EsuBft741_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft741_17a-0001
Unique NameEsuBft741_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:858417..861732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog29760.VIT_07s0005g06030.t01
ProteomeIdEsuBft741_17
Protein domainsCoil
Protein domainsIPR001584
Protein domainsIPR012337
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl35493|Streptophyta
Length1564
Hectar predicted targeting categoryother localisation
Evalue1.63e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionMitochondrial protein
COG categoryO
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft741_17aEsuBft741_17aEctocarpus subulatus male Bft15bgeneScaffold_195 858417..861732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_17a-0001EsuBft741_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 858417..861605 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_17a-0001-exonagat-exon-66299Ectocarpus subulatus male Bft15bexonScaffold_195 858417..858461 +
EsuBft741_17a-0001-exonagat-exon-66301Ectocarpus subulatus male Bft15bexonScaffold_195 858775..859428 +
EsuBft741_17a-0001-exonEsuBft741_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 859632..860185 +
EsuBft741_17a-0001-exonagat-exon-66300Ectocarpus subulatus male Bft15bexonScaffold_195 861106..861167 +
EsuBft741_17a-0001-exonagat-exon-66298Ectocarpus subulatus male Bft15bexonScaffold_195 861484..861732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_17a-0001-cdsEsuBft741_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 858417..858461 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_17a-0001-exonagat-three_prime_utr-20937Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 861606..861732 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft741_17a-0001 ID=EsuBft741_17a-0001|Name=EsuBft741_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1564bp|location=Sequence derived from alignment at Scaffold_195:858417..861732+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGTGCTGATTTTGACTTGGGAGCGGCCACGCTTGGCCCTGAACAA
GGTCTACGGTCTCCGGCGGAAGTCCGACGCGCTGGCGGCAACGAAAAGGC
TGCTGGCGGACGTGGGGCGGAACGACCTCGTGCGCATCGAGTGTTTCCGC
GTCGACAACGGCACCGAATGGACCCGCGGCGACTTCCGGCGCTTCTGCGA
CGACAACGGCATCGGCGTCGAATTTACGCCTCCTGGCGTTGCACAGTACA
ACGGCGTCGTCGAGAGCGCCATCTGGCGCATCATAAAGGCCGGCATGGCC
GCTCGCCGCAGCGCTGGCCGTGTGTTCAACGTCGAATTCGCCTCCATCCC
CGGCCTCGACGAGCGCGGTGACCGTCATTGGATGGAATCGGCGAAATGGG
CCGCCGACGCTCTCAACCAGTCAGCGACCAAGGCCAACCCCGGGCGGCGC
TCGCCGCACGAGATGTTAACCGGCGAGCAGGGGCCTTTCCGCTTGCTGCC
GTTCTTTCAGCCTGGCTTCATGCGTGAGGATCGCCGCACCAAGCTCGACG
ACCAGGCCACCCTCTGCTACTACCTGAACGGCGGCGACAACCACCCGAGC
GGCACCGTCAAGGTCCTCCAGGAGTCCACCGGCCGCGTCGCCTACACCAA
CAACGTGTCGTGGGTGACGTCGGCGCCAACCGGCGAGGGGGGATCCCTGC
CGCCCTCTGCCACTTCGCCGTCACCGTCGGCGACCCCCGCTCCTGGCAAT
CCGTCCTCTGCCTCTCCGCCGTCACCGTCGGCGACCCCAGATCCAGACCA
GCCGCCGCCGCCGCCGGACCCCGCAATGCCCCCGCCTACGGCTCACGCCA
TGCGGCAGCTTCGCCCGGGTAAAAAGGCCGAGGGTATGACAGACCCGCGG
CTGCCAAGCCGTACGAGATCGGGCACAAGGCACAGCACAGGACTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCGGGAAGACATCGACGCCACGCTGCGAGACCAGCGCCCGCCGGAGCA
ACGCCCTGACCTTCCGCATTGCCAGGCCAGCGACCTTCGTGTCCCCAAGA
GCTACAAAGAGGCCATGGCGTCGGAGCACCGGAACCTTTGGAGCGAATCT
ACGCAAAGGGAGTTTTATGACTTGTTGGAAGCGGGGACTTTTACTCCGGA
GAAGTTGACGATTTCCCAGCAGACTTTCACGGACGAGCTAGCAGCAGAGT
ATGGAGTAGTGAGAGCGATGGACACCGTGTCTTGGTTGTCCAGAACGCAG
AAGTGTGTCATGCTTTCGACGACAGAAGCAGAGTACGTCGCGCTTGGTGA
CGTAGTGAAGGAGATCTTGTTTTTGAGGCAAATTTAGCATTTCATGTTGC
CGCAGGTCGGAATGCCATGCATCCCCATCTTCGAGGACAACCAGGGGGCG
AGTCAACTAGCGCAGAACCCCATCTCAAACTCGAACTCGAAGCACATAGA
TGTAAGGCACCATT
back to top

protein sequence of EsuBft741_17a-0001

>EsuBft741_17 ID=EsuBft741_17|Name=EsuBft741_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=478bp
MGVLILTWERPRLALNKVYGLRRKSDALAATKRLLADVGRNDLVRIECFR
VDNGTEWTRGDFRRFCDDNGIGVEFTPPGVAQYNGVVESAIWRIIKAGMA
ARRSAGRVFNVEFASIPGLDERGDRHWMESAKWAADALNQSATKANPGRR
SPHEMLTGEQGPFRLLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPS
GTVKVLQESTGRVAYTNNVSWVTSAPTGEGGSLPPSATSPSPSATPAPGN
PSSASPPSPSATPDPDQPPPPPDPAMPPPTAHAMRQLRPGKKAEGMTDPR
LPSRTRSGTRHSTGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XREDIDATLRDQRPPEQRPDLPHCQASDLRVPKSYKEAMASEHRNLWSES
TQREFYDLLEAGTFTPEKLTISQQTFTDELAAEYGVVRAMDTVSWLSRTQ
KCVMLSTTEAEYVALGDVVKEILFLRQI
back to top

mRNA from alignment at Scaffold_195:858417..861732+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft741_17a-0001 ID=EsuBft741_17a-0001|Name=EsuBft741_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3316bp|location=Sequence derived from alignment at Scaffold_195:858417..861732+ (Ectocarpus subulatus male Bft15b)
ATGGGGGTGCTGATTTTGACTTGGGAGCGGCCACGCTTGGCCCTGGTGCG
TCCCCGTTTGCTCTTGGTTCGACTGAAAAGTCCGTTGACATCAACCGCTT
CCACCGCTCCCTTGCCCACGCTTGCGAGCCTCTTTGAGAGAAACTGCCTA
GCAGAGAGGCATCGTGCTCACCGGCAAGCTGGAGCCGTGCACGGACTGCA
TGAAGGCAAAGGGCAGGCGAGGGTCGGTGCCGCGGGGGCCGGGAGCGCGG
GCGTCCAAGCCACTGGGGCGTGTTCACCTGGACCTGTGTGGACCGCTGTT
GCCTTCCCTGGGCGGCAACCTCTACCTGTTCGTCGCCGTGGACAGCGCCT
CGCGGTAGAACAAGGTCTACGGTCTCCGGCGGAAGTCCGACGCGCTGGCG
GCAACGAAAAGGCTGCTGGCGGACGTGGGGCGGAACGACCTCGTGCGCAT
CGAGTGTTTCCGCGTCGACAACGGCACCGAATGGACCCGCGGCGACTTCC
GGCGCTTCTGCGACGACAACGGCATCGGCGTCGAATTTACGCCTCCTGGC
GTTGCACAGTACAACGGCGTCGTCGAGAGCGCCATCTGGCGCATCATAAA
GGCCGGCATGGCCGCTCGCCGCAGCGCTGGCCGTGTGTTCAACGTCGAAT
TCGCCTCCATCCCCGGCCTCGACGAGCGCGGTGACCGTCATTGGATGGAA
TCGGCGAAATGGGCCGCCGACGCTCTCAACCAGTCAGCGACCAAGGCCAA
CCCCGGGCGGCGCTCGCCGCACGAGATGTTAACCGGCGAGCAGGGGCCTT
TCCGCTTGCTGCCGTTCTTTCAGCCTGGCTTCATGCGTGAGGATCGCCGC
ACCAAGCTCGACGACCAGGCCACCCTCTGCTACTACCTGAACGGCGGCGA
CAACCACCCGAGCGGCACCGTCAAGGTCCTCCAGGAGTCCACCGGCCGCG
TCGCCTACACCAACAACGTGTCGTGGGTGACGTCGGCGCCAACCGGCGAG
GGGGGATCCCTGGTATCACCGCTGCGCCGACACCCCCCCCGTTCACGCCG
CTGGTCGTCTCGATCAACTTTGGCCCAGCACCGACGCCTTCGACCGCCAC
ACCGCCACCGCCAGCGCCCACGCCGTCGCCCGCTCCCGCTCCCGCTGCCT
CTTCGACCCCTGCCGCAACGCCGCCGCCAGCGACCACGCCGCCGCCCGCT
CCCACGACTTCACAGCCGCCCTCTGCCACTTCGCCGTCACCGTCGGCGAC
CCCCGCTCCTGGCAATCCGTCCTCTGCCTCTCCGCCGTCACCGTCGGCGA
CCCCAGATCCAGACCAGCCGCCGCCGCCGCCGGACCCCGCAATGCCCCCG
CCTACGGCTCACGCCATGCGGCAGCTTCGCCCGGGTAAAAAGGCCGAGGG
TATGACAGACCCGCGGCTGCCAAGCCGTACGAGATCGGGCACAAGGCACA
GCACAGGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCGGGAAGACATCGACGCCACGCTGCGAGACC
AGCGCCCGCCGGAGCAACGCCCTGACCTTCCGCATTGCCAGGCCAGCGAC
CTTCGTGTCCCCAAGAGCTACAAAGAGGCCATGGCGTCGGAGCACCGGAA
CCTTTGGAGCGAATCTACGCAAAGGGAGTTTTATGACTTGTTGGAAGCGG
GGACTTTTACTCCGGAGAAGTAGCAATTAGTGGAGAACGAAATTAACGCT
ATGTGGGTATTCGATTGGAAGGCAGATGAGTTTGGATGGCCCACTAAGGT
TAAGTCGAGACTTGTAGCGAGAGGTGATATGCAGAGAGAGTACATTGACT
TTGGAGAGTTGTACGCGCCTACCGTTTCTGTTTCATGTGTTAGGATGTTG
GCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGATATTGA
GCAAGCTTTTGTGCGTTCGGAGTTGGAGGAAGACGTGTACATGCGTTTGC
CATAGGGATGTGGAGCTCTATCTGGAATGATTGTAAAACTAGGCAATAGT
CTGTATGGCTTGAGACAGGCATCAAGGCAGTGGCATGCAATGCTGAAGAG
GTGTTTGGTGGCGTTAGGATTTGAGCAGTGCATGGCCGATGCTTGTGTGT
TTCGTTTGATTGAGGATGGATGTGTTGTTTTGATTTTGGTAGTACATGTA
GATGACATCTTTGCTGTGGGAGAGAGGGAGAGATGTGACGAGCTTGGCGC
CGACCTTAACAAGTCCGTGCCAGTGAAGAACCTGGGAGAGTTGAGATGGT
ATTCTGGGTGCTTTTACGAGAGGAATAAGGAGANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTCTTCG
GGGGTGAAGCTTTCTGATTTTGATGCGGATGAGGTGGCGACAGACGATCT
TTCCGTTTCGTGAACTAGTCGGATCTTTGATGTGGCTGGCGACTCAGACT
AGGCTAGATATTGCGAATGCAGCANAAGGAGACCGGTAGGTTGACGATTT
CCCAGCAGACTTTCACGGACGAGCTAGCAGCAGAGTATGGAGTAGTGAGA
GGTAAGAGCGTTCCCATGTCTTCGGGGGTGAAGCTTTCTGATTTTGATGC
GGATGAGGTGGCGACAGACTTTCCGTTTCGTGAGCTGGTAGGATCGTTGA
TGTGGCTGGCGACTCAGACTAGACCAGACATTGCGAATGCAGTAAGGGCA
GTAGCTAGGTATTGCGCATCTCCGAAGCTGGTACACTGGAATGCAGCGAT
GGATATTTTNCGGATCTTTGATGTGGCTGGCGACTCAGACTAGGCTAGAT
ATTGCGAATGCAGCAAGGGCAGTAGCTAGGTATTGCGCATCTTCGAAGCT
GGTACACTGGAATGCAGCGATGGACACCGTGTCTTGGTTGTCCAGAACGC
AGAAGTGTGTCATGCTTTCGACGACAGAAGCAGAGTACGTCGCGCTTGGT
GACGTAGTGAAGGAGATCTTGTTTTTGAGGCAAATTTAGCATTTCATGTT
GCCGCAGGTCGGAATGCCATGCATCCCCATCTTCGAGGACAACCAGGGGG
CGAGTCAACTAGCGCAGAACCCCATCTCAAACTCGAACTCGAAGCACATA
GATGTAAGGCACCATT
back to top

Coding sequence (CDS) from alignment at Scaffold_195:858417..861732+

>EsuBft741_17a-0001 ID=EsuBft741_17a-0001|Name=EsuBft741_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1437bp|location=Sequence derived from alignment at Scaffold_195:858417..861732+ (Ectocarpus subulatus male Bft15b)
ATGGGGGTGCTGATTTTGACTTGGGAGCGGCCACGCTTGGCCCTGAACAA
GGTCTACGGTCTCCGGCGGAAGTCCGACGCGCTGGCGGCAACGAAAAGGC
TGCTGGCGGACGTGGGGCGGAACGACCTCGTGCGCATCGAGTGTTTCCGC
GTCGACAACGGCACCGAATGGACCCGCGGCGACTTCCGGCGCTTCTGCGA
CGACAACGGCATCGGCGTCGAATTTACGCCTCCTGGCGTTGCACAGTACA
ACGGCGTCGTCGAGAGCGCCATCTGGCGCATCATAAAGGCCGGCATGGCC
GCTCGCCGCAGCGCTGGCCGTGTGTTCAACGTCGAATTCGCCTCCATCCC
CGGCCTCGACGAGCGCGGTGACCGTCATTGGATGGAATCGGCGAAATGGG
CCGCCGACGCTCTCAACCAGTCAGCGACCAAGGCCAACCCCGGGCGGCGC
TCGCCGCACGAGATGTTAACCGGCGAGCAGGGGCCTTTCCGCTTGCTGCC
GTTCTTTCAGCCTGGCTTCATGCGTGAGGATCGCCGCACCAAGCTCGACG
ACCAGGCCACCCTCTGCTACTACCTGAACGGCGGCGACAACCACCCGAGC
GGCACCGTCAAGGTCCTCCAGGAGTCCACCGGCCGCGTCGCCTACACCAA
CAACGTGTCGTGGGTGACGTCGGCGCCAACCGGCGAGGGGGGATCCCTGC
CGCCCTCTGCCACTTCGCCGTCACCGTCGGCGACCCCCGCTCCTGGCAAT
CCGTCCTCTGCCTCTCCGCCGTCACCGTCGGCGACCCCAGATCCAGACCA
GCCGCCGCCGCCGCCGGACCCCGCAATGCCCCCGCCTACGGCTCACGCCA
TGCGGCAGCTTCGCCCGGGTAAAAAGGCCGAGGGTATGACAGACCCGCGG
CTGCCAAGCCGTACGAGATCGGGCACAAGGCACAGCACAGGACTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCGGGAAGACATCGACGCCACGCTGCGAGACCAGCGCCCGCCGGAGCA
ACGCCCTGACCTTCCGCATTGCCAGGCCAGCGACCTTCGTGTCCCCAAGA
GCTACAAAGAGGCCATGGCGTCGGAGCACCGGAACCTTTGGAGCGAATCT
ACGCAAAGGGAGTTTTATGACTTGTTGGAAGCGGGGACTTTTACTCCGGA
GAAGTTGACGATTTCCCAGCAGACTTTCACGGACGAGCTAGCAGCAGAGT
ATGGAGTAGTGAGAGCGATGGACACCGTGTCTTGGTTGTCCAGAACGCAG
AAGTGTGTCATGCTTTCGACGACAGAAGCAGAGTACGTCGCGCTTGGTGA
CGTAGTGAAGGAGATCTTGTTTTTGAGGCAAATTTAG
back to top