EsuBft741_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft741_6a-0001
Unique NameEsuBft741_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:753990..756692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRA5
ProteomeIdEsuBft741_6
Protein domainsPTHR10663
Ownerapollo_admin@sb-roscoff.fr
Notearf guanine-nucleotide exchange factor gnom os:arabidopsis thaliana gn:gn pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length494
Hectar predicted targeting categoryother localisation
Evalue2.56e-80
EggNOG OGsCOG5307@1|root,KOG0928@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K18442,ko:K18443
KEGG Pathwayko04144,map04144
GOsGO:0000137,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0005829,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006914,GO:0006996,GO:0007010,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0019898,GO:0019899,GO:0030029,GO:0030036,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0065007,GO:0065009,GO:0071840,GO:0097708,GO:0098772,GO:0098791
Descriptionregulation of ARF protein signal transduction
COG categoryL
BRITEko00000,ko00001,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0043231
GO0050794
GO0006996
GO0009887
GO0016192
GO0009888
GO0040007
GO0048869
GO0007049
GO0007389
GO0016020
GO0009793
GO1902582
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft741_6aEsuBft741_6aEctocarpus subulatus male Bft15bgeneScaffold_195 753990..756692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_6a-0001EsuBft741_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 753990..756669 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_6a-0001-exonEsuBft741_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 753990..754161 -
EsuBft741_6a-0001-exonagat-exon-66229Ectocarpus subulatus male Bft15bexonScaffold_195 754799..754934 -
EsuBft741_6a-0001-exonagat-exon-66230Ectocarpus subulatus male Bft15bexonScaffold_195 756226..756307 -
EsuBft741_6a-0001-exonagat-exon-66231Ectocarpus subulatus male Bft15bexonScaffold_195 756589..756692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_6a-0001-cdsEsuBft741_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 753990..754161 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_6a-0001-exonagat-five_prime_utr-13463Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 756670..756692 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft741_6a-0001 ID=EsuBft741_6a-0001|Name=EsuBft741_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=494bp|location=Sequence derived from alignment at Scaffold_195:753990..756692- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGCGGCACCTGCAGGTCGTATGGCGAGACGAGATGTGCTGTGCGAG
ATTCAAAGTGTTCTGGACGCGCTTAGACGCAACGCACGGTTCGAGATCAC
AGAGCATCGCTCCGCTGCGGAGGAAAGCCGGCTGACTGCCGACTTGAAGG
CCCTGCGAGAAGCTGTCCGCGACTGGCCAAACGAGGACCTCCGCGGCTTG
AGCAGGCTGGAGTTGGTCTCCCCGTTCCTGTCGGTTGTGCGGTCCCCTGA
AACCAACGGAGTCCTTACGGAGGCTGCGCTGAGATCGCTGCAGGCGTTTT
CACGCGACCGCCTGATAGGTGGGTTCGAGGAGACCCAGCAGGACCATGAC
GAGGCGGTCCGAGCGAGAATCATGCACGTCTTGGCGGCGTGCCTGGAGGG
CGGGGCCGGGGTGTGCCTGTCGGACGAGGTGGTCTGGGCGGTGCTGCAGA
CGTGCATGGCCAACCTCGACCAAATGGTGCGAGGCTGCTGGTAG
back to top

protein sequence of EsuBft741_6a-0001

>EsuBft741_6 ID=EsuBft741_6|Name=EsuBft741_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MARRDVLCEIQSVLDALRRNARFEITEHRSAAEESRLTADLKALREAVRD
WPNEDLRGLSRLELVSPFLSVVRSPETNGVLTEAALRSLQAFSRDRLIGG
FEETQQDHDEAVRARIMHVLAACLEGGAGVCLSDEVVWAVLQTCMANLDQ
MVRGCW
back to top

mRNA from alignment at Scaffold_195:753990..756692-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft741_6a-0001 ID=EsuBft741_6a-0001|Name=EsuBft741_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2703bp|location=Sequence derived from alignment at Scaffold_195:753990..756692- (Ectocarpus subulatus male Bft15b)
CAGCAGCGGCACCTGCAGGTCGTATGGCGAGACGAGATGTGCTGTGCGAG
ATTCAAAGTGTTCTGGACGCGCTTAGACGCAACGCACGGTTCGAGATCAC
AGAGGTAAGCTATGGTGCCCTAGAAGGCGGAACAAATATTCGCAAACCTT
TGAAATATCTCAATATCTCTTGTGAGTGTACACACGAGAGACATGTAAAC
TTGCTGTTGCACGCATAGGATGCGGCCCTACAGGGGGTCTGTCTGGTGCG
GGACATCGACTGCTGTAGTGTCGATTTGAAGTGTACGCACCATAGGCTGT
TGGGCATGCTCTGACCACAGCGTTCATCTTTGTTTCACCCTTGGACGGCG
TCTATAACGCTCATTACGAACATCCGACAAACCAGCATCGCTCCGCTGCG
GAGGAAAGCCGGCTGACTGCCGACTTGAAGGCCCTGCGAGAAGCTGTCCG
CGACTGGCCAAACGAGGGTGAGTGAGAGGCACGGAAAGACGCGGGGAGGG
GGCTCTGCTGAGCTGTAGATTTTCGTAACGCCGTTGTGGCATTTCGCCTT
TTGCCATTTTCGCGGAGAGAGACTGCTGTCCCACACAAGTGATGGCATGC
ATTCAAGGATAGAAAGTGTGATTTGGTGATTGTTGATTGGTGGGGCGACA
TGCTTATTTGGCCGCACCCTGAGCTATGCACTAACTATGCACATGTGCCC
GTCCTGTTCTCTGATCATGACTAGATAAATATGCTACGAAACCGACTTTG
GCGTCTCCCTAGAGACCAGCGACGCGGCATTGCCATGCCGTAGACATCAC
GTCCTCCGCGATACGTGTTGCAGTATTTAGCATTCGATGCTTCGGGAGCA
CAAAGCGCCGTACCAGGTGATCTTCTTACGCAAAGTACGTTTTGTAGTGA
AGTACATCGGCTCGCACAAGCATGCTCACGTTGAGGCCCTGGTGAACAGC
GTGCTCGGTGGATCTGTCTGTACGCACACGTCTGTACCCACACGGACGCC
GCCGCGATATATCAAGACTACGTGTTTCGTACTGCAAAGGTCAACGATTG
CCTGTGCATGCGTGGGTCCTCGGTGCAGCAGGGGCGTTTTAGCTGTAGAA
GCAACCGACGGCAGTGTGCGGGATACAGAAACGCGCGACAAGTTCGGGAG
TTGTTGGTCGAAATCAACAGAGAGCTACTTGCCTCCTCGTTTTGATACAC
ATCGTCTTCATCGCTACAGCGGCAGTACACCATTTATTTTTGTTTTTGTT
TTATTTTGATCGGTTTCCGAGGACTCTTTTCTCGAACGGTCGGTGCGGTA
CCTGTTATTTTCTTTTGATCGTCTTGTGTTCTTTTTCCGAGTGGTTTGTA
CCCTATTTTTGTTTTCTTTCCCCGCGGCGTCGTATGTGCCAGGTTTTGAG
GCCATGGGCTCCCCATTTTTTGTGGACTGTAGAGCTAATGTGAGAAACAA
CAACAACAACAAACCTTGGCGGGACACCGAAACACACCACGCCACGTTGT
AGAAGCGGCACCAAGTCCCATCCAACAAACTTGGAGGGCGCTATTTTGCA
GTAATATTTGGGCAATGGAGCCACTCCACTGACATCACGCAGCTGATGGT
ATGTGTTGCTCGTATGGAATGACACGGCTCGTTTTGCTTTGGAATGCTGC
TGGGCCAGCACACACGAAGTTGACAAGAGCAGCGGCCGCAGCAGCAGCTC
TCAGCCCCAACACCTCCCGGCCCCCGTGCTATCACTGCCCGACCTCGTGT
ATTGTCAGACCTCCGCGGCTTGAGCAGGCTGGAGTTGGTCTCCCCGTTCC
TGTCGGTTGTGCGGTCCCCTGAAACCAACGGAGTCCTTACGGAGGCTGCG
CTGAGATCGCTGCAGGCGTTTTCACGCGACCGCCTGATAGGTGGGTATCT
CTCTGGCTGTCTGTTCGTTTTTCTGGTTGTCTCTCTGGCTGTCTGTTCGT
CTCTCTTTTTGTTTCTCTCTGCCGCTCGCTCTCTCTCCCCCCCCTGTATC
TCTCCCTCTTTGTTGCCTGGCTGTCTGTTGGTCCCTCTCTCCCTGTTTCT
CTCTATGTGCGTTTTCTGTATCTCGCTCGCCTTTGTACTGACAAGTCTCT
ACGGCACTGCTGCATGCTGATATTTTCAACTCTTGTAGCATCCTCTTTAT
GTTCGGCGTACTTGCTGCACCTGGCGAGGAGTGTTGCGCGGCAGCAGGGA
TCTGATCGAAAGCCTTCTGTCCACCCATCTCAGCAGCATTACTTTTAGCG
ACAAAACCTGCCACACACACATTTTTTCGAAGCCTGAAACGGGATTTTTC
TCCCAGGCGAGGTGGCTCACGTCGCTTTTGCAAAACCCCGTAGAAAATAA
TGCCAAGCCCGCCCACCAACCTCCACGATAAGTATCGTGATACACGACGC
CTTCTCGTCCAACACCCAAGGACGGCGGGTTGTTGCGTGCTTCGCCTGGC
GTCACCTTGCCCCGCAGAGGAGGACTCGGTACACGCCTCCGAAGCCGTCG
GAGACCTCGTGGATGCGCTGATCGGGTGCAGGTTCGAGGAGACCCAGCAG
GACCATGACGAGGCGGTCCGAGCGAGAATCATGCACGTCTTGGCGGCGTG
CCTGGAGGGCGGGGCCGGGGTGTGCCTGTCGGACGAGGTGGTCTGGGCGG
TGCTGCAGACGTGCATGGCCAACCTCGACCAAATGGTGCGAGGCTGCTGG
TAG
back to top

Coding sequence (CDS) from alignment at Scaffold_195:753990..756692-

>EsuBft741_6a-0001 ID=EsuBft741_6a-0001|Name=EsuBft741_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=471bp|location=Sequence derived from alignment at Scaffold_195:753990..756692- (Ectocarpus subulatus male Bft15b)
ATGGCGAGACGAGATGTGCTGTGCGAGATTCAAAGTGTTCTGGACGCGCT
TAGACGCAACGCACGGTTCGAGATCACAGAGCATCGCTCCGCTGCGGAGG
AAAGCCGGCTGACTGCCGACTTGAAGGCCCTGCGAGAAGCTGTCCGCGAC
TGGCCAAACGAGGACCTCCGCGGCTTGAGCAGGCTGGAGTTGGTCTCCCC
GTTCCTGTCGGTTGTGCGGTCCCCTGAAACCAACGGAGTCCTTACGGAGG
CTGCGCTGAGATCGCTGCAGGCGTTTTCACGCGACCGCCTGATAGGTGGG
TTCGAGGAGACCCAGCAGGACCATGACGAGGCGGTCCGAGCGAGAATCAT
GCACGTCTTGGCGGCGTGCCTGGAGGGCGGGGCCGGGGTGTGCCTGTCGG
ACGAGGTGGTCTGGGCGGTGCTGCAGACGTGCATGGCCAACCTCGACCAA
ATGGTGCGAGGCTGCTGGTAG
back to top