EsuBft764_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft764_3a-0001
Unique NameEsuBft764_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:248218..253461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FPS1
ProteomeIdEsuBft764_3
Protein domainsIPR016040
Protein domainsIPR003781
Protein domainsSSF51735
Ownerapollo_admin@sb-roscoff.fr
NoteUncharacterized protein YccU OS:Escherichia coli (strain K12) GN:yccU PE:1 SV:2 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length714
Hectar predicted targeting categoryother localisation
Evalue2.55e-92
EggNOG OGs2CYF6@1|root,2S3ZG@2759|Eukaryota
Ec32 ortholog descriptionCoA-binding
Ec32 orthologEc-18_001500.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionCoA binding domain
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0048037
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft764_3aEsuBft764_3aEctocarpus subulatus male Bft15bgeneScaffold_630 248218..253461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_3a-0001EsuBft764_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 248341..250290 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_3a-0001-exonagat-exon-61792Ectocarpus subulatus male Bft15bexonScaffold_630 248218..248505 -
EsuBft764_3a-0001-exonagat-exon-61793Ectocarpus subulatus male Bft15bexonScaffold_630 248949..249031 -
EsuBft764_3a-0001-exonagat-exon-61790Ectocarpus subulatus male Bft15bexonScaffold_630 249325..249469 -
EsuBft764_3a-0001-exonagat-exon-61791Ectocarpus subulatus male Bft15bexonScaffold_630 250204..250350 -
EsuBft764_3a-0001-exonEsuBft764_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 253411..253461 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_3a-0001-exonagat-three_prime_utr-21213Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 248218..248340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_3a-0001-cdsEsuBft764_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 248341..248505 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_3a-0001-exonagat-five_prime_utr-13658Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 250291..250350 -
EsuBft764_3a-0001-exonagat-five_prime_utr-13659Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 253411..253461 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft764_3a-0001 ID=EsuBft764_3a-0001|Name=EsuBft764_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=714bp|location=Sequence derived from alignment at Scaffold_630:248218..253461- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGTCGCACCCAGATCCCCGACTCTGTACAAGGAGACCTCTTATCAACA
AGAAATTCACACAAGAAGGCACGCCTTTTCATCCGATTCGCTCCCGGTGA
AGAAGTCGTAGATGAATACGCTTGTCAGGAACTTTCTGGCCGCGGACCGG
TTCGCCGTCGTCGGCGCGTCCACCAATAGGAGCAAGTTCGGCAACAAGGT
GCTGCGGTGCTACCTGTGGCGGGAGAAGACGGTCTTCCCTGTTAACCCAC
GCGAGGAGGAAATCGAGGGGAAGAAGTGCGTCAAGTCGCTCTCTGACCTT
GCGGACCCGCAAGACGTGTCCGTTTCCGTCGTCACTCCCCCGGCGGTGAC
TCTTGGCGTTGTCGAGGAGGCCGGGCGCCTGGGCGTGAAGAGGCTGTGGC
TCCAACCGGGGAGCGAGAACGACGAGGTCTTGTCGAAGGCCGAGGAATTG
GGCCTGCAAATCATCCACGGGGAGCCTTGCGTTTTGGTAGAGCTCGGCTA
CTACGCACCCGGTGGCCTGGGCAGCAGCAGCAGCGACGGCGGTGAGGGCA
GCGGCGGCGGCGGCGGTAGCGGCAGCGGCAGCAGCCTGTAGACGCTGAGC
AAGCGGGCCACAACAAAGGGTTTTGGTAGGCAAATAGACGGGGGTTTTGT
GTCAAACTTATCTCGCTGGCGGCGGCTGGAGTGGAAGGTTAGTTTCGACA
TTTTGTGTGATTGA
back to top

protein sequence of EsuBft764_3a-0001

>EsuBft764_3 ID=EsuBft764_3|Name=EsuBft764_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=159bp
MNTLVRNFLAADRFAVVGASTNRSKFGNKVLRCYLWREKTVFPVNPREEE
IEGKKCVKSLSDLADPQDVSVSVVTPPAVTLGVVEEAGRLGVKRLWLQPG
SENDEVLSKAEELGLQIIHGEPCVLVELGYYAPGGLGSSSSDGGEGSGGG
GGSGSGSSL
back to top

mRNA from alignment at Scaffold_630:248218..253461-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft764_3a-0001 ID=EsuBft764_3a-0001|Name=EsuBft764_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5244bp|location=Sequence derived from alignment at Scaffold_630:248218..253461- (Ectocarpus subulatus male Bft15b)
TGTGTCGCACCCAGATCCCCGACTCTGTACAAGGAGACCTCTTATCAACA
AGTGAGTGCAGCAGGGCGTCGTTTGTTGATCCCTCATGGCGACTCCATCC
AAGGACGCGCCTCGGCAGGTTCTGAGCGTCTCACGCGTCTGACTGTTTGA
TTTTCTCTTGAGATGCAAATGCCTCCTTTCTGGTTCTAGGGGTTCGCCTG
TGCTCGCCCTCTGAATCACGTGACTCTTCTCCTGCCTTGTTGTAGGGTTT
TGTGTGCGCGCCATCAGCTCATGACGAGTAGGAGTGCAAGGAGGGTGGTG
GAGCAGCGGTTCATGTATGTAAAACCAAACGACTTTGTTGCCCATGGCAG
TACAAGAGCATAATGCACCAGCTGGCAAAGAACTATCTACCCGAATCTGA
CAGTCCCGTTAGCACTCTCTCAGTCTCTCCTCTCTTCCCCGTTTGATCCA
GTGCCTGCGGAGCGGTGGGGGTTGGTGTTTTGGGAAAGCTCTCCTTGTTT
ATCGCTTCATTGGGTGGAGCTAGCCCTTGTTGTAGCTGTGCCTTGTTGTA
TTTGTGAAATGGGGCAGCCCGGGCAAGGCGGGCCGAGACGCATTTAAGGC
ACCTCATACCGTAAGACGAATGCAGGACCAGACTACAACTGGAAACGATT
TAAAAAGTTGGAAATGGATCCTTAGGTGCGAGCCTGGCGTGTACGATGAA
CGCACGAAAAGTGTCCGCAACAAAGGAATGTTAATGTTCAATAAGTGCAC
TCAAGCAGGATTTTCCAACCCAACCGCGTGCTGTGGATATCTGCCCAATA
TCCATCCATCATGATCTGGTATGCCTGTGTATTGCCAAGGAATTGCCACG
TGTTATACAATGTAGGAGACCCGAAGATGGAGTCAGGTGTTTATTGTCTC
TTGCGGGACAGCGGTGCTTGCTCCGCCTTGCTGTTCGGTAGGGCTGAGCA
GAAGCTGTTGAGATCCGTCCCCCAATACAATCCCATAACATACGAGTGTA
CTAGGGTAAGGGGACCGCCGGCCGATTTTAAGGGTACCCAGACAAGGGAT
TTTGACGCTGGCTCTTTTCTCATACTTTATAACAGTACAAAGAAAGAAAA
CAACCTTCCCGCCGGAGGAACCTGGTCCGTTGTGCTAGTATCAGTAGAGG
ATATCATCAAGAGGCGTCGTGCGTGCTGGCACGTTCAGGTATACTACTGG
GGCTGAAATATCGAAGGTCGCAGCAGCCTCTGAAAACGGTCCGAAATCTG
CGCCGGAACCAAGCGGAACCCAACACTTGTCACAGCGGTGCTCACCACCA
CGGACCGCAAACCCCTCAACTGCGGGTTGTCAGCAGTAGCTGGTGGCATC
AGCTACTGCTGTAAACCTGCAGTTCAGAAGATTGGGTTCAGTGGCGGCGA
GCACAAGCAGTACAAGACACTGGGTGTCGATCTAACTTGCGGAGATTTGC
GGAGATTGTGGGCCACTACAACGACACTCGATACCACCACCACAGAAGAA
GTTTTGAGCGCGCCAACACACCCCCCCGCTGCTATAGGGTGTCCTCTAGT
GATATTGGTACAATGGACCAGGTTCCTAGCAACACCGGCCTTATTTGAGC
GCCTTCCGTTTGGGCTCTTTTGACTTGAATTAATACTGGTGTGGATTTTT
ATCTTGGTTTCAAAGGATGCGTGTGGAGGTAGTCGCGCGAAAAGCACGTT
TTGAGCGGTCTCTACTGCTGCCCTGTGCCAGAATTTTGGACTTGTTTTTT
TTGCGATGCCTTCCGACTGGTCTTATGTGTCTCTAGTGCATTTTCTGGCG
CTCTTGCGTTTGTTTTCGAAATTAGGCAACATATTTGTCCGGGTACCCTT
AATTAGGCGGGACGGCCGCTTGGTGGTAAAATCACCGCCCGCACATTAGC
AGGGACGGACACCGGTAAACATGATGTACAAAAACGAGACGGTGAAAAAT
GGTTGGAAGTGGGATGACTTTGCGTCCTAGGAACATACAATGATAATGAT
GGTCCGTGTGTCGAACATAATGATATATTTGGAGTTAGGTGAAATATGTA
GGAACGGGACGGCAAAGGTGATGAACGAGAACAAGAGCTATACATATGTA
TGTGTTGATTCTTAGCATCGACGACGATACCCGGCTGATCAATGAGACGA
CAGACGACAGTCTCAGTGCGGTTGAAAACACACAACGCTTGTAAATGCCC
ATGGACTGGGATTTTGCGAGGTGGCGGCGTGGAGGAGGCAACCCGTCCAA
AGTTTCCTGCGGAGCCCTTACTGGCAACGACGTAACGACATGAAAACAAT
CCCGTATCTGATGCATCCGACAAACCACAACGGCATCTACACGACCATGA
TTGAAATCGACGCCGTCAATGGCGTCACCCGCCTTGTCTGAAATATCAAC
AAGTGCAGATACACCGTTGACACAGAGCTCGATCCTGCGCAATGCCGAGA
AAGGAAGACCGGTGCTCCCACCAAGGGCAACGAGCAACGCGGGGCTAATG
CTGTCTGGCGAAATCAGTATATCTAGTGAGAATCACCCTCAACCTTGAGA
GGGTTTGCTGGAGATGTCCTTGGAAGGCTTCATTGTAGAGAGGAGTGTTG
GTTAGCCTTATTTTTGCGCTGTTACCAGGGGAGCAAAACAGGCACACAAG
AAAAGAGGAAGGGTATGTGATGACGTAGCATGATGAACAGTCAATGGCAT
ATTGGCAAAGTCTCACGGAGCAAAGCAGGTGAAACATGTAAGTTGGCGAG
TAGTGTGCGGTCATGCACTTGGTCTGTGAAAGTAAAAAATGGATGAAATG
ATGCAGAAGAGAACGGAGTGGCAACACGTTAGGTGGACAAAACGGAGTTC
AAATAGCAGAAAAAAATATGTTGTAGAATATCGGAAACGATTGGTAGCTG
AGTCCAGCAAAATACCTCCTCTTCCTGATCTCCCCCCTTTACCGCTCTGT
TCTTCCTCTGATGGGCTTATTCCCCACTGTCACATTGCCAGGATTTGAAT
CAAATGACTTTGACAATAACAAAAAACGTTGGGCGTGTACCCCGCGCTGC
AAGACCCATCTGCAAGCACGTGTGCTCAAGGCAGTTCCCCCCTCGCTCTG
TCTGTCATCAGGAAATTCACACAAGAAGGCACGCCTTTTCATCCGATTCG
CTCCCGGTGAAGAAGTCGTAGATGAATACGCTTGTCAGGAACTTTCTGGC
CGCGGACCGGTTCGCCGTCGTCGGCGCGTCCACCAATAGGAGCAAGTTCG
GCAACAAGGTGGACAAGTTACATCGATGGACGTCAACCATAACTCCGGAG
TATTTCACATGCGCCATCCTTTCCTCCCGCACCCGCAACAAGCGCAAATG
GCCTTTCTTGGATCCGTTGTATAGACTACAGATCCTCCAGTCTTGAGAGA
AACAGAGAATAAGTATACGTGGATACTCTTGCTCTTTGCATGGGGGAATC
AGGCGCGCACATAATCGACTTCGTAAGTCGCGAGGGAAGGGGTTGCTGTA
CTCTTCTCGCGATAAAAATGTCTCAGGCAGGAACCGCAGGAGGGGGTCCA
ACCCCCCCTCCTGTGTGACCCCGGTTGGGTCTTCTAGCGAGTAGAAGTGG
AGGATAGGGGCCAGAGGGGCAGACAACAGAGTCCAATGATGGGAGGAAAA
ACAAACAAACGCGACATCGAGTTTCTTGGGAGCAACGCTCCTGGGAATTT
CCATGCCGGAAATGGTGCCCTCTGATTGTCTTCCCGAGCACCACGTCGTC
GTTTTCTCGACACCGTTGTCGATCACGTGTTGGATTGGATCCGGCGGACC
AAGAGCTCTTGTTTTTGGCTGCCCGCATAGTGAACACGCTGGCAATCGCC
AGAGTCACGTGCGTGACCGCGCCGGCACGACCGGTTGCACTTACCCGTGG
CCGTCTCCGCCGACAATAACCTCGTCGTCGGGTCGTCGCATGCCGTTTCG
GCGTGCCGTTTCGGCGTGCGTGCGGCGTAACTGCTGCTGCAGGTGCTGCG
GTGCTACCTGTGGCGGGAGAAGACGGTCTTCCCTGTTAACCCACGCGAGG
AGGAAATCGAGGGGAAGAAGTGCGTCAAGTCGCTCTCTGACCTTGCGGAC
CCGCAAGACGTGTCCGTTTCCGTCGTCACTCCCCCGGGTGAGCTAGAGAG
GGAGGGGAGGGCTCTCTCTTGGGTGGTGCGATGGGATAGGTATCCTTACC
TCCTGCTGCCGACACTGCTGCAGAAGAGCCATGCTCTTGCCCTTTGTGAC
GAAGTATTTGTGAAGGGTAATGGTGCATTCAAAAGTTGTATTCAGACCAG
TCTAGTAGTACCACGCTGCATAGAGTGGACGACCTACATTGCACCGCGCG
CTGCGAACAATCTTGAGGAAACGTGACCGCGGAAGCTTCTGAACCAACGC
GCGTGTTCTCGTCCTTATGATTCCTGTCAGCGGTGACTCTTGGCGTTGTC
GAGGAGGCCGGGCGCCTGGGCGTGAAGAGGCTGTGGCTCCAACCGGGGAG
CGAGAACGACGAGGTGTGTGATGTGTCTTAATATCCGAGGTAACGATGCC
GAAGGTGTTCAAGGTGTTGCCGATTGATGATCGAGCAACCGTGTGCTGCC
CATCGCAAATCCTGTAGCAACCATTGTTTGGCGCACATCACATGGATGTA
GCGGGCTCCATTGATGATCGATCACTCGTGTTCTGCCCATCGCAAATCCT
GCTGTAGCAGCCATTGTTTGGGGCACACCACTGGTCGGCATTACGTAGTG
TGCCTCCATGCCTCTGCTCCATACCTCTCCAAGCTAAACCCCGCTACAGG
AACATGAACACGGCGGTGGGATGGTTGAGCAGGGATCGGTGCTATCGCCC
CCCATGTGTATAGGGTGTGTTCTGGCGCGGGGATTTGCGTAACGGGATAG
TAGAGCTTGGCTGCCGTGGAATACTGAATAACGATGTCTTGTGCGCACAA
ATACAGGTCTTGTCGAAGGCCGAGGAATTGGGCCTGCAAATCATCCACGG
GGAGCCTTGCGTTTTGGTAGAGCTCGGCTACTACGCACCCGGTGGCCTGG
GCAGCAGCAGCAGCGACGGCGGTGAGGGCAGCGGCGGCGGCGGCGGTAGC
GGCAGCGGCAGCAGCCTGTAGACGCTGAGCAAGCGGGCCACAACAAAGGG
TTTTGGTAGGCAAATAGACGGGGGTTTTGTGTCAAACTTATCTCGCTGGC
GGCGGCTGGAGTGGAAGGTTAGTTTCGACATTTTGTGTGATTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_630:248218..253461-

>EsuBft764_3a-0001 ID=EsuBft764_3a-0001|Name=EsuBft764_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=480bp|location=Sequence derived from alignment at Scaffold_630:248218..253461- (Ectocarpus subulatus male Bft15b)
ATGAATACGCTTGTCAGGAACTTTCTGGCCGCGGACCGGTTCGCCGTCGT
CGGCGCGTCCACCAATAGGAGCAAGTTCGGCAACAAGGTGCTGCGGTGCT
ACCTGTGGCGGGAGAAGACGGTCTTCCCTGTTAACCCACGCGAGGAGGAA
ATCGAGGGGAAGAAGTGCGTCAAGTCGCTCTCTGACCTTGCGGACCCGCA
AGACGTGTCCGTTTCCGTCGTCACTCCCCCGGCGGTGACTCTTGGCGTTG
TCGAGGAGGCCGGGCGCCTGGGCGTGAAGAGGCTGTGGCTCCAACCGGGG
AGCGAGAACGACGAGGTCTTGTCGAAGGCCGAGGAATTGGGCCTGCAAAT
CATCCACGGGGAGCCTTGCGTTTTGGTAGAGCTCGGCTACTACGCACCCG
GTGGCCTGGGCAGCAGCAGCAGCGACGGCGGTGAGGGCAGCGGCGGCGGC
GGCGGTAGCGGCAGCGGCAGCAGCCTGTAG
back to top