EsuBft748_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft748_8a-0001
Unique NameEsuBft748_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:453497..454635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft748_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length75
Hectar predicted targeting categoryother localisation
Evalue1.95e-49
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft748_8aEsuBft748_8aEctocarpus subulatus male Bft15bgeneScaffold_230 453497..454635 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_8a-0001-exonEsuBft748_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 453497..453762 +
EsuBft748_8a-0001-exonagat-exon-61368Ectocarpus subulatus male Bft15bexonScaffold_230 453995..454049 +
EsuBft748_8a-0001-exonagat-exon-61369Ectocarpus subulatus male Bft15bexonScaffold_230 454198..454635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_8a-0001-cdsEsuBft748_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 453497..453762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_8a-0001EsuBft748_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 453497..454635 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft748_8a-0001 ID=EsuBft748_8a-0001|Name=EsuBft748_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=759bp|location=Sequence derived from alignment at Scaffold_230:453497..454635+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGGAGGAGCCAGTTTCCGCGAGAAATGCCTCTTCTCATGGACAA
CTTGCACGTACGTGCAGAAATATCTGACGGAGCACTGCAAAACGCTCGCC
TACTGCTTTTTTCCGGCCAACACCACGGACGCATGCTGAAGGTTGAGGTT
GGGAGGCAGCTGGATGATTGGCTCAAGCAGGCGGACAACATCGAAAAGTG
GGAAAGCAACGGGTTGATGGCGTCTGACCGGCGCGTACTGATCACGCAAT
GGGTTGGGGCAGCCGCGGAGGACATGAATAACGGCGGATCCAGCGACGAA
GACGACGAAGGCAAGTTGGATTTTCTGACAATGATGATGTTGCTGGGATT
TCGAACGCCGCTCTCTGCAGACACGGCCCGCGGCCAGAACGACGAGCTGA
GTCTCCTGGACGAAGACGACACTATGGGCCCGGCCGATGAGATTCTCGGC
ATGGAGGTTCCGGACGGTTTTAGCCTTCAAGAGGCTACGGCCGCTGCTCT
TGACAATTCCCTACTGCAGCGTCTAGTACTCGTTTCGCTGAGCATAGACT
GGTTTGCCGGGCTGATCACTCGGCAATCTCAACAACGTACCCGCCAACCC
GACTACTACCGTGTGCTTTTCGATCTGGACGAAAGTACACGCAGCACGAA
GTTGCCGTTGAAGAGGTACAGTGGAGATCCGGATGCGGTTGTAGGGTCGT
GGGTTTTGCTGGAGGGGAACACCGTAGACGAGGGGGCAGATCCTACCATG
GCAGAGTAG
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protein sequence of EsuBft748_8a-0001

>EsuBft748_8 ID=EsuBft748_8|Name=EsuBft748_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=252bp
MRGRSQFPREMPLLMDNLHVRAEISDGALQNARLLLFSGQHHGRMLKVEV
GRQLDDWLKQADNIEKWESNGLMASDRRVLITQWVGAAAEDMNNGGSSDE
DDEGKLDFLTMMMLLGFRTPLSADTARGQNDELSLLDEDDTMGPADEILG
MEVPDGFSLQEATAAALDNSLLQRLVLVSLSIDWFAGLITRQSQQRTRQP
DYYRVLFDLDESTRSTKLPLKRYSGDPDAVVGSWVLLEGNTVDEGADPTM
AE
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mRNA from alignment at Scaffold_230:453497..454635+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft748_8a-0001 ID=EsuBft748_8a-0001|Name=EsuBft748_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1139bp|location=Sequence derived from alignment at Scaffold_230:453497..454635+ (Ectocarpus subulatus male Bft15b)
ATGCGCGGGAGGAGCCAGTTTCCGCGAGAAATGCCTCTTCTCATGGACAA
CTTGCACGTACGTGCAGAAATATCTGACGGAGCACTGCAAAACGCTCGCC
TACTGCTTTTTTCCGGCCAACACCACGGACGCATGCTGAAGGTTGAGGTT
GGGAGGCAGCTGGATGATTGGCTCAAGCAGGCGGACAACATCGAAAAGTG
GGAAAGCAACGGGTTGATGGCGTCTGACCGGCGCGTACTGATCACGCAAT
GGGTTGGGGCAGCCGCGTAAATTCTCGACAACCGCGAGGAGTACCGTTTC
GCCTTTTCGAGAAGTGTGGCATGGCGATGACTGTGAACGGTTCAGGTGAT
GTACCGAATCAACTTGGAGGGTTTGGACAAATTGTATCCCGTCATGGACG
CCTAGGGCTCCAGCTATGACGAGGGACCTCTAGAGCCTGGGGAGGGTGCG
CGGGGGGGGGGTTGACCAGAGGGTTGAAGGCGACAGAGACACAAGCAGGG
AGGACATGAATAACGGCGGATCCAGCGACGAAGACGACGAAGGCAAGTTG
GATGTTCACCAGACTCCTTTGTATTTGTATTTGTTGTCGTTGCTGTTGCT
GTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGTTGT
TGCTGTTGTTGTTGTTGTTGCTCCTGCTGTTCTTCCACGAATAAAAATCA
GTTTCTGACAATGATGATGTTGCTGGGATTTCGAACGCCGCTCTCTGCAG
ACACGGCCCGCGGCCAGAACGACGAGCTGAGTCTCCTGGACGAAGACGAC
ACTATGGGCCCGGCCGATGAGATTCTCGGCATGGAGGTTCCGGACGGTTT
TAGCCTTCAAGAGGCTACGGCCGCTGCTCTTGACAATTCCCTACTGCAGC
GTCTAGTACTCGTTTCGCTGAGCATAGACTGGTTTGCCGGGCTGATCACT
CGGCAATCTCAACAACGTACCCGCCAACCCGACTACTACCGTGTGCTTTT
CGATCTGGACGAAAGTACACGCAGCACGAAGTTGCCGTTGAAGAGGTACA
GTGGAGATCCGGATGCGGTTGTAGGGTCGTGGGTTTTGCTGGAGGGGAAC
ACCGTAGACGAGGGGGCAGATCCTACCATGGCAGAGTAG
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Coding sequence (CDS) from alignment at Scaffold_230:453497..454635+

>EsuBft748_8a-0001 ID=EsuBft748_8a-0001|Name=EsuBft748_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=759bp|location=Sequence derived from alignment at Scaffold_230:453497..454635+ (Ectocarpus subulatus male Bft15b)
ATGCGCGGGAGGAGCCAGTTTCCGCGAGAAATGCCTCTTCTCATGGACAA
CTTGCACGTACGTGCAGAAATATCTGACGGAGCACTGCAAAACGCTCGCC
TACTGCTTTTTTCCGGCCAACACCACGGACGCATGCTGAAGGTTGAGGTT
GGGAGGCAGCTGGATGATTGGCTCAAGCAGGCGGACAACATCGAAAAGTG
GGAAAGCAACGGGTTGATGGCGTCTGACCGGCGCGTACTGATCACGCAAT
GGGTTGGGGCAGCCGCGGAGGACATGAATAACGGCGGATCCAGCGACGAA
GACGACGAAGGCAAGTTGGATTTTCTGACAATGATGATGTTGCTGGGATT
TCGAACGCCGCTCTCTGCAGACACGGCCCGCGGCCAGAACGACGAGCTGA
GTCTCCTGGACGAAGACGACACTATGGGCCCGGCCGATGAGATTCTCGGC
ATGGAGGTTCCGGACGGTTTTAGCCTTCAAGAGGCTACGGCCGCTGCTCT
TGACAATTCCCTACTGCAGCGTCTAGTACTCGTTTCGCTGAGCATAGACT
GGTTTGCCGGGCTGATCACTCGGCAATCTCAACAACGTACCCGCCAACCC
GACTACTACCGTGTGCTTTTCGATCTGGACGAAAGTACACGCAGCACGAA
GTTGCCGTTGAAGAGGTACAGTGGAGATCCGGATGCGGTTGTAGGGTCGT
GGGTTTTGCTGGAGGGGAACACCGTAGACGAGGGGGCAGATCCTACCATG
GCAGAGTAG
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