EsuBft748_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft748_9a-0001
Unique Name	EsuBft748_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_230	contig	Scaffold_230:456976..458152 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft748_9
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	117
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft748_9a	EsuBft748_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_230 456976..458152 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft748_9a-0001-exon	EsuBft748_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 456976..458152 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft748_9a-0001-exon	agat-three_prime_utr-21004	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_230 456976..457249 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft748_9a-0001-cds	EsuBft748_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_230 457250..458152 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft748_9a-0001	EsuBft748_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_230 457250..458152 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_230:456976..458152-
coding sequence from alignment at Scaffold_230:456976..458152-

spliced messenger RNA

>EsuBft748_9a-0001 ID=EsuBft748_9a-0001|Name=EsuBft748_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1177bp|location=Sequence derived from alignment at Scaffold_230:456976..458152- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTTCTCCATCGCCTTCATCTCGCCGCCCCCCAGCTCGCCGGCCCC
TACCATCCCAGGCCAAATAATCGGTTTGCCGTTCAATACACGCCGAAATG
CATGCCCCGAAGAAGGCGATGTCGACGACGACGCGCGGGCGGTGGCTGGA
GCGATCTATGTACCTTCTGCGGCGGAATGCTGCTGCGACGACGAAGTGGC
GGCGGCGGCACTCCTCGCCGCGGAAGTCCTCGGGCCCGGCAGCTTGGCGG
CACCTGGCGAAGGCGAAAGCGGTCCATCGGCCTCGAAGGTCGGCGGCGAC
GGCAACGGCTCGGCAGCGGTAACGGCGGCGGGTAGCAGAGCGGCGGTAGT
CCTCGTCGCGGTCATCCTCGGGTCCGGCAGCGCGGCGGCACCCGGCGAGG
GTGCAAACGGCGCGCCGTCCCCGGGGTTTGGCGGCAGCGGCGACGGTGCG
GCGGCGGTGGCGGCTGCAGTCCATGGTGCACCACCAGCGGTGTTCGACGG
CAACGATGAAATGGCGTCGGCGGTCGCGGGTCCCCACGGTGCAGCCGCAG
CAGCGGTCGGCGAACCGGTGACAGTACCCCCCGCGGCGGCGGCGGCGACG
GCAGGCCAAGGCGCAGCGGTGGCAGCAGGCGGCGAAGCGGCGATGGTCGC
GGGTTCCGACTCCCTGGGGCGGGTGTTCCCTTGTTGCTTGGCAGTCAAAC
TCACAATAGGTTCGGGAAAGTGGCCAGCGCGGTGGTGGAAAACGTCAACA
TCCATTTGTTCGGCACGACCCAACACAGCCACATCACACTTAGACGCAAC
ACCTTCCCTCGCACCAAATATCGCCGTACTCGTCCCCGAGTCTCCCTGCA
ACTGCTCACCACCTTTGGGTGTTGACATCCTAGTGTGGCATACCGGGGCT
TGAAAAGTCACAGCAGGCTTCACTACAGGAACCACAGGAACATCAGGCAC
AGACATACCAGCGACGGGAACACCAGACACCACCCCATCACTAACAACTC
CAATCTCATTTCCAGACACAGAATCATCCTCGCCTAGAGAATTCACACTA
CGTGTGAGGAAGAGACGAAGAGGGGCGCCACTTGCTGGAGGAATGTCGCC
CGGAGGTGGAGAGGGGGTCGCCGTCGAGGAGGCAGAGGTCGTTGGAGTAG
CGCCGGTGTACTGCTGCTGCTGCTGCT

protein sequence of EsuBft748_9a-0001

>EsuBft748_9 ID=EsuBft748_9|Name=EsuBft748_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=300bp
MLFSIAFISPPPSSPAPTIPGQIIGLPFNTRRNACPEEGDVDDDARAVAG
AIYVPSAAECCCDDEVAAAALLAAEVLGPGSLAAPGEGESGPSASKVGGD
GNGSAAVTAAGSRAAVVLVAVILGSGSAAAPGEGANGAPSPGFGGSGDGA
AAVAAAVHGAPPAVFDGNDEMASAVAGPHGAAAAAVGEPVTVPPAAAAAT
AGQGAAVAAGGEAAMVAGSDSLGRVFPCCLAVKLTIGSGKWPARWWKTST
SICSARPNTATSHLDATPSLAPNIAVLVPESPCNCSPPLGVDILVWHTGA

mRNA from alignment at Scaffold_230:456976..458152-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft748_9a-0001 ID=EsuBft748_9a-0001|Name=EsuBft748_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1177bp|location=Sequence derived from alignment at Scaffold_230:456976..458152- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCTCCATCGCCTTCATCTCGCCGCCCCCCAGCTCGCCGGCCCC
TACCATCCCAGGCCAAATAATCGGTTTGCCGTTCAATACACGCCGAAATG
CATGCCCCGAAGAAGGCGATGTCGACGACGACGCGCGGGCGGTGGCTGGA
GCGATCTATGTACCTTCTGCGGCGGAATGCTGCTGCGACGACGAAGTGGC
GGCGGCGGCACTCCTCGCCGCGGAAGTCCTCGGGCCCGGCAGCTTGGCGG
CACCTGGCGAAGGCGAAAGCGGTCCATCGGCCTCGAAGGTCGGCGGCGAC
GGCAACGGCTCGGCAGCGGTAACGGCGGCGGGTAGCAGAGCGGCGGTAGT
CCTCGTCGCGGTCATCCTCGGGTCCGGCAGCGCGGCGGCACCCGGCGAGG
GTGCAAACGGCGCGCCGTCCCCGGGGTTTGGCGGCAGCGGCGACGGTGCG
GCGGCGGTGGCGGCTGCAGTCCATGGTGCACCACCAGCGGTGTTCGACGG
CAACGATGAAATGGCGTCGGCGGTCGCGGGTCCCCACGGTGCAGCCGCAG
CAGCGGTCGGCGAACCGGTGACAGTACCCCCCGCGGCGGCGGCGGCGACG
GCAGGCCAAGGCGCAGCGGTGGCAGCAGGCGGCGAAGCGGCGATGGTCGC
GGGTTCCGACTCCCTGGGGCGGGTGTTCCCTTGTTGCTTGGCAGTCAAAC
TCACAATAGGTTCGGGAAAGTGGCCAGCGCGGTGGTGGAAAACGTCAACA
TCCATTTGTTCGGCACGACCCAACACAGCCACATCACACTTAGACGCAAC
ACCTTCCCTCGCACCAAATATCGCCGTACTCGTCCCCGAGTCTCCCTGCA
ACTGCTCACCACCTTTGGGTGTTGACATCCTAGTGTGGCATACCGGGGCT
TGAAAAGTCACAGCAGGCTTCACTACAGGAACCACAGGAACATCAGGCAC
AGACATACCAGCGACGGGAACACCAGACACCACCCCATCACTAACAACTC
CAATCTCATTTCCAGACACAGAATCATCCTCGCCTAGAGAATTCACACTA
CGTGTGAGGAAGAGACGAAGAGGGGCGCCACTTGCTGGAGGAATGTCGCC
CGGAGGTGGAGAGGGGGTCGCCGTCGAGGAGGCAGAGGTCGTTGGAGTAG
CGCCGGTGTACTGCTGCTGCTGCTGCT

Coding sequence (CDS) from alignment at Scaffold_230:456976..458152-

>EsuBft748_9a-0001 ID=EsuBft748_9a-0001|Name=EsuBft748_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=903bp|location=Sequence derived from alignment at Scaffold_230:456976..458152- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCTCCATCGCCTTCATCTCGCCGCCCCCCAGCTCGCCGGCCCC
TACCATCCCAGGCCAAATAATCGGTTTGCCGTTCAATACACGCCGAAATG
CATGCCCCGAAGAAGGCGATGTCGACGACGACGCGCGGGCGGTGGCTGGA
GCGATCTATGTACCTTCTGCGGCGGAATGCTGCTGCGACGACGAAGTGGC
GGCGGCGGCACTCCTCGCCGCGGAAGTCCTCGGGCCCGGCAGCTTGGCGG
CACCTGGCGAAGGCGAAAGCGGTCCATCGGCCTCGAAGGTCGGCGGCGAC
GGCAACGGCTCGGCAGCGGTAACGGCGGCGGGTAGCAGAGCGGCGGTAGT
CCTCGTCGCGGTCATCCTCGGGTCCGGCAGCGCGGCGGCACCCGGCGAGG
GTGCAAACGGCGCGCCGTCCCCGGGGTTTGGCGGCAGCGGCGACGGTGCG
GCGGCGGTGGCGGCTGCAGTCCATGGTGCACCACCAGCGGTGTTCGACGG
CAACGATGAAATGGCGTCGGCGGTCGCGGGTCCCCACGGTGCAGCCGCAG
CAGCGGTCGGCGAACCGGTGACAGTACCCCCCGCGGCGGCGGCGGCGACG
GCAGGCCAAGGCGCAGCGGTGGCAGCAGGCGGCGAAGCGGCGATGGTCGC
GGGTTCCGACTCCCTGGGGCGGGTGTTCCCTTGTTGCTTGGCAGTCAAAC
TCACAATAGGTTCGGGAAAGTGGCCAGCGCGGTGGTGGAAAACGTCAACA
TCCATTTGTTCGGCACGACCCAACACAGCCACATCACACTTAGACGCAAC
ACCTTCCCTCGCACCAAATATCGCCGTACTCGTCCCCGAGTCTCCCTGCA
ACTGCTCACCACCTTTGGGTGTTGACATCCTAGTGTGGCATACCGGGGCT
TGA