EsuBft764_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft764_2a-0001
Unique NameEsuBft764_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:246024..248216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft764_2
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length188
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_001490.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft764_2aEsuBft764_2aEctocarpus subulatus male Bft15bgeneScaffold_630 246024..248216 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_2a-0001-exonEsuBft764_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 246024..247043 -
EsuBft764_2a-0001-exonagat-exon-61789Ectocarpus subulatus male Bft15bexonScaffold_630 247355..248216 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_2a-0001-exonagat-three_prime_utr-21212Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 246024..246618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_2a-0001-cdsEsuBft764_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 246619..247043 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_2a-0001-exonagat-five_prime_utr-13657Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 248073..248216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft764_2a-0001EsuBft764_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 246619..248072 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft764_2a-0001 ID=EsuBft764_2a-0001|Name=EsuBft764_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1882bp|location=Sequence derived from alignment at Scaffold_630:246024..248216- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAGAGGAGACTCGTTTCGGGGCCACACGCAAGAACGGGGCGCAGGTCGAG
CCGGGGGGGAAACAGAGAGGTATACATACGAAGCGAAGCGAAGGGAATTT
GTCGAGTACTTCGTTTACCGAGGGAGAGGCAAGCGAAAGCAGGAATGCCG
CCGCGGCCCCTTCGTGGTGAACCCAAGGTGGGTACACCGACACAAAGGAG
GCGTTTGCCGACGCTGCTGTTGTGCCTCCTCGCCTCCGCTGGTGCTACCG
CTGCGGCGGCGTGGGTCTTCCACCTCCGACGGGCAACTCCCGATTGCGGC
ACACATGCCGACGTCTCGCACCAGGGCCTCACCTGCGGGATTACCCCAGG
CGGCAAGAGCATCGGGGTACTGCACGAACAACAGCAGGAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCGTATTGTTTTCTTCGATGCGCCGGACGGC
CCCTCGGCTCCGGGCGTCGGGCACAGCCAAGACCACCACGAGCAGCAGAA
GTTTCAGCAGCGGGAGCGGCGGCCTCCGTGCGCCGAGAGCGACGACCCGG
CCTACGCGTGCCTCGTGCCGCGCCCGCCCGGGTCTTTCGCGGACGAGATC
ATGCTGTATCTTTCCTTGTCGTGGTCGTCGTCGTCTGTGGGCGATGCAGC
ACAGCAGCAGCAGGAACAGCAGCAGGAACAGCAGTGGCTTTCCGTCAAGG
TCGTGGTTCCCGCGGCATCTCGGGGGGGTGGAAGCGGGGGCGGGGTAGGA
GCGAGATGGGCTTCGCTGGGGTTTTCTCCGGACGGCAAGATGGCGGGTCC
GAGCGAGGCCGTAGTCGGGTTCGTGGGGGCGACCGAGGCGGCCAGCAGCA
GCAGTAGCCAAGAACCACCGGCGGCGGCGGGGGTCCTCCGCTACCGCATG
GATGGTTACAGAATCGCCTCCGTGACGCCTCTGTCGGATCGACACCAGGT
TCTGACGGAACAGAGCGTCGAGACCACCGAGGAAGGGTCCCTCATTGTCC
GTTTCAAGCGCCCCCTGGTGGAAACATTTTCCGCGGGTCGGGACGCTTGC
GCGGCAACGGCGGCGGCCGTGGGGGAGGAAGGTACAGGGGGGCTGGAAGC
GGCTGTTGCAGGAGCGGTGGCGGAGGTCTGCTCGGGGGAAGCGGGGGGAT
CATCCATGGAGTGGTTGGATCCCCGAGAGCGGGGCGTGGTGCTGCTTTGG
GCCTACGGGACGGGGGCCTGGCCGAGCTACCACGACGCCACGGGGGCGTT
TGTTCTGCCGCGCTTGACAGCAGTCGAGGTCGATTGACCCTCGCCCGAGC
GGTTCCTTCTCTGTAGAAGCGTCTTGACTGCGGCCGAAGATGCTGTTCGT
GTTGGCGCTGTTACAGCAGTAGGGGGGGTGGTTTTCCAACCCCCCATCTT
GTGCCATTTTGTGCAGAGAGGCTTTTCTTTTGTGGGAGGATCTTCGGTTC
TTGTTTTTGATGTGTTGCTTGGTTCGCCGTCGATCAAAGGCGAACGAAAA
AGGAGCTTTTGGAACCACAATCAACGCTTCTCTCGGCTTTGTTGTTCGCA
ACGTTGGTGATTGGCATTTGAGTCATGTATACGTGCACTGTTGCGAGGCA
GTCCGGTACTACATGTTGTGAGGGCCAAGGCGGTATTATGTTGATTTACG
TAGACCCCACGATCCCCTCCCCTTTTTGGAGGGCATTCATGACGAAGCCA
TTCTTGTTCCTCAGGACAAATATAAAACGGAAGGAGAGGCTAGGGATAGG
GGCTGGCCCGATGTCTATGTGGGTCTGTGTGGTCTCTAATCATTCAAGTG
ACAGGACCCTGGGTGTCAAGAGGAATTGTCCACAGAGGATTGTACAAAGG
ACCCCAGCCTACAAGCACTGCTACCGACCTGA
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protein sequence of EsuBft764_2a-0001

>EsuBft764_2 ID=EsuBft764_2|Name=EsuBft764_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=380bp
MPPRPLRGEPKVGTPTQRRRLPTLLLCLLASAGATAAAAWVFHLRRATPD
CGTHADVSHQGLTCGITPGGKSIGVLHEQQQEQQQQQQQQQQRIVFFDAP
DGPSAPGVGHSQDHHEQQKFQQRERRPPCAESDDPAYACLVPRPPGSFAD
EIMLYLSLSWSSSSVGDAAQQQQEQQQEQQWLSVKVVVPAASRGGGSGGG
VGARWASLGFSPDGKMAGPSEAVVGFVGATEAASSSSSQEPPAAAGVLRY
RMDGYRIASVTPLSDRHQVLTEQSVETTEEGSLIVRFKRPLVETFSAGRD
ACAATAAAVGEEGTGGLEAAVAGAVAEVCSGEAGGSSMEWLDPRERGVVL
LWAYGTGAWPSYHDATGAFVLPRLTAVEVD
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mRNA from alignment at Scaffold_630:246024..248216-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft764_2a-0001 ID=EsuBft764_2a-0001|Name=EsuBft764_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2193bp|location=Sequence derived from alignment at Scaffold_630:246024..248216- (Ectocarpus subulatus male Bft15b)
AAGAGGAGACTCGTTTCGGGGCCACACGCAAGAACGGGGCGCAGGTCGAG
CCGGGGGGGAAACAGAGAGGTATACATACGAAGCGAAGCGAAGGGAATTT
GTCGAGTACTTCGTTTACCGAGGGAGAGGCAAGCGAAAGCAGGAATGCCG
CCGCGGCCCCTTCGTGGTGAACCCAAGGTGGGTACACCGACACAAAGGAG
GCGTTTGCCGACGCTGCTGTTGTGCCTCCTCGCCTCCGCTGGTGCTACCG
CTGCGGCGGCGTGGGTCTTCCACCTCCGACGGGCAACTCCCGATTGCGGC
ACACATGCCGACGTCTCGCACCAGGGCCTCACCTGCGGGATTACCCCAGG
CGGCAAGAGCATCGGGGTACTGCACGAACAACAGCAGGAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCGTATTGTTTTCTTCGATGCGCCGGACGGC
CCCTCGGCTCCGGGCGTCGGGCACAGCCAAGACCACCACGAGCAGCAGAA
GTTTCAGCAGCGGGAGCGGCGGCCTCCGTGCGCCGAGAGCGACGACCCGG
CCTACGCGTGCCTCGTGCCGCGCCCGCCCGGGTCTTTCGCGGACGAGATC
ATGCTGTATCTTTCCTTGTCGTGGTCGTCGTCGTCTGTGGGCGATGCAGC
ACAGCAGCAGCAGGAACAGCAGCAGGAACAGCAGTGGCTTTCCGTCAAGG
TCGTGGTTCCCGCGGCATCTCGGGGGGGTGGAAGCGGGGGCGGGGTAGGA
GCGAGATGGGCTTCGCTGGGGTTTTCTCCGGACGGCAAGATGGCGGGTCC
GAGCGAGGCCGTAGTCGGGTTCGTGGGGGCGACCGAGGCGGCCAGCAGCA
GCAGTAGCCAAGGTGAGGGATTTTTTTTTGTCTCGAGAATGGACGCTGTT
TTGTTTTTAGAAAATGTATGCATGCAATCACTGAAAGAAGTACCTGGTTG
AAACCAACCCCTCTATTTTTCGGAAAATATTTATGCCTGCCTTCCACCCG
ATGTTGATTTGGGCATAAATTCTTTTTGGGCCAATGAAATAAGCGCGCGT
TGAAAGGGAGTGACTTCGTTGCCTGACATTTGTTCAGGCTGATTCTAATA
CATCCGTTTTCCCCATGGATCGCCCTCTGTGACGCCAACCATTCCATCCC
GTCCGGGCATCTGGCTGCCGCAGAACCACCGGCGGCGGCGGGGGTCCTCC
GCTACCGCATGGATGGTTACAGAATCGCCTCCGTGACGCCTCTGTCGGAT
CGACACCAGGTTCTGACGGAACAGAGCGTCGAGACCACCGAGGAAGGGTC
CCTCATTGTCCGTTTCAAGCGCCCCCTGGTGGAAACATTTTCCGCGGGTC
GGGACGCTTGCGCGGCAACGGCGGCGGCCGTGGGGGAGGAAGGTACAGGG
GGGCTGGAAGCGGCTGTTGCAGGAGCGGTGGCGGAGGTCTGCTCGGGGGA
AGCGGGGGGATCATCCATGGAGTGGTTGGATCCCCGAGAGCGGGGCGTGG
TGCTGCTTTGGGCCTACGGGACGGGGGCCTGGCCGAGCTACCACGACGCC
ACGGGGGCGTTTGTTCTGCCGCGCTTGACAGCAGTCGAGGTCGATTGACC
CTCGCCCGAGCGGTTCCTTCTCTGTAGAAGCGTCTTGACTGCGGCCGAAG
ATGCTGTTCGTGTTGGCGCTGTTACAGCAGTAGGGGGGGTGGTTTTCCAA
CCCCCCATCTTGTGCCATTTTGTGCAGAGAGGCTTTTCTTTTGTGGGAGG
ATCTTCGGTTCTTGTTTTTGATGTGTTGCTTGGTTCGCCGTCGATCAAAG
GCGAACGAAAAAGGAGCTTTTGGAACCACAATCAACGCTTCTCTCGGCTT
TGTTGTTCGCAACGTTGGTGATTGGCATTTGAGTCATGTATACGTGCACT
GTTGCGAGGCAGTCCGGTACTACATGTTGTGAGGGCCAAGGCGGTATTAT
GTTGATTTACGTAGACCCCACGATCCCCTCCCCTTTTTGGAGGGCATTCA
TGACGAAGCCATTCTTGTTCCTCAGGACAAATATAAAACGGAAGGAGAGG
CTAGGGATAGGGGCTGGCCCGATGTCTATGTGGGTCTGTGTGGTCTCTAA
TCATTCAAGTGACAGGACCCTGGGTGTCAAGAGGAATTGTCCACAGAGGA
TTGTACAAAGGACCCCAGCCTACAAGCACTGCTACCGACCTGA
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Coding sequence (CDS) from alignment at Scaffold_630:246024..248216-

>EsuBft764_2a-0001 ID=EsuBft764_2a-0001|Name=EsuBft764_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1143bp|location=Sequence derived from alignment at Scaffold_630:246024..248216- (Ectocarpus subulatus male Bft15b)
ATGCCGCCGCGGCCCCTTCGTGGTGAACCCAAGGTGGGTACACCGACACA
AAGGAGGCGTTTGCCGACGCTGCTGTTGTGCCTCCTCGCCTCCGCTGGTG
CTACCGCTGCGGCGGCGTGGGTCTTCCACCTCCGACGGGCAACTCCCGAT
TGCGGCACACATGCCGACGTCTCGCACCAGGGCCTCACCTGCGGGATTAC
CCCAGGCGGCAAGAGCATCGGGGTACTGCACGAACAACAGCAGGAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCGTATTGTTTTCTTCGATGCGCCG
GACGGCCCCTCGGCTCCGGGCGTCGGGCACAGCCAAGACCACCACGAGCA
GCAGAAGTTTCAGCAGCGGGAGCGGCGGCCTCCGTGCGCCGAGAGCGACG
ACCCGGCCTACGCGTGCCTCGTGCCGCGCCCGCCCGGGTCTTTCGCGGAC
GAGATCATGCTGTATCTTTCCTTGTCGTGGTCGTCGTCGTCTGTGGGCGA
TGCAGCACAGCAGCAGCAGGAACAGCAGCAGGAACAGCAGTGGCTTTCCG
TCAAGGTCGTGGTTCCCGCGGCATCTCGGGGGGGTGGAAGCGGGGGCGGG
GTAGGAGCGAGATGGGCTTCGCTGGGGTTTTCTCCGGACGGCAAGATGGC
GGGTCCGAGCGAGGCCGTAGTCGGGTTCGTGGGGGCGACCGAGGCGGCCA
GCAGCAGCAGTAGCCAAGAACCACCGGCGGCGGCGGGGGTCCTCCGCTAC
CGCATGGATGGTTACAGAATCGCCTCCGTGACGCCTCTGTCGGATCGACA
CCAGGTTCTGACGGAACAGAGCGTCGAGACCACCGAGGAAGGGTCCCTCA
TTGTCCGTTTCAAGCGCCCCCTGGTGGAAACATTTTCCGCGGGTCGGGAC
GCTTGCGCGGCAACGGCGGCGGCCGTGGGGGAGGAAGGTACAGGGGGGCT
GGAAGCGGCTGTTGCAGGAGCGGTGGCGGAGGTCTGCTCGGGGGAAGCGG
GGGGATCATCCATGGAGTGGTTGGATCCCCGAGAGCGGGGCGTGGTGCTG
CTTTGGGCCTACGGGACGGGGGCCTGGCCGAGCTACCACGACGCCACGGG
GGCGTTTGTTCTGCCGCGCTTGACAGCAGTCGAGGTCGATTGA
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