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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Symbol | ABC |
| Status | Manually annotated |
| Seed ortholog | 2880.D8LIU7 |
| ProteomeId | EsuBft759_4 |
| Protein domains | IPR003593 |
| Protein domains | PTHR12847 |
| Protein domains | IPR003439 |
| Protein domains | IPR027417 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | abc transporter i family member 19 os:arabidopsis thaliana gn:abci19 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 9 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1133 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.07e-136 |
| EggNOG OGs | COG4586@1|root,KOG2355@2759|Eukaryota |
| Ec32 ortholog description | ABC transporter family protein |
| Ec32 ortholog | Ec-20_001610.1 |
| Date last modified | 2016-09-04 |
| Date creation | 2016-06-14 |
| Preferred name | CAF16 |
| KEGG ko | ko:K12608 |
| KEGG Pathway | ko03018,map03018 |
| GOs | GO:0000166,GO:0000288,GO:0000289,GO:0000956,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006368,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0030014,GO:0030015,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1903506,GO:2000112,GO:2001141 |
| Description | ATP-binding cassette transporter superfamily |
| Description | ATPase activity |
| COG category | L |
| BRITE | ko00000,ko00001,ko03019 |
| Note | Avia K., annotator |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0019637 |
| GO | 0010468 |
| GO | 0016887 |
| GO | 0010025 |
| GO | 1901575 |
| GO | 0072330 |
| GO | 0005524 |
| GO | 0000038 |
| GO | 0003824 |
| GO | 0006364 |
| GO | 0008146 |
| GO | 0009791 |
| GO | 0042335 |
| GO | 0080090 |
| GO | 0044712 |
| GO | 0010114 |
| GO | 0080167 |
| EC | 3.6.1.3 |
| GO | 0006519 |
| GO | 0010218 |
| GO | 0009409 |
| GO | 0005215 |
| GO | 0003333 |
| GO | 0006732 |
| GO | 0006796 |
| GO | 0008610 |
| GO | 0046148 |
| GO | 0008033 |
| GO | 0043234 |
| GO | 0048608 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft759_4a-0001 ID=EsuBft759_4a-0001|Name=EsuBft759_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1133bp|location=Sequence derived from alignment at Scaffold_561:256265..261882- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCGATGGCAACCTGTCCTTCAAGCACTGACGAAAACGCGAGTAGACGG CAGGTACCGATGGCCTTTTTGCAGGGACGCTGCTTCAACCACGTACGGCG CGAGTGGATCCACACCAGACACCGCCGGTTCAGCGGTGGTGGTGACCAAG CTAGACTTTACGTATGACGGCATGGACAAGCCGGTGCTGAAGCAGTTCGA CCTTAACCTGCCTACAGGAAGCAGGTGTCTTCTGATCGGACAAAACGGCG CGGGCAAGAGCACGCTCCTGCGCTTGCTGGCGGGGAGGCATATCACCAAG CCCGACGACGCGGTGATTGTACTTGACAAGCACGCGTTCCGGGATACTAC CCTCAACAAGCACAGGTCCTTCTTGTCCATGGACTGGGGCATGCGCACCA TCTCCTTCGCGGGACATGGGGTTCCCCTCCAAGCGGACATTGCCGTAGGT GACATGATGAAGAAGGACCAGGAGCGGTACCCGGAGCGGAGAGAGGAGTT GCTCAACATGCTCGGCGTCGACCCGAACTGGAGAATGCACCAGGCAAGCA AGACACATGAGGCTTGCGTGATTTTACATGTTGACACGTTCATGTGCTGC CGTTCTGTGTGCGTTTCTGACGGACAGAGGAGGAGGGTCCAGCTCCTGCT CGGCCTGGTGAAGCCGTTCAAGCTCCTCTTGCTTGATGAGGTCACCACAA GCTTAGATGTCGTGGTTCGACAAGACCTGCTGCACTGGCTCCACAAGGAG AGCGTGGGGCGGGGTGCCACCATCATCTACGCCACCCACATCTTCGACGG GCTGGACGAGTGGCCGACCCACCTCACTTACCTCACCAGGGACGGAAGCA CGGGCTGGCAGGGACGGCTGGAAGACCTGGAGCTCAACCGACAAATGAAG GAGAGGGGCGAAACTTGCACCCTCCTGAAGGTTGCAGTTCACTGGCTGAG GGGGGAGCAGGAAGAATACAGAAGGGAAACCTTGGAGAGCAGGCGGCAGG TGGAAGAGTCCGGGGGGTCTGACGCCATCCGCAACCGAAACCCCAACCTC AAAGCATGGGGAGGGTACGCACCGGGACGGATGGCCCATCAGGGTATCTG AGCATTTTTGAGGCACCACCTCCCAGCCGCTGG back to topprotein sequence of EsuBft759_4a-0001 >EsuBft759_4 ID=EsuBft759_4|Name=EsuBft759_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=366bp
MRWQPVLQALTKTRVDGRYRWPFCRDAASTTYGASGSTPDTAGSAVVVTK LDFTYDGMDKPVLKQFDLNLPTGSRCLLIGQNGAGKSTLLRLLAGRHITK PDDAVIVLDKHAFRDTTLNKHRSFLSMDWGMRTISFAGHGVPLQADIAVG DMMKKDQERYPERREELLNMLGVDPNWRMHQASKTHEACVILHVDTFMCC RSVCVSDGQRRRVQLLLGLVKPFKLLLLDEVTTSLDVVVRQDLLHWLHKE SVGRGATIIYATHIFDGLDEWPTHLTYLTRDGSTGWQGRLEDLELNRQMK ERGETCTLLKVAVHWLRGEQEEYRRETLESRRQVEESGGSDAIRNRNPNL KAWGGYAPGRMAHQGI back to topmRNA from alignment at Scaffold_561:256265..261882- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft759_4a-0001 ID=EsuBft759_4a-0001|Name=EsuBft759_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5618bp|location=Sequence derived from alignment at Scaffold_561:256265..261882- (Ectocarpus subulatus male Bft15b) ATGCGATGGCAACCTGTCCTTCAAGCACTGACGAAAACGCGAGTAGACGG
CAGGTACCGATGGCCTTTTTGCAGGGACGCTGCTTCAACCACGTACGGTA
CATTGTCGTCTTACCCTTTCCCTTCACGCTCGTTTTTTAAGGCGCGAGTG
GATCCACACCAGACACCGCCGGTTCAGCGGTGGTGGTGACCAAGCTAGAC
TTTACGTATGACGGCATGGACAAGCCGGTGCTGAAGCAGTTCGACCTTAA
CCTGCCTACAGGAAGCAGGTATACATAGGACGGATTCTTTTGCTGGCGTT
GGTGATGATGATGCCGCTACAGACTAGGTGGTTGTCGCTGCGGAGAACAT
GCTACGTGGGTGTCGTTATCGTGATATGCCGCCCGTGGAAGCGTTTGTAG
CCACGGTTTGCCACTAACCGCTAAAAATAAAGCGCACGGTCAGATCAGGC
CTTCCATGAGTTCTCATCCATCCAATGTGCGGCAGTTATCCTGAGAGTAA
TTCTGCTCTTGTCATTTATTGGAAGTTTACATTTGGTTTTGCCGCGAGCG
TTTCTCTCTTATGCACGACTGGACAAAGGATACCCAAACACCCACCCTGG
AAGAGACTTCCGTGCGGTCTGACTGATGACGCGGTCAAATCGAACCGTTG
GATCCTGTTACAGGTGTCTTCTGATCGGACAAAACGGCGCGGGCAAGAGC
ACGCTCCTGCGCTTGCTGGCGGGGAGGCATATCACCAAGCCCGACGACGC
GGTGATTGTACTTGACAAGTGAGCAAACCAAGATTGCTACAAAATGTTTT
CACATCAAAACTTAATTTTGGCATGTGTTAGTACATCATTATCTGTTGGC
AGAGGTCGTCGATAAACAAACCTCCCATCCCAGCGATCGAAATGGAAAAC
AAATGCTATACGTATTGGTTTCCACAGTAAAGCTTCATTCTAGCATGTGT
TAGCTTTGCGATGGCTTGTGTGCAAAAGGTATCAGGGAACGAACCTATCA
TTCCAGCGATCGTCATCGGACCGGGCCAACCCCTTTTCTCCAGTCTATAT
GTAGACCACGCGTGTTTCCGTTGCGTTTGTTGTGTGAAGAATCGGTCGGA
GAAAGTCTTCGCCCTCGGCGGATTCAACGTGCTCTATTTCAGGCGGATAC
TCCGTGAATGTATGAAGCCCACGCTGCACATTGTCCTGGCGTGAGTCTCC
GATTGGACGCCGTTCACGGCTGCCCTTTCACGTTTCCTCATTGGTGGGAG
GAGCTTATGCTAGCCCTGAGTGGTAGGCACTTCATGACTGGTGTGCTCCA
CTCTTGTGGTCGGTGAGACATATCCCCGCTGGGTATCTTTATCCGACCGT
GGTCACGATTTTCCCGCTTGGGTTGCGATCTGCTCCACAGGCACGCGTTC
CGGGATACTACCCTCAACAAGCACAGGTCCTTCTTGTCCATGGACTGGGG
CATGCGCACCATCTCCTTCGCGGGTGAGAGAACGGTTATGTTGGGTGGCG
ACAGTGGAGGACGTACAGCACGTTTCTGCGTATTTTGTCGCTCATGTGCG
TACCGTGTGTTGTAGAATAGGCCTTGTGAGTAGTCCGCCAGAATAAGGTT
TGATTTCTTGTTCACGTGTGAAAAGTGGTCGTTACTTCCCAGAATCTGGA
ATTGTTTTATCAGAGAGGGACTCCTGTAGCACGTTGCTGTTGCGTTTCCC
ACGGGTCTGCGTGCGACACAACCAACTAAACGATTATGTTCTTGACCCTT
TGGTATTGATTGATGACTGAGAGCAAAACCGGCCCTAAGTCGGAACCGGA
CATTCGATACTCACGCACGAGTCGTTGCACCACGGATATTGTTTTTTATT
GTAGAATATTCCTCCCATGACAAGGTCTTGGTTTCATACTGATTGGTTGA
TGAACAAGACAGGTTAGGTCAGGCCAAACATGGCAGTAACATGCGGGGGA
CAGTTTGAGGTGGGAACGGAATCAATGCTAACCTGCCGATCAACTAGCGA
ATTGTGCTACAACGCTCAACCGGCGCGTAAATCATGTTTGTTGACTTCGA
TCACTGCCACACCACTACTGACCAACAACAAGATTCCCACTCAGTGAAAT
TCATATCATGTTGATCTTGTGGAATGTCTTTTTTTTCGGCAGGACATGGG
GTTCCCCTCCAAGCGGACATTGCCGTAGGTGACATGATGAAGAAGGACCA
GGAGCGGTACCCGGAGCGGAGAGAGGAGTTGCTCAACATGCTCGGCGTCG
ACCCGAACTGGAGAATGCACCAGGCAAGCAAGACACATGAGGCTTGCGTG
ATTTTACATGTTGACACGTTCATGTGCTGCCGTTCTGTGTGCGTACGTTG
ATGCGTTACTAAGTTCTCAAATTGTTGGTGTGTTTCTCTCTGTTCGTTTT
TTTGTGCTTTCGTCACTGCTGCGCTGGTTCTTTGTTTCTTCCTTCTCACA
CCAGCTCCTGGAAGAAGCCTAGCCCAGGGCCATCTGCGCGAAGGGTCTTA
CAGCTGTCGATACGTCATTTGAGTCAAATATTTACCGTCGACCTTGCCAG
CATGTTGACAAGCCGAGACCCGGTGACCCATGGGTACGTTGACGGAAAAG
CTCGTACTGTCTAGTGCGTTACCTCTCCACCATGATGTTTCCTTTTGAAG
AACATTGCGATTGTTTCCCCGCCACCACGTCGTTTCTTTTGGAATAGCAG
GTTTCTGACGGACAGAGGAGGAGGGTCCAGCTCCTGCTCGGCCTGGTGAA
GCCGTTCAAGCTCCTCTTGCTTGATGAGGTCACCACAAGCTTAGGTACGC
GCAAGGAAGCGGTCGGTCTTGATTGCCCCCGTTTTAAACGGAAATTCCCC
CTGAAGCTGACGGGAAATTTATAGTTGTCGTCGCGAAGGTTGAGAATAGT
TGGTCAAGTTCGCAGCAACAAACGACGCTAATATCCGTAGTTATCTCACG
TGTGGCTTCATCTCTCCGCCCCCGCATCTCTTTCGTTTGACCCCAAAGCT
GTTCCAACCATGTCTATCGATGCGCTGAGCCTGTCATATCTCCCTTGCTT
GATTTTTTGTTTCTATTTTTTCCGGATACAATCGAAAAGCTTTAGTCTTG
GCACTGTTTCTTGTATCCGGGTCCGAACTTCACGTCCATGTTTTCCTTGC
TGGACGAGACGTTTTATGTACGTGTCGATTGGCCCTCAGTGTGGCTTGCT
TTCGTTTGCCGTGTGTTGTTCCATGGTTTGGTGGTTGGTTTTTCGTTTTT
CGCTGTGCGAGCGAGACAGGTAATCGACTGCTGCTGTTATGTAGCGAGAA
CTCTCCTCTTCGTATTTCTGTTCTGTGCTTTTTTCAGCGCGTTCGTTCTG
GAGACCAGAAACAAGAAGCCATAAAAATCTTACCATAGTAACACTCGTCA
ACTGTTTCTCTCATATGTTTGTGGTGCCAAGGAACGCGGTGAAGGCTAGC
CTCGCCTCCCCGTCAAGTCGCTACCTTCCCCCGAGTACTACCTTCTGCAA
GACCGACTTGGTATGTGTCGTATTTTTCCTTGTGTGCATTGGTTTGCGCG
TGCTCACGGCCTGCTGCACGCTTGGTATTTCTGTCTGCGCGGGCGGGGGC
TCTCAACAGATGTCGTGGTTCGACAAGACCTGCTGCACTGGCTCCACAAG
GAGAGCGTGGGGCGGGGTGCCACCATCATCTACGCCACCCACATCTTCGA
CGGGCTGGACGAGTGGCCGACCCACCTCACTTACCTCACCAGGGACGGAA
GCACGGGCTGGCAGGGACGGCTGGAAGACCTGGAGCTCAACCGACAAATG
AAGGAGGTACGCGCGTGCACCCTTGCTTGCGGCCTGCTACGTAGTCGTGG
TCGGTTGATGGCGCTGGCACTGTCGAGTACTTCCCGCACGAGGTGCACGC
GGCTTTCTCAAATGCTTTCCCAGGCCCTTGCGCTTGCTTGAAACGGTATC
CTGTTTGCCCTCTTCCCGTGGGCACTTTCCTCTCCCCCCTCCGTCCAATG
GGTTTTCGTCGCTTGGTAACGTTGTAAAACAAGCCAATTCACTTCGTGAA
CTCGGCAACCAGGTTACCGTTTTTTTTTTCTTCCTCCTTTTTTTTTTGGC
GGTAACCATAATGGTGGTCGAGTAGATCATGTTGTGCGGGGTCAAGAACC
CTCACTCCGCGCAAGGGGGATGATCGCACCACGTTGTGTTGAAATGGTCA
CGCACCCTCGAGGCAGTTACACAGTGCTTACAACTGTCTCAAGAAGTGAA
AGCACCAGAAAATAAATTAAGTCATACGCAGCTGTCATCCGTACGCAAGG
AAGGAAGCACAAGATGCCGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCCCCCCTCCGACATTCCATGGAAGAGCCTTTT
ACACGAAGAGCCCCGGGTCTTGGGTTGGGGAAAATTTTTCTTGCCCGAGG
TAACATAATTTACTGAAGGTTGGGTTCACATCACGCCCTGGAGTCCACCG
CTTTCTGTCGTCCTCTCTCTCTTGAACTAACTCCGCCATGTAGTGTACCG
GTCACCCCTGTGCACCTCGCACTCTCCAAGCAGTTGGCTTTCGCCAACGG
TGGGCCGCGAGACGTGCGTGCGCCCGCTGTCACACACCTCATCTGACGCC
ACGCATGCCCGTTCCGACTGCTGCTGCTGCTTTTCTGCCATGTACAATCG
TCGTTGCAAAACCTGTCGGGGCCGGGAACCAATAACAGAGGGGCGAAACT
TGCACCCTCCTGAAGGTTGCAGTTCACTGGCTGAGGGGGGAGCAGGAAGA
ATACAGAAGGGAAACCTTGGAGAGCAGGCGGCAGGTGGAAGAGTCCGGGG
GGTCTGACGCCATCCGCAACCGAAACCCCAACCTCAAAGCATGTATGTGC
CGTGAATTCTTCTGGTTACATTGTCAACGTTATCCCATATGCCCAATGAC
ATCTCCGCTACTTGTACACAGAGTCAGTTGCCGTGGATCGGCTGTCGTTG
AATTTTTTGTTGGTCAGACGGCTTCCTACAGATTTCCCTTCCACAGTTCT
CCAACTACTATAATACCAGCAGTATTGATGTCCTCCGGAGTATTTCGATT
TATTTCAAGCTCGAGTTCTCAAGTGCTAATTGCTGAAGTGCGAGCGCGTT
CTATACCTCATGTCTTGTTTGTTCGATCTCCAGACGTCGCAGGGGGAGGG
TACGCACCGGGACGGATGGCCCATCAGGGTATCTGAGCATTTTTGAGGCA
CCACCTCCCAGCCGCTGG back to topCoding sequence (CDS) from alignment at Scaffold_561:256265..261882- >EsuBft759_4a-0001 ID=EsuBft759_4a-0001|Name=EsuBft759_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1101bp|location=Sequence derived from alignment at Scaffold_561:256265..261882- (Ectocarpus subulatus male Bft15b) ATGCGATGGCAACCTGTCCTTCAAGCACTGACGAAAACGCGAGTAGACGG CAGGTACCGATGGCCTTTTTGCAGGGACGCTGCTTCAACCACGTACGGCG CGAGTGGATCCACACCAGACACCGCCGGTTCAGCGGTGGTGGTGACCAAG CTAGACTTTACGTATGACGGCATGGACAAGCCGGTGCTGAAGCAGTTCGA CCTTAACCTGCCTACAGGAAGCAGGTGTCTTCTGATCGGACAAAACGGCG CGGGCAAGAGCACGCTCCTGCGCTTGCTGGCGGGGAGGCATATCACCAAG CCCGACGACGCGGTGATTGTACTTGACAAGCACGCGTTCCGGGATACTAC CCTCAACAAGCACAGGTCCTTCTTGTCCATGGACTGGGGCATGCGCACCA TCTCCTTCGCGGGACATGGGGTTCCCCTCCAAGCGGACATTGCCGTAGGT GACATGATGAAGAAGGACCAGGAGCGGTACCCGGAGCGGAGAGAGGAGTT GCTCAACATGCTCGGCGTCGACCCGAACTGGAGAATGCACCAGGCAAGCA AGACACATGAGGCTTGCGTGATTTTACATGTTGACACGTTCATGTGCTGC CGTTCTGTGTGCGTTTCTGACGGACAGAGGAGGAGGGTCCAGCTCCTGCT CGGCCTGGTGAAGCCGTTCAAGCTCCTCTTGCTTGATGAGGTCACCACAA GCTTAGATGTCGTGGTTCGACAAGACCTGCTGCACTGGCTCCACAAGGAG AGCGTGGGGCGGGGTGCCACCATCATCTACGCCACCCACATCTTCGACGG GCTGGACGAGTGGCCGACCCACCTCACTTACCTCACCAGGGACGGAAGCA CGGGCTGGCAGGGACGGCTGGAAGACCTGGAGCTCAACCGACAAATGAAG GAGAGGGGCGAAACTTGCACCCTCCTGAAGGTTGCAGTTCACTGGCTGAG GGGGGAGCAGGAAGAATACAGAAGGGAAACCTTGGAGAGCAGGCGGCAGG TGGAAGAGTCCGGGGGGTCTGACGCCATCCGCAACCGAAACCCCAACCTC AAAGCATGGGGAGGGTACGCACCGGGACGGATGGCCCATCAGGGTATCTG A back to top
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