EsuBft748_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft748_7a-0001
Unique NameEsuBft748_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:441664..443730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G4Z5
ProteomeIdEsuBft748_7
Protein domainsIPR001372
Protein domainsSSF54648
Ownerapollo_admin@sb-roscoff.fr
Notedynein light chain cytoplasmic os:caenorhabditis elegans gn:dlc-1 pe:1 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length904
Hectar predicted targeting categoryother localisation
Evalue5.69e-48
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-19_003050.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
COG categoryS
BRITEko00000,ko00001,ko04812
Cross References
External references for this mRNA
DatabaseAccession
GO0051017
GO0043086
GO0034454
GO0006809
GO1900740
GO0045505
GO0007018
GO0008022
GO0040011
GO0009792
GO0044458
GO0007291
GO0007290
GO0016459
GO0072686
GO0070062
GO0006898
GO0008039
GO0003777
GO0021762
GO0019886
GO0042623
GO0008092
GO0051959
GO0048477
GO0000132
GO0030235
GO0008407
GO0005868
GO0004857
GO0002119
GO0007476
GO0000776
GO0005829
GO0042133
GO0035046
GO0006260
GO0040035
GO0019899
GO0008180
GO0019904
GO0006914
GO0097193
GO0005930
GO0055085
GO0042803
GO0035071
GO0005814
GO0040020
GO0043652
GO0042326
GO0010171
GO0042127
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft748_7aEsuBft748_7aEctocarpus subulatus male Bft15bgeneScaffold_230 441664..443730 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_7a-0001-exonEsuBft748_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 441664..442469 -
EsuBft748_7a-0001-exonagat-exon-61367Ectocarpus subulatus male Bft15bexonScaffold_230 443633..443730 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_7a-0001-exonagat-three_prime_utr-21003Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 441664..442328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_7a-0001-cdsEsuBft748_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 442329..442469 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_7a-0001-exonagat-five_prime_utr-13509Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_230 443714..443730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_7a-0001EsuBft748_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 442329..443713 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft748_7a-0001 ID=EsuBft748_7a-0001|Name=EsuBft748_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=904bp|location=Sequence derived from alignment at Scaffold_230:441664..443730- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGATGACCATGGCGAGATGCGAGTCGATGCACAGAACTGGGCAGCAGCA
GCGATAGAGAGCAAAAGCGACGAAAAGGAGATATCAAGAGCTATAAAGTC
GAAGTTCGAGGTCAAGTACGGCCCAACATGGCACTGTATCGTTGGCACGG
ACTTCAAAGCTTTCGTCACGCACGAGAGCAAGCACTTCGTTTTCTTCTAC
CACGGGAAAATGGCTTTCTGTCTGTACAAAGCCGGATAGCCATTGTCGGG
GGAAACCAAAGTGATCCGTGCGGTCACGGCCGGGGCAAGAGCTACATTGC
CGGGCGAGAGGGGCGGGAAGTTACTTGGGGGGGCTGCTTGCCTAAGCGCA
AGGGTATAAATACGTCGCCCCTCCTTAGGACACCCGTGGTTTCGTCGCAA
CATGTATCCTTATTCAGCCGGGGTATAGTCCTTAAGACTCGTACCCCCCC
CTATGATTGTACATCCTGCGGAGCACCACCATGCCTGTGTAAAAAAAACG
TGTCTTCACCGATGGCTGCACCGCTGTTACTCTTTTTGTAAAAGAATATT
GGTGTGTTTGCGGCGTGTGTCCGGCCCAACCCTGGATTTCGTTGCCGTGC
TTCTTTGGCGGGTAGTACAATATGATCCATCCGGTCACAATACAACGTCG
AGAGCTTCCGACGTTTGGTTCATTGCAGAGATTTTCTGGCTTGGAAAGTT
GTTTCAAGGCTTGCTTGAGCCTATCCTGCTGTCTCTTTGAGTAGTCTCCA
TTATATTCTTTCTTGGTTATTGTTCTTGAAGCGGTATGCGAATCCCCACC
CCTACAATGCTTTCGTTCTGCAGCGAGATGTAGAAGCATTCGACGCAGGT
CGTCGTCGGTGGGAGGGTACCGACGTGGACGAAAGCAGCCTGCGTGTTTG
AATA
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protein sequence of EsuBft748_7a-0001

>EsuBft748_7 ID=EsuBft748_7|Name=EsuBft748_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=73bp
MRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFV
THESKHFVFFYHGKMAFCLYKAG
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mRNA from alignment at Scaffold_230:441664..443730-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft748_7a-0001 ID=EsuBft748_7a-0001|Name=EsuBft748_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2067bp|location=Sequence derived from alignment at Scaffold_230:441664..443730- (Ectocarpus subulatus male Bft15b)
TGGATGACCATGGCGAGATGCGAGTCGATGCACAGAACTGGGCAGCAGCA
GCGATAGAGAGCAAAAGCGACGAAAAGGAGATATCAAGAGCTATAAAGGT
GTGCACCGTATCTACGGCCGAAGTATCGCAGTCGTCTCTCGCTACTGCTG
TCGACGCAAGCGGCTCCGGATAATCAGCTACCTGCGAAAATCATTCGCCG
AGAAGACAGGAGTATTCGTTCGAAACTTGCTGATTGGAGGGTGGCTCCTT
TCGTGGGGTTCGTCTGAACATCTGCTCACTCTACACCCCCTGACACCAGC
AACAGCACAGTATTAACGACCAAAAGGCATGCATTGTAGATATAAGGTGC
CACTGACATGGTTTGTTATGGCGTTACCACATGCTTTCGCAGCAAACTTT
TGGATTTCAACAATCTGATGACAAGCTTCGATATCAACGTACGGGTGAAC
AATGTGAAAATGCCTCCTATAAGCACGTCATGTGGGGTGCTACACACCTA
GGCAAGCGGGGGCTTCCCAGAAAGAAAGAAACAGAACGATGCAACATGTG
ACGCGTATGGTGAAGAAAGTTGCTGGTTCGACACTGATTCTCTGTTGAAT
CAATCTTAAATGGTTACGCGAGGCAGAGATTAGGAGGGATGGAAAGAGAC
AGAGAGAGAGGGGGAGGGAGGGAGAAATAAAAGATGGTCAATTTCCCCTA
CAGAAATAACGGTTGCTGTACTCACTTGGATATGATTGCTAGGCACAAAA
CGCTAAGAAGGAAGAAGCGAACATGTTGACAACATAGAATCAACGGCCCA
ATGTTGGCCGTATTTCTTGTATGTGGTAAAATGTCCACAGGACTAACAGA
ACGCGGGCGCTCCCTACCCCTGTGTAAATACCTGATCTACTGTAGTGTTA
CTCTCTTGTCTCTGTCAGCTGCCACATGCACACCCCAATGCCGGTCTCGA
CATGGAAACTACACTTGAGACATGGAAACCACACTTGATGTTATGTGGCA
TCGACGTGTACACCTTCGCAGAGCAGTTCAGTCTCACGTCACAGCCACCT
GTGGAGTTGCTACTCCAAGGGTCCGAGGGCACCATCAATGGCCTCTACAT
AGTCTATTGACCATCCCAAGAGCCAAGCTACTGTGCCAATATTTGAGGAA
TACCTAGCCTCGCGTTTTCAAAAAGGTGTGTACACCTTGCCTCTGCGTAT
TGGTTTCTTGGCCGTTTTCTTGAACGCTCGTCCCGCATTTGTTCAAAACC
CCTGCTGACAGTCGAAGTTCGAGGTCAAGTACGGCCCAACATGGCACTGT
ATCGTTGGCACGGACTTCAAAGCTTTCGTCACGCACGAGAGCAAGCACTT
CGTTTTCTTCTACCACGGGAAAATGGCTTTCTGTCTGTACAAAGCCGGAT
AGCCATTGTCGGGGGAAACCAAAGTGATCCGTGCGGTCACGGCCGGGGCA
AGAGCTACATTGCCGGGCGAGAGGGGCGGGAAGTTACTTGGGGGGGCTGC
TTGCCTAAGCGCAAGGGTATAAATACGTCGCCCCTCCTTAGGACACCCGT
GGTTTCGTCGCAACATGTATCCTTATTCAGCCGGGGTATAGTCCTTAAGA
CTCGTACCCCCCCCTATGATTGTACATCCTGCGGAGCACCACCATGCCTG
TGTAAAAAAAACGTGTCTTCACCGATGGCTGCACCGCTGTTACTCTTTTT
GTAAAAGAATATTGGTGTGTTTGCGGCGTGTGTCCGGCCCAACCCTGGAT
TTCGTTGCCGTGCTTCTTTGGCGGGTAGTACAATATGATCCATCCGGTCA
CAATACAACGTCGAGAGCTTCCGACGTTTGGTTCATTGCAGAGATTTTCT
GGCTTGGAAAGTTGTTTCAAGGCTTGCTTGAGCCTATCCTGCTGTCTCTT
TGAGTAGTCTCCATTATATTCTTTCTTGGTTATTGTTCTTGAAGCGGTAT
GCGAATCCCCACCCCTACAATGCTTTCGTTCTGCAGCGAGATGTAGAAGC
ATTCGACGCAGGTCGTCGTCGGTGGGAGGGTACCGACGTGGACGAAAGCA
GCCTGCGTGTTTGAATA
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Coding sequence (CDS) from alignment at Scaffold_230:441664..443730-

>EsuBft748_7a-0001 ID=EsuBft748_7a-0001|Name=EsuBft748_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=222bp|location=Sequence derived from alignment at Scaffold_230:441664..443730- (Ectocarpus subulatus male Bft15b)
ATGCGAGTCGATGCACAGAACTGGGCAGCAGCAGCGATAGAGAGCAAAAG
CGACGAAAAGGAGATATCAAGAGCTATAAAGTCGAAGTTCGAGGTCAAGT
ACGGCCCAACATGGCACTGTATCGTTGGCACGGACTTCAAAGCTTTCGTC
ACGCACGAGAGCAAGCACTTCGTTTTCTTCTACCACGGGAAAATGGCTTT
CTGTCTGTACAAAGCCGGATAG
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