EsuBft741_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft741_16a-0001
Unique Name	EsuBft741_16a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_195	contig	Scaffold_195:856556..858047 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft741_16
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	125
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft741_16a	EsuBft741_16a	Ectocarpus subulatus male Bft15b	gene	Scaffold_195 856556..858047 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft741_16a-0001-exon	agat-exon-66297	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 856556..857289 +
EsuBft741_16a-0001-exon	EsuBft741_16a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 857526..858047 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft741_16a-0001-cds	EsuBft741_16a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_195 856556..857289 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft741_16a-0001-exon	agat-three_prime_utr-20936	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 857734..858047 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft741_16a-0001	EsuBft741_16	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_195 856556..857733 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_195:856556..858047+
coding sequence from alignment at Scaffold_195:856556..858047+

spliced messenger RNA

>EsuBft741_16a-0001 ID=EsuBft741_16a-0001|Name=EsuBft741_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1256bp|location=Sequence derived from alignment at Scaffold_195:856556..858047+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCGAGAGGAGCAAGGGGGAGAGGCGCCAGGTGGAGCTCGCTCT
CGCCGCGTCCGGCATGGGCCGGCGTTGCGGGGGAAGTGGGGGGGCATCCG
GGGGTCAAGACGGCGGTCAGGCAGCAGCTGGCGGCCAAAATCGTGACGGA
GAGAAGAAAAATAGTGACGTGTTCAACATTGACCCCGGCGGATTTTGCCG
CTACCACCAGTCCGAGCTTCACACCAACGAGCAGCGTCGTCTCCAGCAGC
GACTGCGGCGCGCGCGTTCGAGAGAGGGCGCCGAGGAACGCCGCTCGGGC
GGCGGTAGCCAGCAAGGGGGTAGACCGCCGCCGAGGCCAGGCCGCGGTGG
CGGCCGATGGGTGAGGCTAGGAGGGCAGCAGCACCACACCGGTCATGGTG
GCGGTGTCTGGAGCCAAGCCTCACCCCCCCCGAGACCTCTTCGTGGACGT
GGGCCTGGTGGTCGTCTGGGGCGTCACCCGGGGGGTCGTGGGCCCGCGGG
ACGCCACAGCAGCGACGGGCGTGCCGAGAGAGAACGGGCAGGGGGAGGCC
CGGGGCACGCGCGTTCTGGCCGCGGAAGAGAGCAGGCGTACGTTGTGTAC
TACGCCCACGATGATGGTGGCTACTACGAAGACTATAGCGACTACGACGA
CGGCTGCTACTACGAAGACGGCCACCACGACGCTGGGTACGCCCACTACG
CCGGCGGTGGGGACAGCTACAGCTACTCCTCAGGGATAGGAGTGACGGTT
GGAGTAGAGTCTTCTGCGTCTGCTTCGTCTTTGCTGAGTGTGGAATCTAG
TGAGGGGCCGCCTGGTAGCGAGAGATGGGTAGCTGACTCAGTAGCCAGCA
ATTGTTTCACCAACAGCAGCCTACACATGTATGACCTGCAAGAGATCCCC
GCGGTAGGAAGTATATCGTTGCAGGTGATGGTCGACTGCTAGACGTGCAA
GCCATCGGTAGTATTTATGTTAGATCCTTTCAGGAGGATGAGAATGCTGA
AACAACGACGATGTTTGTGAAGCTCACTGACGTTTCTGTTGTCGAGAGCC
TGAGTTTCAACTTGTTCTCAACGCATGCTGTTTCTTTGAAGCAACCAATC
CTCTACGACGAACATGGTGCAACCCTACAAAATGGACTGCTCTTTGCTAG
AGAGGAAAAAGCGTCTGCAGCGTATGCCATGCGGTTGCCGTACGACCCAT
CTGCGACTATTGTAGACCCTGCTGCTTTGCCCGCATTCGTGACTGCCCCC
GATTCC

protein sequence of EsuBft741_16a-0001

>EsuBft741_16 ID=EsuBft741_16|Name=EsuBft741_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=313bp
MERERSKGERRQVELALAASGMGRRCGGSGGASGGQDGGQAAAGGQNRDG
EKKNSDVFNIDPGGFCRYHQSELHTNEQRRLQQRLRRARSREGAEERRSG
GGSQQGGRPPPRPGRGGGRWVRLGGQQHHTGHGGGVWSQASPPPRPLRGR
GPGGRLGRHPGGRGPAGRHSSDGRAERERAGGGPGHARSGRGREQAYVVY
YAHDDGGYYEDYSDYDDGCYYEDGHHDAGYAHYAGGGDSYSYSSGIGVTV
GVESSASASSLLSVESSEGPPGSERWVADSVASNCFTNSSLHMYDLQEIP
AVGSISLQVMVDC

mRNA from alignment at Scaffold_195:856556..858047+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft741_16a-0001 ID=EsuBft741_16a-0001|Name=EsuBft741_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1492bp|location=Sequence derived from alignment at Scaffold_195:856556..858047+ (Ectocarpus subulatus male Bft15b)
ATGGAGCGCGAGAGGAGCAAGGGGGAGAGGCGCCAGGTGGAGCTCGCTCT
CGCCGCGTCCGGCATGGGCCGGCGTTGCGGGGGAAGTGGGGGGGCATCCG
GGGGTCAAGACGGCGGTCAGGCAGCAGCTGGCGGCCAAAATCGTGACGGA
GAGAAGAAAAATAGTGACGTGTTCAACATTGACCCCGGCGGATTTTGCCG
CTACCACCAGTCCGAGCTTCACACCAACGAGCAGCGTCGTCTCCAGCAGC
GACTGCGGCGCGCGCGTTCGAGAGAGGGCGCCGAGGAACGCCGCTCGGGC
GGCGGTAGCCAGCAAGGGGGTAGACCGCCGCCGAGGCCAGGCCGCGGTGG
CGGCCGATGGGTGAGGCTAGGAGGGCAGCAGCACCACACCGGTCATGGTG
GCGGTGTCTGGAGCCAAGCCTCACCCCCCCCGAGACCTCTTCGTGGACGT
GGGCCTGGTGGTCGTCTGGGGCGTCACCCGGGGGGTCGTGGGCCCGCGGG
ACGCCACAGCAGCGACGGGCGTGCCGAGAGAGAACGGGCAGGGGGAGGCC
CGGGGCACGCGCGTTCTGGCCGCGGAAGAGAGCAGGCGTACGTTGTGTAC
TACGCCCACGATGATGGTGGCTACTACGAAGACTATAGCGACTACGACGA
CGGCTGCTACTACGAAGACGGCCACCACGACGCTGGGTACGCCCACTACG
CCGGCGGTGGGGACAGCTACAGCTACTCCTCAGGGTACGAAGACAGCCGT
TCATCTGACGGCTGCATCCACTACGTGTACTACCCTCCTGCCGGCGAAGA
TTCATCACCGAGCAGCAACATCAGCCCCCCCCCGCGAGCAGCAGCACCAC
CGCTTTCTCCTCGTCCTCTACTCCTTCTCCTGGCGTGCCTCCATCTTCGG
GCTACATCCACCTCTGCACGGCACAATCGGTGCCCATAGGCAAGTCTCAC
CCTGAAGATTTTTTCAGTAGGATAGGAGTGACGGTTGGAGTAGAGTCTTC
TGCGTCTGCTTCGTCTTTGCTGAGTGTGGAATCTAGTGAGGGGCCGCCTG
GTAGCGAGAGATGGGTAGCTGACTCAGTAGCCAGCAATTGTTTCACCAAC
AGCAGCCTACACATGTATGACCTGCAAGAGATCCCCGCGGTAGGAAGTAT
ATCGTTGCAGGTGATGGTCGACTGCTAGACGTGCAAGCCATCGGTAGTAT
TTATGTTAGATCCTTTCAGGAGGATGAGAATGCTGAAACAACGACGATGT
TTGTGAAGCTCACTGACGTTTCTGTTGTCGAGAGCCTGAGTTTCAACTTG
TTCTCAACGCATGCTGTTTCTTTGAAGCAACCAATCCTCTACGACGAACA
TGGTGCAACCCTACAAAATGGACTGCTCTTTGCTAGAGAGGAAAAAGCGT
CTGCAGCGTATGCCATGCGGTTGCCGTACGACCCATCTGCGACTATTGTA
GACCCTGCTGCTTTGCCCGCATTCGTGACTGCCCCCGATTCC

Coding sequence (CDS) from alignment at Scaffold_195:856556..858047+

>EsuBft741_16a-0001 ID=EsuBft741_16a-0001|Name=EsuBft741_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=942bp|location=Sequence derived from alignment at Scaffold_195:856556..858047+ (Ectocarpus subulatus male Bft15b)
ATGGAGCGCGAGAGGAGCAAGGGGGAGAGGCGCCAGGTGGAGCTCGCTCT
CGCCGCGTCCGGCATGGGCCGGCGTTGCGGGGGAAGTGGGGGGGCATCCG
GGGGTCAAGACGGCGGTCAGGCAGCAGCTGGCGGCCAAAATCGTGACGGA
GAGAAGAAAAATAGTGACGTGTTCAACATTGACCCCGGCGGATTTTGCCG
CTACCACCAGTCCGAGCTTCACACCAACGAGCAGCGTCGTCTCCAGCAGC
GACTGCGGCGCGCGCGTTCGAGAGAGGGCGCCGAGGAACGCCGCTCGGGC
GGCGGTAGCCAGCAAGGGGGTAGACCGCCGCCGAGGCCAGGCCGCGGTGG
CGGCCGATGGGTGAGGCTAGGAGGGCAGCAGCACCACACCGGTCATGGTG
GCGGTGTCTGGAGCCAAGCCTCACCCCCCCCGAGACCTCTTCGTGGACGT
GGGCCTGGTGGTCGTCTGGGGCGTCACCCGGGGGGTCGTGGGCCCGCGGG
ACGCCACAGCAGCGACGGGCGTGCCGAGAGAGAACGGGCAGGGGGAGGCC
CGGGGCACGCGCGTTCTGGCCGCGGAAGAGAGCAGGCGTACGTTGTGTAC
TACGCCCACGATGATGGTGGCTACTACGAAGACTATAGCGACTACGACGA
CGGCTGCTACTACGAAGACGGCCACCACGACGCTGGGTACGCCCACTACG
CCGGCGGTGGGGACAGCTACAGCTACTCCTCAGGGATAGGAGTGACGGTT
GGAGTAGAGTCTTCTGCGTCTGCTTCGTCTTTGCTGAGTGTGGAATCTAG
TGAGGGGCCGCCTGGTAGCGAGAGATGGGTAGCTGACTCAGTAGCCAGCA
ATTGTTTCACCAACAGCAGCCTACACATGTATGACCTGCAAGAGATCCCC
GCGGTAGGAAGTATATCGTTGCAGGTGATGGTCGACTGCTAG