EsuBft748_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft748_11a-0001
Unique NameEsuBft748_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:468515..470166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FYY1
ProteomeIdEsuBft748_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length114
Hectar predicted targeting categoryother localisation
Evalue2.76e-63
EggNOG OGsCOG0515@1|root,KOG4250@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K05410
KEGG Pathwayko04014,ko04137,ko04620,ko04621,ko04622,ko04623,ko04657,ko05160,ko05161,ko05162,ko05164,ko05165,ko05167,ko05168,ko05169,map04014,map04137,map04620,map04621,map04622,map04623,map04657,map05160,map05161,map05162,map05164,map05165,map05167,map05168,map05169
EC2.7.11.10
DescriptionIkappaB kinase activity
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft748_11aEsuBft748_11aEctocarpus subulatus male Bft15bgeneScaffold_230 468515..470166 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_11a-0001-exonagat-exon-61371Ectocarpus subulatus male Bft15bexonScaffold_230 468515..469653 -
EsuBft748_11a-0001-exonEsuBft748_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 470161..470166 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_11a-0001-exonagat-three_prime_utr-20999Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 468515..468654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_11a-0001-cdsEsuBft748_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 468655..469653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_11a-0001EsuBft748_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 468655..470166 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft748_11a-0001 ID=EsuBft748_11a-0001|Name=EsuBft748_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1145bp|location=Sequence derived from alignment at Scaffold_230:468515..470166- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAACCGTGCCTCAGGCGTCGACGTCGGGATTGCGAACTTTCATCC
CTTCGTGGACCGGGCCGAGCCCGTTAAGGTCAGGGCCGTGGTCATCCAGG
ACGTGACTGAACGCCAAGTGTTCACGATGGTGGAAGAAGGCTGCGCGCTG
GCGCGGGCGGCCGGCGTCGCCCTCGGCGGAAGCGGGAGCGGCGGCGGGGC
GAGCTCGCCAATGCGACCGGACGGAAGCGCCATCATCATCAACAACGATA
ACAGCGCTCGAGGCACGCTCGTCCTGCTCCAGCTTCAGACAGGCAGGCAG
GTTGTTTGCATCGATTCGTTGGGGCGGGCGGTACCGCTCTGCAATTGGGC
AACGATCCGGCGCCCCCCGCAGCAGCTTGCTGCGAGGCGGAGGATGCTGA
AGCGCATCGTCATGGGGAAAGAGCAAATGGCGCCCGCCGGGACCTCCTAC
AGCAGCACCCGCAGCGTCGCCAGCAGCGGTGTCAGGGACATGGGGAGCCA
CGCACCTCAGGATCTGGGCGCCGTCGCTAGCCCCGCCACGGATGTTGCCA
AGCCACACCTGCTTCCCTCCGCGATGTCGACGGTCGCCAAGCTCAACGGC
GGTCCTCTCGGTGGTGCAAGGCCGGCCATCATGATTGTCACGGCGACGGA
GACGCTGGCGGCGGCGGTGCCGGCGGCGGTGTTGAGCCTGACCTCCTCGA
CACCAGTTAAGTCTTCCGCCCCCGTGTGCAAGACTGGGGGAAAGTACACC
ACCGATGTGACCCCGCGACTGCTGCCGTCGTCGGAGCCAATGTCGACGGC
CGCCCCCTCCTGCGGAAGGTCCACCTCTCCCCGGGCACGCGGCGGGCGCC
CGCCTTCCCCGTGTCGGGCGACGCCATCTCTCTCCCGCTCCCCATTTCTA
CAATGCTCAGGCACAGTCGTGCGCGCGGCAGCGGTGGATGCGTCTTCTTG
GTCCGCTGCTGCTCGGCCGGCCGCCTCGAGTCTGGGAGGGGATTTCAGCT
CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft748_11a-0001

>EsuBft748_11 ID=EsuBft748_11|Name=EsuBft748_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=335bp
MKNRASGVDVGIANFHPFVDRAEPVKVRAVVIQDVTERQVFTMVEEGCAL
ARAAGVALGGSGSGGGASSPMRPDGSAIIINNDNSARGTLVLLQLQTGRQ
VVCIDSLGRAVPLCNWATIRRPPQQLAARRRMLKRIVMGKEQMAPAGTSY
SSTRSVASSGVRDMGSHAPQDLGAVASPATDVAKPHLLPSAMSTVAKLNG
GPLGGARPAIMIVTATETLAAAVPAAVLSLTSSTPVKSSAPVCKTGGKYT
TDVTPRLLPSSEPMSTAAPSCGRSTSPRARGGRPPSPCRATPSLSRSPFL
QCSGTVVRAAAVDASSWSAAARPAASSLGGDFSSX
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mRNA from alignment at Scaffold_230:468515..470166-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft748_11a-0001 ID=EsuBft748_11a-0001|Name=EsuBft748_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1652bp|location=Sequence derived from alignment at Scaffold_230:468515..470166- (Ectocarpus subulatus male Bft15b)
ATGAAGGTACGATGTAGCCAAAGTTTCCGTCACATGGGAACGCTTGTGTG
TCTTGCATCAATGCTCTGATACCCCCGCCAGCCTTTCGGTGCCGCTTGCG
TTTGTATCTCATGCTTACCATAGTGTCGGTGTTGTAGTGCCTCTTCGACA
TCTCCCTCCGTGATGTCCTCAGCCACGCTACTCTCGCAGAAGCGTGACGG
AGTTGACCTTTCCGCCCTGTCGGCGCGCGACGTGAGTCGTCAACAACGTC
AGGGAAGTAGATGTCTCGGAGTTTGTGAAACGAACATGCTGGTATAGGGT
GCAAAGATACACCCGCGCGCCACCTGCTACATGGATGTTTCACGCGTGAT
CGGCTAGCACGGCCCGATATCCCTGTAGTGCACAACAAGCTCAACGACAA
GCTCGTGACGAACGCCTGAAACGAATATTAATCTTTCCCCGTGAACACAC
GATCCCCCCCCACCACCCCGAACATACGTTCTCCACCGCCAACACGCTGC
ACGTCTTCAACAGAACCGTGCCTCAGGCGTCGACGTCGGGATTGCGAACT
TTCATCCCTTCGTGGACCGGGCCGAGCCCGTTAAGGTCAGGGCCGTGGTC
ATCCAGGACGTGACTGAACGCCAAGTGTTCACGATGGTGGAAGAAGGCTG
CGCGCTGGCGCGGGCGGCCGGCGTCGCCCTCGGCGGAAGCGGGAGCGGCG
GCGGGGCGAGCTCGCCAATGCGACCGGACGGAAGCGCCATCATCATCAAC
AACGATAACAGCGCTCGAGGCACGCTCGTCCTGCTCCAGCTTCAGACAGG
CAGGCAGGTTGTTTGCATCGATTCGTTGGGGCGGGCGGTACCGCTCTGCA
ATTGGGCAACGATCCGGCGCCCCCCGCAGCAGCTTGCTGCGAGGCGGAGG
ATGCTGAAGCGCATCGTCATGGGGAAAGAGCAAATGGCGCCCGCCGGGAC
CTCCTACAGCAGCACCCGCAGCGTCGCCAGCAGCGGTGTCAGGGACATGG
GGAGCCACGCACCTCAGGATCTGGGCGCCGTCGCTAGCCCCGCCACGGAT
GTTGCCAAGCCACACCTGCTTCCCTCCGCGATGTCGACGGTCGCCAAGCT
CAACGGCGGTCCTCTCGGTGGTGCAAGGCCGGCCATCATGATTGTCACGG
CGACGGAGACGCTGGCGGCGGCGGTGCCGGCGGCGGTGTTGAGCCTGACC
TCCTCGACACCAGTTAAGTCTTCCGCCCCCGTGTGCAAGACTGGGGGAAA
GTACACCACCGATGTGACCCCGCGACTGCTGCCGTCGTCGGAGCCAATGT
CGACGGCCGCCCCCTCCTGCGGAAGGTCCACCTCTCCCCGGGCACGCGGC
GGGCGCCCGCCTTCCCCGTGTCGGGCGACGCCATCTCTCTCCCGCTCCCC
ATTTCTACAATGCTCAGGCACAGTCGTGCGCGCGGCAGCGGTGGATGCGT
CTTCTTGGTCCGCTGCTGCTCGGCCGGCCGCCTCGAGTCTGGGAGGGGAT
TTCAGCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NN
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Coding sequence (CDS) from alignment at Scaffold_230:468515..470166-

>EsuBft748_11a-0001 ID=EsuBft748_11a-0001|Name=EsuBft748_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1005bp|location=Sequence derived from alignment at Scaffold_230:468515..470166- (Ectocarpus subulatus male Bft15b)
ATGAAGAACCGTGCCTCAGGCGTCGACGTCGGGATTGCGAACTTTCATCC
CTTCGTGGACCGGGCCGAGCCCGTTAAGGTCAGGGCCGTGGTCATCCAGG
ACGTGACTGAACGCCAAGTGTTCACGATGGTGGAAGAAGGCTGCGCGCTG
GCGCGGGCGGCCGGCGTCGCCCTCGGCGGAAGCGGGAGCGGCGGCGGGGC
GAGCTCGCCAATGCGACCGGACGGAAGCGCCATCATCATCAACAACGATA
ACAGCGCTCGAGGCACGCTCGTCCTGCTCCAGCTTCAGACAGGCAGGCAG
GTTGTTTGCATCGATTCGTTGGGGCGGGCGGTACCGCTCTGCAATTGGGC
AACGATCCGGCGCCCCCCGCAGCAGCTTGCTGCGAGGCGGAGGATGCTGA
AGCGCATCGTCATGGGGAAAGAGCAAATGGCGCCCGCCGGGACCTCCTAC
AGCAGCACCCGCAGCGTCGCCAGCAGCGGTGTCAGGGACATGGGGAGCCA
CGCACCTCAGGATCTGGGCGCCGTCGCTAGCCCCGCCACGGATGTTGCCA
AGCCACACCTGCTTCCCTCCGCGATGTCGACGGTCGCCAAGCTCAACGGC
GGTCCTCTCGGTGGTGCAAGGCCGGCCATCATGATTGTCACGGCGACGGA
GACGCTGGCGGCGGCGGTGCCGGCGGCGGTGTTGAGCCTGACCTCCTCGA
CACCAGTTAAGTCTTCCGCCCCCGTGTGCAAGACTGGGGGAAAGTACACC
ACCGATGTGACCCCGCGACTGCTGCCGTCGTCGGAGCCAATGTCGACGGC
CGCCCCCTCCTGCGGAAGGTCCACCTCTCCCCGGGCACGCGGCGGGCGCC
CGCCTTCCCCGTGTCGGGCGACGCCATCTCTCTCCCGCTCCCCATTTCTA
CAATGCTCAGGCACAGTCGTGCGCGCGGCAGCGGTGGATGCGTCTTCTTG
GTCCGCTGCTGCTCGGCCGGCCGCCTCGAGTCTGGGAGGGGATTTCAGCT
CTNNN
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