EsuBft759_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft759_9a-0001
Unique NameEsuBft759_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_561contigScaffold_561:321138..322207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog3750.XP_008387315.1
ProteomeIdEsuBft759_9
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl35493|Streptophyta
Length1020
Hectar predicted targeting categoryother localisation
Evalue3.58e-32
EggNOG OGsCOG2801@1|root,KOG1075@1|root,KOG0017@2759|Eukaryota,KOG1075@2759|Eukaryota,37Q53@33090|Viridiplantae,3GHAQ@35493|Streptophyta,4JSM9@91835|fabids
Date last modified2016-06-14
Date creation2016-06-14
Descriptionribonuclease H protein At1g65750
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft759_9aEsuBft759_9aEctocarpus subulatus male Bft15bgeneScaffold_561 321138..322207 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft759_9a-0001-exonEsuBft759_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_561 321138..321583 -
EsuBft759_9a-0001-exonagat-exon-103682Ectocarpus subulatus male Bft15bexonScaffold_561 321634..322207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft759_9a-0001-cdsEsuBft759_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_561 321138..321583 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft759_9a-0001-exonagat-five_prime_utr-13595Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_561 321803..322207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft759_9a-0001EsuBft759_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_561 321138..321802 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft759_9a-0001 ID=EsuBft759_9a-0001|Name=EsuBft759_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1020bp|location=Sequence derived from alignment at Scaffold_561:321138..322207- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAGCCCCCCCTGTGTTTTTTCCAGCAGACGAGTTCACCGATGAGGAAGG
ACAGGGAGGGCCGGAGACAGGGGAGGCAGAATCGGCGGGTCCGGGAGGGC
AGGAGGTAGAGTCGGAGAGTCAGGAAGGGTTGGATGAAGAGTTGGTTGAG
CCGGGAGGGCAGGAGGTAGAATCGGAGTCATTTCCCCCTGCTACGCACGT
ACCATCTGATCGTCGTGTGCGGCATGAGCTTGCTAGTTAAGACACTGCTG
CGAATGAGAATGTTGGAGTCAGAGAAGGAAGAACTCGTGCGCAAACTCGG
GCAGTAAATCAGCAGAGCGTAACCGGCCTCATCGTCACTCTAGGAGCCAT
CTCCGCATCAGAAATAATAGAGGCACTCTTAGTGGAACAGAGAGCATCTG
ATGCAATGGAATTGCCGAAGGTGCTCATTCAGGACGTAGAGTCAGAACCG
GGTAGCTATAAAGAAGCCCGTCAGTCAAAATACTCCTCGATATGGGACAA
GACCACGTCTGCAGAGTTTGAAGGCTTGTTAAGAGCAGGAACGTTCGCGT
TAGCAGTAAAGGTTCCAATAGGCTGCAAGATAGTGAAGGCCAAGGCTAGG
CTTGTAGCGAAGGGCTTCAAGCAGAAGCATGGTGTGGATTATCTTGAGAC
TTTCTCGCCTACTGCAAATGCTGCATCGATTCGTTTGTTGGTAGCATTGG
CGTGCAAGTATGATTTGGAATATCTCCACTTTGACATTGAGCAAGCATTT
GTTCAGTCGGAATTGGATCACGAGGTGTTCATGAAGTTGCCTCCTGGCTG
CGAGTCGATGGCAGGAAAGGTAGTCCGTTTAGACAAAATTTTGTATGGAC
TGAGACAGGCATCTAGAACAATTCACTGGAGACTTGTGTCGGACCTGAAG
AGGATTGGTTTCAAACAGTCTCTGTCAGACCCCTGTGTTCTTCGTCTCAT
GATGGGAGACGAGGTGTTGGGAATGATTGCCATTCATGTGGATGACATCC
TGTATGCAGGAATGGAGTGA
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protein sequence of EsuBft759_9a-0001

>EsuBft759_9 ID=EsuBft759_9|Name=EsuBft759_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=204bp
MELPKVLIQDVESEPGSYKEARQSKYSSIWDKTTSAEFEGLLRAGTFALA
VKVPIGCKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALAC
KYDLEYLHFDIEQAFVQSELDHEVFMKLPPGCESMAGKVVRLDKILYGLR
QASRTIHWRLVSDLKRIGFKQSLSDPCVLRLMMGDEVLGMIAIHVDDILY
AGME
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mRNA from alignment at Scaffold_561:321138..322207-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft759_9a-0001 ID=EsuBft759_9a-0001|Name=EsuBft759_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1070bp|location=Sequence derived from alignment at Scaffold_561:321138..322207- (Ectocarpus subulatus male Bft15b)
GCAGCCCCCCCTGTGTTTTTTCCAGCAGACGAGTTCACCGATGAGGAAGG
ACAGGGAGGGCCGGAGACAGGGGAGGCAGAATCGGCGGGTCCGGGAGGGC
AGGAGGTAGAGTCGGAGAGTCAGGAAGGGTTGGATGAAGAGTTGGTTGAG
CCGGGAGGGCAGGAGGTAGAATCGGAGTCATTTCCCCCTGCTACGCACGT
ACCATCTGATCGTCGTGTGCGGCATGAGCTTGCTAGTTAAGACACTGCTG
CGAATGAGAATGTTGGAGTCAGAGAAGGAAGAACTCGTGCGCAAACTCGG
GCAGTAAATCAGCAGAGCGTAACCGGCCTCATCGTCACTCTAGGAGCCAT
CTCCGCATCAGAAATAATAGAGGCACTCTTAGTGGAACAGAGAGCATCTG
ATGCAATGGAATTGCCGAAGGTGCTCATTCAGGACGTAGAGTCAGAACCG
GGTAGCTATAAAGAAGCCCGTCAGTCAAAATACTCCTCGATATGGGACAA
GACCACGTCTGCAGAGTTTGAAGGCTTGTTAAGAGCAGGAACGTTCGCGT
TAGCAGTAAAGGTTCCAATAGGCTGTACGTGATAGATGCTAGATGGGTCT
ACAAATGGAAAGCAGATGAAACAGGCAAGATAGTGAAGGCCAAGGCTAGG
CTTGTAGCGAAGGGCTTCAAGCAGAAGCATGGTGTGGATTATCTTGAGAC
TTTCTCGCCTACTGCAAATGCTGCATCGATTCGTTTGTTGGTAGCATTGG
CGTGCAAGTATGATTTGGAATATCTCCACTTTGACATTGAGCAAGCATTT
GTTCAGTCGGAATTGGATCACGAGGTGTTCATGAAGTTGCCTCCTGGCTG
CGAGTCGATGGCAGGAAAGGTAGTCCGTTTAGACAAAATTTTGTATGGAC
TGAGACAGGCATCTAGAACAATTCACTGGAGACTTGTGTCGGACCTGAAG
AGGATTGGTTTCAAACAGTCTCTGTCAGACCCCTGTGTTCTTCGTCTCAT
GATGGGAGACGAGGTGTTGGGAATGATTGCCATTCATGTGGATGACATCC
TGTATGCAGGAATGGAGTGA
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Coding sequence (CDS) from alignment at Scaffold_561:321138..322207-

>EsuBft759_9a-0001 ID=EsuBft759_9a-0001|Name=EsuBft759_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=615bp|location=Sequence derived from alignment at Scaffold_561:321138..322207- (Ectocarpus subulatus male Bft15b)
ATGGAATTGCCGAAGGTGCTCATTCAGGACGTAGAGTCAGAACCGGGTAG
CTATAAAGAAGCCCGTCAGTCAAAATACTCCTCGATATGGGACAAGACCA
CGTCTGCAGAGTTTGAAGGCTTGTTAAGAGCAGGAACGTTCGCGTTAGCA
GTAAAGGTTCCAATAGGCTGCAAGATAGTGAAGGCCAAGGCTAGGCTTGT
AGCGAAGGGCTTCAAGCAGAAGCATGGTGTGGATTATCTTGAGACTTTCT
CGCCTACTGCAAATGCTGCATCGATTCGTTTGTTGGTAGCATTGGCGTGC
AAGTATGATTTGGAATATCTCCACTTTGACATTGAGCAAGCATTTGTTCA
GTCGGAATTGGATCACGAGGTGTTCATGAAGTTGCCTCCTGGCTGCGAGT
CGATGGCAGGAAAGGTAGTCCGTTTAGACAAAATTTTGTATGGACTGAGA
CAGGCATCTAGAACAATTCACTGGAGACTTGTGTCGGACCTGAAGAGGAT
TGGTTTCAAACAGTCTCTGTCAGACCCCTGTGTTCTTCGTCTCATGATGG
GAGACGAGGTGTTGGGAATGATTGCCATTCATGTGGATGACATCCTGTAT
GCAGGAATGGAGTGA
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