EsuBft748_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft748_2a-0001
Unique Name	EsuBft748_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_230	contig	Scaffold_230:364277..371842 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	3218.PP1S269_59V6.3
ProteomeId	EsuBft748_2
Protein domains	IPR006809
Protein domains	IPR009072
Owner	apollo_admin@sb-roscoff.fr
Note	transcription initiation factor tfiid subunit 11b os:arabidopsis thaliana gn:taf11b pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	35493\|Streptophyta
Length	1143
Hectar predicted targeting category	other localisation
Evalue	2.21e-08
EggNOG OGs	COG5251@1\|root,KOG3219@2759\|Eukaryota,37TWR@33090\|Viridiplantae,3GGBH@35493\|Streptophyta
Ec32 ortholog description	TAFII28-like protein
Ec32 ortholog	Ec-19_003200.1
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K03135
KEGG Pathway	ko03022,map03022
GOs	GO:0000428,GO:0003674,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0006139,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2001141
Description	Transcription initiation factor TFIID subunit
COG category	K
BRITE	ko00000,ko00001,ko03021

Cross References

External references for this mRNA


Database	Accession
GO	0005515
GO	0006367
GO	0046982

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft748_2a	EsuBft748_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_230 364277..371842 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft748_2a-0001	EsuBft748_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_230 364354..371451 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft748_2a-0001-exon	agat-exon-61308	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 364277..364566 +
EsuBft748_2a-0001-exon	EsuBft748_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 365999..366109 +
EsuBft748_2a-0001-exon	agat-exon-61306	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 366600..366735 +
EsuBft748_2a-0001-exon	agat-exon-61307	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 371237..371842 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft748_2a-0001-exon	agat-five_prime_utr-13503	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_230 364277..364353 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft748_2a-0001-cds	EsuBft748_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_230 364354..364566 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft748_2a-0001-exon	agat-three_prime_utr-21000	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_230 371452..371842 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_230:364277..371842+
coding sequence from alignment at Scaffold_230:364277..371842+

spliced messenger RNA

>EsuBft748_2a-0001 ID=EsuBft748_2a-0001|Name=EsuBft748_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1143bp|location=Sequence derived from alignment at Scaffold_230:364277..371842+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAAACAGAGCCGACGGAGACGAGGAGCAAGGGACAGACAGACACAGGCAC
CGTCACCCGCACTGCTTAGCAACAAGCATGGACGGAGATGGAGATATCTT
GGGGATGCGACGGCGGCCTGAACCAGCCCAACCGGCTGAACCAACAACAG
CTTCGGCGGGTAATCCCGCCGCTGTTGCTGATGCGGCGCCCGAAGCAGCA
GCGGCAGCTGCAAGGCATGCCGCCGGTGCTAGCCCGTTGAAAAGGAAGCG
GTCTCTAGCAGCGGGGGCAGCGACCAGAGCAGAATTTCAGGTTGTTGAGA
GCGTGGCCGGCGAGGTGCCCGTGGATCAGCTCAACCCGGAACAGCTTCAG
AGGTACAAGGCCTGGGTGCGGAGTCGATTCGAGCGTGCCCCCATCCGCGA
ACTCATTCTGGACCAGGCGGCCCCTACCCTCGTGCGGAGCATCGAGAGTG
GGCAGGGTAGGGGAGTGGTGCAAGAGACGTCCACCATCGCCGTGGCGTCG
ATGGCCAAGCAGTTCGTCGGAGATCTCGTAGAAGAAGCCAAGCGTGCACA
ACTGGAGAGGGGAGACGCAGGGCCGCTGAAACCGAGCGACCTGTTGAAGG
CGCGGGAGACCCTGGCGAGGGATGGACGGGGCCCGCCGCTGCGATCGCCT
ACGACGCGTGACCGCGGGTTGGCGGGCGTGCAGGGCAGAAACGGCGGCGG
CGGGAGTTTATTGGGAGGGCCAGGCGTGCTGACAAGAGGCAACCCTATTT
GATTCGAAAGAAAGGGGGATGCCGTCTGTTTATGGGTGCAGGAGGGGGAG
AAAAGAGGGTGTGTCTGTTGCTGTGCATCGTGTGGTTGCGATGCTGACGC
CATTTTGTCTTTTTTGTGTCAAATATGTACAAGTTCAAATAGAAAAGCAG
CGTGTGAAAAAACCTTTCGATGGGTGTGGTGGCGTCAAGACTGTACATGA
GCGCACTGCAATAGAAATAGCAAAACATGTGTTTGTACCTTGTGCATTTT
TTTCCGTTTCGGTTGTTGTGTTGTTCACGCTGCTCATCTTGGGCACGTGC
AGCGTACAGAACGATCGATTCCGGGTGTGATCGGGAAGGGAGGCATCAAT
CAAACCACGTTGCGCAGGGTAACGCGCCTTACAGAACGCCGTC

protein sequence of EsuBft748_2a-0001

>EsuBft748_2 ID=EsuBft748_2|Name=EsuBft748_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=224bp
MDGDGDILGMRRRPEPAQPAEPTTASAGNPAAVADAAPEAAAAAARHAAG
ASPLKRKRSLAAGAATRAEFQVVESVAGEVPVDQLNPEQLQRYKAWVRSR
FERAPIRELILDQAAPTLVRSIESGQGRGVVQETSTIAVASMAKQFVGDL
VEEAKRAQLERGDAGPLKPSDLLKARETLARDGRGPPLRSPTTRDRGLAG
VQGRNGGGGSLLGGPGVLTRGNPI

mRNA from alignment at Scaffold_230:364277..371842+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft748_2a-0001 ID=EsuBft748_2a-0001|Name=EsuBft748_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=7566bp|location=Sequence derived from alignment at Scaffold_230:364277..371842+ (Ectocarpus subulatus male Bft15b)
AAAACAGAGCCGACGGAGACGAGGAGCAAGGGACAGACAGACACAGGCAC
CGTCACCCGCACTGCTTAGCAACAAGCATGGACGGAGATGGAGATATCTT
GGGGATGCGACGGCGGCCTGAACCAGCCCAACCGGCTGAACCAACAACAG
CTTCGGCGGGTAATCCCGCCGCTGTTGCTGATGCGGCGCCCGAAGCAGCA
GCGGCAGCTGCAAGGCATGCCGCCGGTGCTAGCCCGTTGAAAAGGAAGCG
GTCTCTAGCAGCGGGGGCAGCGACCAGAGCAGAATTTCAGGTGAGCAAAG
CGTGATCTGCTCCCTGTGGTTGTTGAACGAAAACCGATCTGTGCAATGAT
TTGCGCACGGAGTGTTCTTTTGCTCATGTCGTTGGGATTGTCGGTCCCAT
GTGCATGCCGGCGCGCGCCGATTTTCACCACGAGGTCCGTGCTACGACAA
AAATCTGTGGATCAATTCCCACTCTGGACGCCACATGATTGCACGGATGA
AAACGCTTTCATAACCGGTGAGGCTATTTTTGGGCCAGGCCCGGTATTGC
CGAACGCCTGCGTAGAATTGAGGTAATCTACGTTTGCGGACCTCCCCAAA
AATTCAAACTTCCGGTGGTTGTTTCCTCGCCCCCCTCGCCCCCTCCCCGT
GCTACTAATACCTTCGACCTATAGCAGTAGTGCTGTGTGAGCACCATGAG
GCTGATTCCCGCAACAAAGTGGATGCGGCGGTCGTCGAGGCAAATGGGAA
GCGCCTTGGAAAGAGCGGTTCTTGTTCTCTGCCGCTTTGCTCTGCTGTGT
GCATAGTGGGCGCTGATGCAGGACAACGCCCCTCGACAGAAACAACTGCT
GTGACGGCAGCGCGAACGGGATCTGCCGCAAGGATGCGAGAGATGGCACC
TACCCTACAGAGTAGACCGACAACCTATGCTCGTAATCCCCACAAACAAG
TGGGTGCGAAAAGAGTCCGATACGTCTACGGAAAGCCCCGGACGACAAGT
TTTCCCCAAACCACTATGTTTTGGAGTTGGCACAAGCTTGGCTGAGGAGC
AAGCGAGCTTTGAAGATCGGTCTACTTGAACGGGGGGTACCGTATCTCGC
AACCTTACGGTGGTACTCACGTACTTGTTGCTTGATTCCGAAAACGTATC
GTCAAGGCTCAATAAGTAGGTGATACACAACGCCGGACTTTCGTAGCCTA
AGGTTGTACATACGAGGGAATTTTTAGTTCGTCAGCAACGAACTCGCCAG
CCACCCCCTGGCCGTTCAAACGACGAAAGAGCGAGTGGTATTATCGACAG
CGGAGAGAGACCACCGACAAACGCAAACGCGGAGAAAGCGTGCACGTGGT
TCTTTTCAGATCGCGCCGACCGCGCTCTCCGTCCGGCTGACCAATGAAAA
TAAGCCGTTCCTAAAGGTCGAAAAACGCACACGCGCAGAATGCAGTTTCG
AAACCGCCTTTTATGCACATGTGGTGCGTGTGTGGATGCACATACGTCCG
GCTGACCAATGAAAACAAGCCAATCCTAAAGGGAACAACGTACACGCGCA
GAACGCAGTTTCAAAAACCGCCGTACCTTTGCATATGTGGTGTGTGTGTG
GGTGCACACGTGCACCCCGATTGTGTTGCACACCTACAAGAGGAACGAAG
CAACGCCTACCCACGCGAAGAACGAATTTCGAAAATGGCCGCATGCCGTG
TGTGTCGCTCCAACGCCACAAGGTTGTTGAGAGCGTGGCCGGCGAGGTGC
CCGTGGATCAGCTCAACCCGGAACAGCTTCAGAGGTACAAGGCCTGGGTG
CGGAGTCGATTCGAGCGTGCCCCCATCCGCGAAGTAAGCCCACCCGCCGC
CGCCGCGGCTCACGCGCCGAGCTTGGCTCAGTGTGTGATCGTTCACTTTT
TAGTTGTGCGCGAATTCGCGTGTACCCCGTGATGCCACTGTTCAAGTCGA
TTGCGCGCTGCTGTTAGTCGTGAGTGGACAGGAGGCAATTATTGCTGCTC
TGTTCTCCGCTCCATTTGTTCGGTTGCTTGTTGTTGCCATTCGCAGCCAC
GCGGCGTCGTTTGTTTCTTGATGTTTTGTTGCGGAACAAGAGGTACTCAT
CGAGGTCATGGCCGTTTTTCTGTGAAGACAAACAGCAGCAACAAGTTTGC
CTGCCTATTCCAACGACAACGAGAAGTGGCAAGCAACGAACACCAACATG
TTCGTGCGTTGTTCGCCGTTGCTGCTTTCTTCGCGTTCAACGCGACCGTC
ATGAGATCTAGCCGATGTACGCCCACCCCCACATCATCCCACGTGCTGGT
CGACCCCCCCCCGCCCGCCGTAGCTCATTCTGGACCAGGCGGCCCCTACC
CTCGTGCGGAGCATCGAGAGTGGGCAGGGTAGGGGAGTGGTGCAAGAGAC
GTCCACCATCGCCGTGGCGTCGATGGCCAAGCAGTTCGTCGGAGATCTCG
TAGAAGAAGGTATGATGGCATGCACACACATCTTGCCCTTTCGCCTCCCA
TTCGACAGCAAAGAGGTGGTTAGAACGCCCTCTGCATGTGCACGCTAAAA
CGAGCTGTCCTTTCTTCCAGAGACTACAAAGGAAAGATGAATAGACGTGG
GGCGTGCTGCACGTCGGGGAATGGAATGACATGCTGTGCGGATGGTTCTT
TTTCGGGGGGGGGCGGGAGGTCCCAAGTCACCGCTAGTCCGGTTTTTCTC
TGCCGTGTTGCTGGGAACGACCGACGCCGATGGTGTGTCTGTTGTTGTCC
CGTCATTGTTGTTCATGGCTGTTGTCGTCCTTGTCGGCGTTGCCTTCGTG
TTGAGAAACCGTTCTGACTTACCAAACAGCCTACATACACACACCCGTGC
TATCGGAGCGTTGAAGTTGAAGCAGTCAAGTGTTTCCGTGGTCTCTCTTA
AGCCGAAGTAGACTAAATACCTTGATCGAGAGACCACCGCCGTAGCAATA
CAATGGGATACAGCTACCATGTTCCAATAAGCTGCGCACCCTTCTCCTAT
AACTGACCGGAGTTTTAGGTGCCTGGCTCGTGGCATTCTGTTTTGAAATC
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ATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGG
GACATGGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGACGA
AGACGACCAGCTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTC
ATGTAGTCGCGGAATGTCCGTGGTACAAGAAGGAGAGGGAAGTGTACGTG
GCTGAGCTGGGACAAATAGATGGGACGTAAAGGGAGATGTTTGAGGCAGG
GAATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGAGTTG
AAAAGGTGGGAAGGGATGTCGTTAGGATGGACAGACTAGGGAAGACATTT
TTGAGCCACCTTTTGGCAAAGTAGGAAGGAACGATTGGCCATCGGTGATC
GTTCCTGNAAGGAGAGGGAAGTGTACGTGGCTGAGCTGGGACAAATAGAT
GGGACGTAAAGGGAGATGTTTGAGGCACGGAAAAGAGAGGAAAGGACGGT
AGCTGTACTGGGGCATAGGAGGTGAGTTGAAAAGGTGGGAAGGGATGTCG
TTAGGATAGACAGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGT
AGGAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCC
GTCCTCNGCTGTTCCTGCGTGCGCCGGTGCAAACCCGTAATTAAAAAAGG
TAAAAACGACAGGCAAGAAGCGTGGGATGTACCCCAGCAAACTGCGCACC
ATTTCTCCAAATGCAAGATCACCGGAGTTTTAGGTGTCTGGCTCGTGGCA
TTCTGAGGTTGCAATCTTCCGTTTATTTTGTTTTTTTTTCTGAGATTCCC
CCCCACCCCCCCCTCCTTCGTATCCCAAGAAGCTGCGCACCACTTGTCCA
AAACTGAGCGGAGTCTCGGGTCTCTGGCTCGCGGCATTCTTCCGTTTTTT
TTTAGATCCCCTCCCCCCCCCCTTTTTGCACCGTCGCAAACCTGGCAACA
AAAAAATCAGCCAAGCGTGCACAACTGGAGAGGGGAGACGCAGGGCCGCT
GAAACCGAGCGACCTGTTGAAGGCGCGGGAGACCCTGGCGAGGGATGGAC
GGGGCCCGCCGCTGCGATCGCCTACGACGCGTGACCGCGGGTTGGCGGGC
GTGCAGGGCAGAAACGGCGGCGGCGGGAGTTTATTGGGAGGGCCAGGCGT
GCTGACAAGAGGCAACCCTATTTGATTCGAAAGAAAGGGGGATGCCGTCT
GTTTATGGGTGCAGGAGGGGGAGAAAAGAGGGTGTGTCTGTTGCTGTGCA
TCGTGTGGTTGCGATGCTGACGCCATTTTGTCTTTTTTGTGTCAAATATG
TACAAGTTCAAATAGAAAAGCAGCGTGTGAAAAAACCTTTCGATGGGTGT
GGTGGCGTCAAGACTGTACATGAGCGCACTGCAATAGAAATAGCAAAACA
TGTGTTTGTACCTTGTGCATTTTTTTCCGTTTCGGTTGTTGTGTTGTTCA
CGCTGCTCATCTTGGGCACGTGCAGCGTACAGAACGATCGATTCCGGGTG
TGATCGGGAAGGGAGGCATCAATCAAACCACGTTGCGCAGGGTAACGCGC
CTTACAGAACGCCGTC

Coding sequence (CDS) from alignment at Scaffold_230:364277..371842+

>EsuBft748_2a-0001 ID=EsuBft748_2a-0001|Name=EsuBft748_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=675bp|location=Sequence derived from alignment at Scaffold_230:364277..371842+ (Ectocarpus subulatus male Bft15b)
ATGGACGGAGATGGAGATATCTTGGGGATGCGACGGCGGCCTGAACCAGC
CCAACCGGCTGAACCAACAACAGCTTCGGCGGGTAATCCCGCCGCTGTTG
CTGATGCGGCGCCCGAAGCAGCAGCGGCAGCTGCAAGGCATGCCGCCGGT
GCTAGCCCGTTGAAAAGGAAGCGGTCTCTAGCAGCGGGGGCAGCGACCAG
AGCAGAATTTCAGGTTGTTGAGAGCGTGGCCGGCGAGGTGCCCGTGGATC
AGCTCAACCCGGAACAGCTTCAGAGGTACAAGGCCTGGGTGCGGAGTCGA
TTCGAGCGTGCCCCCATCCGCGAACTCATTCTGGACCAGGCGGCCCCTAC
CCTCGTGCGGAGCATCGAGAGTGGGCAGGGTAGGGGAGTGGTGCAAGAGA
CGTCCACCATCGCCGTGGCGTCGATGGCCAAGCAGTTCGTCGGAGATCTC
GTAGAAGAAGCCAAGCGTGCACAACTGGAGAGGGGAGACGCAGGGCCGCT
GAAACCGAGCGACCTGTTGAAGGCGCGGGAGACCCTGGCGAGGGATGGAC
GGGGCCCGCCGCTGCGATCGCCTACGACGCGTGACCGCGGGTTGGCGGGC
GTGCAGGGCAGAAACGGCGGCGGCGGGAGTTTATTGGGAGGGCCAGGCGT
GCTGACAAGAGGCAACCCTATTTGA