAGCGACACTTTGAGTGGCTCCCCACTGACGTC
GGCGGATTTCCAGGATTTTTCGCCGGCGCGGGCTCTGAATGAGCATTGA
back to top

protein sequence of EsuBft764_7a-0001

>EsuBft764_7 ID=EsuBft764_7|Name=EsuBft764_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=732bp
MTTLGASGPPTVGHLIQRLALDHRQPHETAFDATREYVNNIVILFWQPPS
IFSQWTPSTFSVDGVEYSCAEQFFAASKARHFGDKDMLHNIMLSSDPAMH
KLYGRQVRGFTQQAWEKVKAYIVLVGTLEKFSHNPAMRQYLLKTGNSILA
EASPFDNTRGIGMRADHPEAANPSNWTGKNLLGKALQSVRDLLRSSASLP
MPPLEQPTDSALDNNGIHEINTDTQQPIHPPLESRPQPTDINALWPSDAP
SDYDDDILHIADANFHVDNHPKLLAEHGPCLVDGLIQHSTSPYCSPIVFI
PKKSGGLRITVNYQKLNRISSFSQLPVPRVDEIMNKLHQGSIFSLFDFTG
SFHQWLKMPMGASQSSGWWMKVINEVIKNLEGVDAYLNDVVLYDKTPADH
ILTMRALLQRLRKHKLKLSPPKATIGTTNSAFLGHTITPDSIRPNANKVA
ALAAMPMPTDLKKLHSLLGGLSYYRSFVKNLSKRVRPVTTLKKNSFFTFT
SDMEAIVREILKELFEPPILVFPDWKAIEDGTRPLRLHCDASLDDLGATL
KQEQADGSVRPIVFISRSTLDAERNWTPLDLEAGAIVWAIKRLRRYLRGT
HFQIWTDNQALENISKVGDHSPRVQRWLESLTAYQYTLKHRPGSSNSNAD
MLSRLPIPPSTQDITGYSRITMPDDVGVYMIRATGNIPSGPSPQGITLGG
LVPNNGSDTLSGSPLTSADFQDFSPARALNEH
back to top

mRNA from alignment at Scaffold_630:287772..291355-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft764_7a-0001 ID=EsuBft764_7a-0001|Name=EsuBft764_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3584bp|location=Sequence derived from alignment at Scaffold_630:287772..291355- (Ectocarpus subulatus male Bft15b)
ATGACGACACTCGGAGCCAGCGGACCTCCGACTGTCGGCCACTTGATTCA
GCGCCTGTAACAGCGCCATCAACTGAGCCACGACAATGTAAGCACTCTCC
TCAGAGCTCTCGATCACCGACAGCCTCACGAGACTGCCTTTGATGCCACA
CGAGAGTACGTCAATAATATCGTCATTCTTTTCTGGCAACCGCCCTCCAT
TTTTTCGCAATGGACACCTTCGACATTTTCGGTCGATGGAGTGGAATACT
CCTGTGCCGAACAATTCTTCGCAGCATCCAAGGCACGACACTTCGGTGAC
AAAGATATGCTTCACAACATCATGCTTTCTTCAGACCCAGCAATGCACAA
GCTCTACGGACGACAAGTGCGTGGCTTCACGCAACAGGCATGGGAAAAGG
TGAAAGCATACATCGTGCTTGTGGGCACTTTGGAGAAATTCTCCCACAAT
CCTGCCATGCGTCAATATCTTCTCAAGACAGGCAACAGCATTTTAGCCGA
AGCCAGCCCTTTCGACAATACAAGGGGCATCGGCATGAGAGCCGATCACC
CCGAGGCCGCCAACCCCTCCAACTGGACAGGCAAAAATTTACTTGGTAAG
GCACTTCAATCGGTTAGAGACTTGCTTCGCTCCTCTGCATCACTCCCGAT
GCCGCCACTGGAACAACCCACCGACTCAGCACTCGACAATAACGGCATTC
ACGAGATCAACACCGACACTCAGCAACCCATCCATCCACCTTTAGAGTCA
CGTCCACAGCCAACCGACATCAACGCTCTTTGGCCCTCTGACGCGCCTTC
CGACTACGACGACGACATTCTCCACATTGCGGACGCCAATTTCCACGTCG
ACAATCACCCCAAACTACTTGCGGAACACGGACCATGTCTCGTCGACGGT
ATTGTAAACGTTGACGACGCTTCACAATCCACCAAAGTGCGCACACACTC
AGGTTCCGCAACCTCAGGTTACCGCTGCGGCGCTCTCCTGGACTCCGTCT
CTCCAGCCACCTTCGTCAAGAGCAATGCTCTCGGCACCATGCGAGCCACA
GGATGTGCGACACAAGACTGCGTCGCCACCAACAACACTCGCTCTTGGGG
AGGATTCGGCAGCTTTCAACCGCTCGTCACTAATCAGGTGGTACCTCTCA
GTGTTCAATTTTATCAAAAGGACCAACCCACTGCTTCACTCGCCGTCTGG
GCTCATGTAGTTCCAGCCAACACCATGCAACAGCCACTTTCACTAGGACG
CGACAGCTTCATGCGCTACACCACCCGCACCTACACCGTGCTACCTACGC
GTTCTCCAACCCAACGCGTGCTGGGAGAATATGCTTTCTCTCACCACCAA
GCCTGCGGCGCCTCAGCCTACATTCGAGATCCCTCTGCAGCTCCAGGAAG
ATTCCACCTCAAATACGCTGGAAAATCTGGAATATCTCTCTCGTCAAATC
ACCAATTGATCGAGGTCAACCTCGTCCGTGCCAATGGGTACCCTGCTCTC
AAAGGACACTACCTGGTAGACACTGTTCCAGATTTGTCCCCTTCAGACGA
ACTCTTCGTCTCTCACGGCCGCCAGTTTCTACCACTCGTAGGATGCGCAG
AGCTTGAACCGGGCGACATTTTAGGTACAGCAGCCGCCCCTTTCATGCGC
GTATCTGTCGACACTATTCAACAATTCAGTGACAAGCAACCGTCAAAGCA
CTTCGAAGTGCCAGGGCCATCACACTCTGCCGATGCAGCACACTGCAATG
ATCCCTTCATCGGCAATGTATCTACCGACAATAACGGGGGACCTGCACAG
CACTCCTCCCCCCCTTCCGGCAATTCGTCCCCACCGACACTTCCTCCACA
GGAGCTTCTGGACCGCTTAGATGCCGCTCAACAGAAAAGCTTCTTATCTC
TTTGGGACCTCCTACCACCGCACATGCGAGCCATCACGTTCAATCTACAC
GGCGAAGGCTGGACGCCTGCTGTCATAGATGAGCTCGCTGATGTCTTACA
CAACTTCCGAGACATCTTCTCCACTTCACCCACGGACTGAGCTGCTGCCC
ATTGCTACCATTCAAAATCGACATTCCGGACGGCACCCCACCGGTGCGAA
CCAAGCCATACCGCATGAACCCTCTGTTCGCCAAACAAGTGGACGCCATT
TTGGACAAATACCTCGCGGCAGGTTTAATCCAACACTCCACTTCTCCGTA
CTGCAGCCCCATCGTCTTCATTCCAAAAAAATCTGGAGGGCTTCGCATCA
CCGTCAACTACCAGAAACTCAACCGCATCAGCAGCTTCAGTCAACTACCT
GTTCCTCGTGTCGATGAGATCATGAACAAACTGCACCAGGGCTCCATCTT
CTCGCTCTTCGACTTCACGGGCTCCTTCCACCAAGTTCCCGTGCACCCCG
ACACAATTCCGCTCACTGCATTCGCCACACCGACTCGCCTTTTCTAGTGG
CTCAAAATGCCAATGGGTGCCAGCCAATCTTCAGGCTGGTGGATGAAGGT
CATCAATGAGGTAATAAAAAACCTCGAAGGCGTCGACGCATATCTCAACG
ATGTGGTGCTCTACGACAAGACACCGGCGGATCATATCCTCACCATGCGC
GCCCTCCTACAACGGCTGCGCAAGCACAAGCTCAAGCTTTCACCGCCTAA
GGCCACCATTGGCACGACAAACTCTGCATTCTTGGGACACACCATTACTC
CCGACAGTATCAGGCCCAACGCCAACAAAGTAGCCGCGCTCGCGGCTATG
CCAATGCCAACCGACCTCAAGAAACTTCACTCTCTTCTCGGTGGTCTGAG
CTACTACCGCAGCTTCGTCAAAAACTTGTCTAAACGAGTACGCCCCGTCA
CGACACTCAAGAAAAACTCGTTCTTCACCTTTACCTCCGACATGGAAGCC
ATCGTCCGAGAGATCCTCAAAGAACTCTTCGAGCCGCCAATTCTCGTCTT
CCCCGACTGGAAAGCCATCGAAGACGGCACCAGACCTCTCCGCCTCCACT
GCGACGCCAGCCTCGATGATCTGGGAGCGACACTAAAACAAGAACAGGCG
GATGGCTCTGTTCGCCCCATCGTCTTCATCAGCAGATCGACACTTGACGC
TGAGCGTAACTGGACACCACTCGACTTGGAAGCTGGCGCCATCGTTTGGG
CCATTAAACGCTTGCGTAGATACTTGCGCGGCACACACTTCCAAATTTGG
ACCGACAATCAAGCTCTGGAGAACATCTCCAAGGTGGGAGACCACAGCCC
ACGCGTGCAGCGTTGGCTTGAGTCCCTCACAGCGTATCAATACACGCTGA
AACACCGCCCAGGCTCCTCCAACAGCAACGCCGACATGCTGTCTAGACTG
CCCATACCCCCCAGTACACAGGACATCACAGGATATAGCCGCATCACCAT
GCCAGATGATGTGGGTGTCTACATGATTCGCGCCACCGGCAACATTCCTT
CTGGTCCTTCTCCACAGGGTATTACTTTGGGTGGGCTAGTACCCAACAAT
GGCAGCGACACTTTGAGTGGCTCCCCACTGACGTCGGCGGATTTCCAGGA
TTTTTCGCCGGCGCGGGCTCTGAATGAGCATTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_630:287772..291355-

>EsuBft764_7a-0001 ID=EsuBft764_7a-0001|Name=EsuBft764_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2199bp|location=Sequence derived from alignment at Scaffold_630:287772..291355- (Ectocarpus subulatus male Bft15b)
ATGACGACACTCGGAGCCAGCGGACCTCCGACTGTCGGCCACTTGATTCA
GCGCCTAGCTCTCGATCACCGACAGCCTCACGAGACTGCCTTTGATGCCA
CACGAGAGTACGTCAATAATATCGTCATTCTTTTCTGGCAACCGCCCTCC
ATTTTTTCGCAATGGACACCTTCGACATTTTCGGTCGATGGAGTGGAATA
CTCCTGTGCCGAACAATTCTTCGCAGCATCCAAGGCACGACACTTCGGTG
ACAAAGATATGCTTCACAACATCATGCTTTCTTCAGACCCAGCAATGCAC
AAGCTCTACGGACGACAAGTGCGTGGCTTCACGCAACAGGCATGGGAAAA
GGTGAAAGCATACATCGTGCTTGTGGGCACTTTGGAGAAATTCTCCCACA
ATCCTGCCATGCGTCAATATCTTCTCAAGACAGGCAACAGCATTTTAGCC
GAAGCCAGCCCTTTCGACAATACAAGGGGCATCGGCATGAGAGCCGATCA
CCCCGAGGCCGCCAACCCCTCCAACTGGACAGGCAAAAATTTACTTGGTA
AGGCACTTCAATCGGTTAGAGACTTGCTTCGCTCCTCTGCATCACTCCCG
ATGCCGCCACTGGAACAACCCACCGACTCAGCACTCGACAATAACGGCAT
TCACGAGATCAACACCGACACTCAGCAACCCATCCATCCACCTTTAGAGT
CACGTCCACAGCCAACCGACATCAACGCTCTTTGGCCCTCTGACGCGCCT
TCCGACTACGACGACGACATTCTCCACATTGCGGACGCCAATTTCCACGT
CGACAATCACCCCAAACTACTTGCGGAACACGGACCATGTCTCGTCGACG
GTTTAATCCAACACTCCACTTCTCCGTACTGCAGCCCCATCGTCTTCATT
CCAAAAAAATCTGGAGGGCTTCGCATCACCGTCAACTACCAGAAACTCAA
CCGCATCAGCAGCTTCAGTCAACTACCTGTTCCTCGTGTCGATGAGATCA
TGAACAAACTGCACCAGGGCTCCATCTTCTCGCTCTTCGACTTCACGGGC
TCCTTCCACCAATGGCTCAAAATGCCAATGGGTGCCAGCCAATCTTCAGG
CTGGTGGATGAAGGTCATCAATGAGGTAATAAAAAACCTCGAAGGCGTCG
ACGCATATCTCAACGATGTGGTGCTCTACGACAAGACACCGGCGGATCAT
ATCCTCACCATGCGCGCCCTCCTACAACGGCTGCGCAAGCACAAGCTCAA
GCTTTCACCGCCTAAGGCCACCATTGGCACGACAAACTCTGCATTCTTGG
GACACACCATTACTCCCGACAGTATCAGGCCCAACGCCAACAAAGTAGCC
GCGCTCGCGGCTATGCCAATGCCAACCGACCTCAAGAAACTTCACTCTCT
TCTCGGTGGTCTGAGCTACTACCGCAGCTTCGTCAAAAACTTGTCTAAAC
GAGTACGCCCCGTCACGACACTCAAGAAAAACTCGTTCTTCACCTTTACC
TCCGACATGGAAGCCATCGTCCGAGAGATCCTCAAAGAACTCTTCGAGCC
GCCAATTCTCGTCTTCCCCGACTGGAAAGCCATCGAAGACGGCACCAGAC
CTCTCCGCCTCCACTGCGACGCCAGCCTCGATGATCTGGGAGCGACACTA
AAACAAGAACAGGCGGATGGCTCTGTTCGCCCCATCGTCTTCATCAGCAG
ATCGACACTTGACGCTGAGCGTAACTGGACACCACTCGACTTGGAAGCTG
GCGCCATCGTTTGGGCCATTAAACGCTTGCGTAGATACTTGCGCGGCACA
CACTTCCAAATTTGGACCGACAATCAAGCTCTGGAGAACATCTCCAAGGT
GGGAGACCACAGCCCACGCGTGCAGCGTTGGCTTGAGTCCCTCACAGCGT
ATCAATACACGCTGAAACACCGCCCAGGCTCCTCCAACAGCAACGCCGAC
ATGCTGTCTAGACTGCCCATACCCCCCAGTACACAGGACATCACAGGATA
TAGCCGCATCACCATGCCAGATGATGTGGGTGTCTACATGATTCGCGCCA
CCGGCAACATTCCTTCTGGTCCTTCTCCACAGGGTATTACTTTGGGTGGG
CTAGTACCCAACAATGGCAGCGACACTTTGAGTGGCTCCCCACTGACGTC
GGCGGATTTCCAGGATTTTTCGCCGGCGCGGGCTCTGAATGAGCATTGA
back to top