EsuBft748_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft748_4a-0001
Unique NameEsuBft748_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:390388..395209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft748_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length79
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft748_4aEsuBft748_4aEctocarpus subulatus male Bft15bgeneScaffold_230 390388..395209 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_4a-0001-exonEsuBft748_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 390388..390776 -
EsuBft748_4a-0001-exonagat-exon-61320Ectocarpus subulatus male Bft15bexonScaffold_230 391583..391748 -
EsuBft748_4a-0001-exonagat-exon-61319Ectocarpus subulatus male Bft15bexonScaffold_230 394969..395209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_4a-0001-cdsEsuBft748_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 390388..390776 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_4a-0001-exonagat-five_prime_utr-13507Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_230 395101..395209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_4a-0001EsuBft748_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 390388..395100 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft748_4a-0001 ID=EsuBft748_4a-0001|Name=EsuBft748_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=796bp|location=Sequence derived from alignment at Scaffold_230:390388..395209- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGTTGTGTTTGCCTCGACAAACAAACCGCACGCCAAACGCGTTGCTGCT
GTGTGTGGAGCAGGAGAGAGTCGCACAGCGAGACAAAAGCGGCGATTTCT
TTTGGTGCCATGTCGTTCCGCGGGCGACCATCGCTCTCAGGGACTCCCGG
ACGCTCCTCGTTGGAGCCCAGCTCTGATTCTCTGGACCTTGCCAAGCTGC
GAGCAGATCTGGTTGCGGCACGCGAATTGACATGCTTTCAGGCGCGCCCG
GACTGCCAGAGCATGATCGACGACGTGTTGACGAGCTGCCTACCCCTGGC
AGCCATGGCGGAGTTCACTTCCGCAGCCCCAGCAGCCAGGCTAGGGGCCG
CCGCCGCAGATTCAGCGGCTGAAGCACAAGCAGAGGCGGCACCGGTAGAT
GCTAGTGTGGTTCCTCTCACGAGAACACCAGCAGCGGCCAGCAGCCTCGC
GGCAGCAGCAGCAGTATCAGCAGACGCGGACGCCGGTAGCGTCAGCAGCA
TGGACTGGGACCCTTCCCCGACCTCGAAACAGATCGCGATGCCCCCCTCT
TCCTCCTCAATCGGCGGGGGGGCGGGGAGAGGGGGGAGTGGTGTAAGTCG
GAGCGGAGGAGTTCAGGGAGGAGGAGGAGGAGTTCAGGGAGGAGGAGGAG
GAGGCGTGTTGTCGAGGAGGGCGTCGGGGTCGATATTCGCGGACAGGGTC
GGCATCACCAGGATTCCGGACCGGGCTTGGACTATCGCGCTTGACTACCT
AGAGTTGGGCGAGGTGGGTGGTATGGCAGGCGTCGAGAGCTGGTGA
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protein sequence of EsuBft748_4a-0001

>EsuBft748_4 ID=EsuBft748_4|Name=EsuBft748_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=228bp
MSFRGRPSLSGTPGRSSLEPSSDSLDLAKLRADLVAARELTCFQARPDCQ
SMIDDVLTSCLPLAAMAEFTSAAPAARLGAAAADSAAEAQAEAAPVDASV
VPLTRTPAAASSLAAAAAVSADADAGSVSSMDWDPSPTSKQIAMPPSSSS
IGGGAGRGGSGVSRSGGVQGGGGGVQGGGGGGVLSRRASGSIFADRVGIT
RIPDRAWTIALDYLELGEVGGMAGVESW
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mRNA from alignment at Scaffold_230:390388..395209-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft748_4a-0001 ID=EsuBft748_4a-0001|Name=EsuBft748_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4822bp|location=Sequence derived from alignment at Scaffold_230:390388..395209- (Ectocarpus subulatus male Bft15b)
TTGTTGTGTTTGCCTCGACAAACAAACCGCACGCCAAACGCGTTGCTGCT
GTGTGTGGAGCAGGAGAGAGTCGCACAGCGAGACAAAAGCGGCGATTTCT
TTTGGTGCCATGTCGTTCCGCGGGCGACCATCGCTCTCAGGGACTCCCGG
ACGCTCCTCGTTGGAGCCCAGCTCTGATTCTCTGGACCTTGCCAAGCTGC
GAGCAGATCTGGTTGCGGCACGCGAATTGACATGCTTTCAGGTAACAGCA
GCAGCAGAGAGAGAGTGTGGTTGAAACAAGTTAGCTTCTTGAACACCGCA
CCATCGGTAGCTCTCTTGGGGTGTAACCGAACAGAGGAGGAATGTATGTG
TGTTCTCCATTGCTTGTAGTAGGACTTGCTAATGTTGAGGGTGGTATGTT
TTCGCAAGTTCCTGCTGCTGAACCATAGCATACGCCCCCACATAACACCA
ACACCTAGTGCTTCGGGAGCTCTCTGTCCCGCCATCCTCTCTGTGTTGGT
CAAGGCTCTGTTCCGAGAGCTGTCCGTTGTATGACCACCGACAGCAACAT
CGCGCCGACAGCAGTCTGGCGCCAAACCGTAACAAAAACATCGTCCGTCC
GTCTGTTCGGTTGAACGCACCGCTGGCGGCGGCACATCTATGCGTACATA
CGTCAATGGTCCGCCCCTTCTAGCGTTGGCTAATTTTTTTTCATTGCAAG
CAAGCACCTCAGGAGTTGCAAGAGGTGGAAAATTCCTCCTGATGCTGTGC
CGCCGGCTGGTTGCGTGAAACGTACACCGAGAGCCGTAGTAGACTCTAAT
AGGCTGGCGCCACGGTACGACAATAACAAAAAATATATATGCATGGCTTC
GCACGTGAAAGCCACCGGAGGGCAAGCACCAAAAACTTGCGTGTGCGTGT
TCGTCCCATCTTCTCTGGCGCCGGTTTCCAGGCCTGTCGGCGCAACAACT
GTATACCTGGCGTATCAGCCGGGGTCACACCAAAGGAAGGTCACACAGAA
GCTTTTTGTCATACTTGGTATCATTTTTCTCGAAATAACCAACGAATCCA
TCTCTATAGAGAATAGTCCACGATAGAATAGCAATGATTTCGTAGAGCAC
CTGCGACCAAACGTGTTTCTACGGATTCCCGAGAAACACACGTCGATGTC
TCCCCTGTGGGTAATAGATCAATAAGACAGTCTGGTAGCCGTCTTGTGTA
TCTCTCCGTATGTTATGCGGGGAAGGTGCATTTTGTCATTTATTTTATTT
TATTTTATTGCCCCGCTCGTTCCCTGTGGTGCTTCCCTTAGTTTTTATCG
CGAACGGGTTTTTTTTTTAGCCATCCCCATTCCCTCCTTGGTACTCACAA
GGTTCCTCTTCGGGAGGTCGGTGCATGCATTCCCGGGGGTGACACAAGTC
GAAAAACACGAAGAGGGACTGAAAATCGTAGTGGGCATGGTATTAAAGAT
GGTCTACCGAACGGTGGCGTAGTGGAAAAAGGTCGGGTAGTATAAAACGT
CGCAGACGTTTTCAGCGGGAGGGTTGGGGTATGGCTGATAAGGTCTGGCC
GATCCATGCCATTTTGTGGTCTGGTGGCAAAGTTTCAGTAACTTCTGGCC
AAGAAGGTTGGAGTAAGGTCACCATCAAGGTAGGAGGGTCCATGCGCGCA
GCAACGGCCATTGCGTCTACCTGCTTTCTCTTTCTGTTAATGCAAGGCCC
GTGAAAAAATACAGGCGGTCGCCTGCCCACTGTTTTTATTCGGGGTGCAC
TTTCAATGGCGTTTTTTGGTGGCCATTATTTTATCTGGAAGCTGAGTTTG
AGCTGAGTTTGAGGTCACCTGTTGTTGCGTATTGGTCGCATGCCCCCTCC
TGTGCCATAGTATGTAGTTTTGCTGGAAGACGAGGTCTAGTTGTTCTGTT
AAGTGACTCTTTAGGTCTAACCGATGTTGCACTTTGCAAGACTAGGTTCC
TCACGCGAGCAAGGCTAGGTTCCTCACCCCACGTCTATCCTAACCTTAAC
CCTAACCCTCACCCACGGCCAAAGCATGGCCCAGCGGCCACGAACTGGTC
GAGAAAACGCTGCGCCGCGTTCTCGGAATGCGGAACAGCGAGAGGGCGCT
AGAGAGGTCCAAGGCTAGGAACCAACGGACCAATCAGAGTGCGTGAAACC
GCAAAGATAAAAAGAGTCACTAACAGGTTGCAAAAATTGCTGTGGAAGAA
AGGTTGTATCGTTAATCGCTGCCGCGTGTAGATTCGAGCTTTTCCTGTGG
TGGACAGTGTACGGTCTTGCCTTCCGTCTTCAAAATCACCTGGAGACCAT
CCGCCGTCTCCACAAGAATATAACAGAGGATACTGTAACGGAAGGCATGA
AGTCGTATAGATTGGAACTATGAAGTGTGGTTTGTCGCGTTCTTGCGGTG
GTCCGTTGCTTTGGTAGGTGTACACATGGCGCCTGCCTGGTATCGTCTGA
GTTATATTTGTACAGCAAGGCGGCTGGTTCTGTTCTTGCGGTGGGTTTAA
CTCGTGAAGTTCTGTAGAACAGAGATGCTCATGTTGTCTTCCTCGGAGTT
GTCCATCTCAAGGAGAAGAGCACGATATACTGCTTTTCCCATGAATGGTG
TTGGCGCAGTTGTCGCGCAATATTCTTTGCTGGTTCGCCGTCGAGGCGAA
GAGATCGGCCCGTGCTTTGTAGTTCGTGGTCGTCAATGTACATGTGAGCG
TTGTTTCGTGACGGCCGGGTGTGTTGTATGAATTTCTGAAGCTGTCCATG
ATACGGTGATACGGTCGGCCGTGTAACTTGAGCATTGCTGGTGGTTTCAC
TGGAACCGGGGCTTGCCACGGCTGGCACCGAGACACGTGAAAAAAAAAAA
GTGGTTGTACCTTAGCAGAACTACAAGCGTTCATAACACCCGCCGGCAAC
GGCTTCAACCTATGCACAGGGTACTTGCCCTGTTCGCGACAGGTGATACT
CTCTTCTTTCAACATTCTTGCGCTGCAATACTGGCAGGTCTTGCTACCCT
CATCGCTCAAAATCAAATACTTGCATCGAAAAGTGGTAGGCAGCTGCACG
CCTAGATCGCCGAACCTCAAAAACACCCAGCCGAGCAGAGTCATTTCTCC
TCCCTGGCACTCATCAACTTGTTCCGGCCTACTAAGCCGGCAGTCCTATG
TTCAAGGGTTAGGGTGCGCCGTAAAGCTCCGCAAGGAGGGGAAGACTGCT
ATCAACGCCACCGGCGACGAGCGGAAGGCGAAATACTCCGCGAAGAACGC
CGCGAAGAAGGCTGCCAGGGACGCCTTCTCGGAAGCTTCTACCAAGCAGC
CTCGCCAGGCGCTCGCCAAGGGCATCATGGTGGGAGCGGTGCGAAAACGG
TGCCGCAAGTGCAAGCGCACTGTTCTCTACACCCCCAAGTGCCGAGAGCC
TGGCCTGTGTTCTCTACACCCCCGCCCCGCCCGCCGTCGATGTACCTCTC
TGTTTTCACAGGCGCGCCCGGACTGCCAGAGCATGATCGACGACGTGTTG
ACGAGCTGCCTACCCCTGGCAGCCATGGCGGAGTTCACTTCCGCAGCCCC
AGCAGCCAGGCTAGGGGCCGCCGCCGCAGATTCAGCGGCTGAAGCACAAG
CAGAGGCGGCACCGGTAGATGCTAGTGGTGAGTCGCAGGGGGGGGGTGTT
ATCATGTAACTCATGCCGAAGTCGGGTTTTCGCCGGCCCAGGCTACGTTT
AACAAGGATGCACCAGCAAGTTGGTCATCATCCCTGCGTGTGCAGGGGGG
GGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGGTTTGGGGGGGGGGGGGGGGCAGGTTCTGCTTGTTTGATG
CTGAAAAAAGGGGAGTGCCTTGCTATGGTAGAATCCTGAAGAGCTGGGTG
TACGCTTTGGCTATGTTGGGATTCAAGTCTGTATTCTCTGTTCTCGCGTT
GTGAGTTTGGACGCGGAGTCGAAATAAAGACCGCGCGATGTATTTGGTAC
GATATGTCGGAGCATGATTGGTGCTACTGCTGTGAAGGCTGTGACACAAA
CGGTTGACGGGTTCGGGGGACGTGAATGCTCGGCAGGAGGCAGGAATATT
TTCACGTTCTTGTTTTGTCGACTTTCGGCGCATGACACCGTCCGCGTCTA
ACCACAAACCTTGCACCAATCATACGAGAGAAGGCGGTAGCATTCTTTTT
ACCCAAAATACTGCAGCGGGGGGAGGGAACGGCCGCTTGCCTCGGCAGAG
CGCTCGGCAGCACAATCGTCGCGTTATTATGTTATTTTTATTGGTCGTAG
CGCGGTCGTTACTAGTATCAAAGACGCACGCACAACACCATACAGCTCCC
CCTCTCCACACCCTATTCCCTCCATGACACAAGTGGTTCCTCTCACGAGA
ACACCAGCAGCGGCCAGCAGCCTCGCGGCAGCAGCAGCAGTATCAGCAGA
CGCGGACGCCGGTAGCGTCAGCAGCATGGACTGGGACCCTTCCCCGACCT
CGAAACAGATCGCGATGCCCCCCTCTTCCTCCTCAATCGGCGGGGGGGCG
GGGAGAGGGGGGAGTGGTGTAAGTCGGAGCGGAGGAGTTCAGGGAGGAGG
AGGAGGAGTTCAGGGAGGAGGAGGAGGAGGCGTGTTGTCGAGGAGGGCGT
CGGGGTCGATATTCGCGGACAGGGTCGGCATCACCAGGATTCCGGACCGG
GCTTGGACTATCGCGCTTGACTACCTAGAGTTGGGCGAGGTGGGTGGTAT
GGCAGGCGTCGAGAGCTGGTGA
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Coding sequence (CDS) from alignment at Scaffold_230:390388..395209-

>EsuBft748_4a-0001 ID=EsuBft748_4a-0001|Name=EsuBft748_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=687bp|location=Sequence derived from alignment at Scaffold_230:390388..395209- (Ectocarpus subulatus male Bft15b)
ATGTCGTTCCGCGGGCGACCATCGCTCTCAGGGACTCCCGGACGCTCCTC
GTTGGAGCCCAGCTCTGATTCTCTGGACCTTGCCAAGCTGCGAGCAGATC
TGGTTGCGGCACGCGAATTGACATGCTTTCAGGCGCGCCCGGACTGCCAG
AGCATGATCGACGACGTGTTGACGAGCTGCCTACCCCTGGCAGCCATGGC
GGAGTTCACTTCCGCAGCCCCAGCAGCCAGGCTAGGGGCCGCCGCCGCAG
ATTCAGCGGCTGAAGCACAAGCAGAGGCGGCACCGGTAGATGCTAGTGTG
GTTCCTCTCACGAGAACACCAGCAGCGGCCAGCAGCCTCGCGGCAGCAGC
AGCAGTATCAGCAGACGCGGACGCCGGTAGCGTCAGCAGCATGGACTGGG
ACCCTTCCCCGACCTCGAAACAGATCGCGATGCCCCCCTCTTCCTCCTCA
ATCGGCGGGGGGGCGGGGAGAGGGGGGAGTGGTGTAAGTCGGAGCGGAGG
AGTTCAGGGAGGAGGAGGAGGAGTTCAGGGAGGAGGAGGAGGAGGCGTGT
TGTCGAGGAGGGCGTCGGGGTCGATATTCGCGGACAGGGTCGGCATCACC
AGGATTCCGGACCGGGCTTGGACTATCGCGCTTGACTACCTAGAGTTGGG
CGAGGTGGGTGGTATGGCAGGCGTCGAGAGCTGGTGA
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