EsuBft740_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft740_7a-0001
Unique NameEsuBft740_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_94contigScaffold_94:47959..50826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZ09
ProteomeIdEsuBft740_7
Protein domainsPTHR12098
Protein domainsIPR006800
Ownerapollo_admin@sb-roscoff.fr
Noteprotein pellino os:drosophila melanogaster gn:pli pe:1 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1146
Hectar predicted targeting categoryother localisation
Evalue7.38e-200
EggNOG OGsKOG3842@1|root,KOG3842@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePELI2
KEGG koko:K11964
GOsGO:0000209,GO:0001817,GO:0001818,GO:0001819,GO:0001932,GO:0001934,GO:0001959,GO:0001960,GO:0002237,GO:0002376,GO:0002682,GO:0002683,GO:0002684,GO:0002694,GO:0002695,GO:0002696,GO:0002759,GO:0002831,GO:0002832,GO:0002920,GO:0002921,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007162,GO:0007165,GO:0007166,GO:0008063,GO:0008150,GO:0008152,GO:0008284,GO:0008285,GO:0008348,GO:0008592,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010648,GO:0010803,GO:0010804,GO:0010941,GO:0014070,GO:0016020,GO:0016301,GO:0016310,GO:0016567,GO:0016740,GO:0016772,GO:0016773,GO:0019207,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019787,GO:0022407,GO:0022408,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030155,GO:0030234,GO:0030888,GO:0030890,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031347,GO:0031349,GO:0031396,GO:0031397,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0032088,GO:0032101,GO:0032102,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032479,GO:0032480,GO:0032496,GO:0032944,GO:0032945,GO:0032946,GO:0033993,GO:0034097,GO:0034121,GO:0034123,GO:0034139,GO:0034141,GO:0034143,GO:0034145,GO:0034450,GO:0036211,GO:0042127,GO:0042129,GO:0042130,GO:0042221,GO:0042325,GO:0042327,GO:0042742,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043122,GO:0043123,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043331,GO:0043408,GO:0043410,GO:0043412,GO:0043433,GO:0043900,GO:0043901,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0045751,GO:0045937,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050670,GO:0050671,GO:0050672,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050829,GO:0050863,GO:0050864,GO:0050865,GO:0050866,GO:0050867,GO:0050868,GO:0050871,GO:0050896,GO:0051090,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051250,GO:0051251,GO:0051252,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060548,GO:0060759,GO:0060761,GO:0061630,GO:0061659,GO:0061945,GO:0065007,GO:0065009,GO:0070424,GO:0070426,GO:0070428,GO:0070432,GO:0070434,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070663,GO:0070664,GO:0070665,GO:0070887,GO:0070936,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071944,GO:0080090,GO:0080134,GO:0098542,GO:0098772,GO:0140096,GO:1901564,GO:1901698,GO:1901700,GO:1902524,GO:1902531,GO:1902533,GO:1902914,GO:1902916,GO:1903037,GO:1903038,GO:1903320,GO:1903321,GO:1903322,GO:1903506,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EC2.3.2.27
DescriptionToll signaling pathway
COG categoryS
BRITEko00000,ko01000,ko04121
Cross References
External references for this mRNA
DatabaseAccession
GO0009967
GO0002224
GO0031323
GO0048523
GO0008063
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft740_7aEsuBft740_7aEctocarpus subulatus male Bft15bgeneScaffold_94 47959..50826 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft740_7a-0001-exonEsuBft740_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_94 47959..48297 -
EsuBft740_7a-0001-exonagat-exon-32009Ectocarpus subulatus male Bft15bexonScaffold_94 49852..49969 -
EsuBft740_7a-0001-exonagat-exon-32010Ectocarpus subulatus male Bft15bexonScaffold_94 50138..50826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft740_7a-0001-cdsEsuBft740_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_94 47959..48297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft740_7a-0001EsuBft740_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_94 47959..50826 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft740_7a-0001 ID=EsuBft740_7a-0001|Name=EsuBft740_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1146bp|location=Sequence derived from alignment at Scaffold_94:47959..50826- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGTCCTAGTCACAACACCCGCTCGAAGGAAACCCTAGTCAAACA
TGCCGACGGAAGTGAACACGACGACGACGGTGGTGGTGTCAGGTCAACGA
AGAAGCAACCGTGCGGCCGCTGCGGGAAGCAGGTGGCGTTCAAGACACCG
GAGGCGCGACCGACGGAGTCCTGCGGCGGGAGGAATCCGCCCCACAGAGC
GCGCGGTGGGGAGGGTGGGATCGGCGGCACGAACACTAGATTGCCAAGGA
ACTACGGTGTGGGCGGCGGCGCTGGTGACGGTAACGGCCAATATCGGGAA
GGGAGAAGTTTCTTGCTGAGGAGCGCGCAGGGGGAGAGCCAAAACCACGC
CGCCGGCTATCGGCTACAGCTGTCGCTTTCCGCGCAGCAAAGGGAAGCAG
CCGAACGCGCTGGGAGAGGGCGCGCGTCAACTACGGAGGCTCCGATGGAC
ACGCTGGGGGGAGCGGAGGATGTGGTGGATGTTCCATGCCAGGCGGACGA
TGGCTGCGACATGTTTCAGCTCGGGAGGATGCAGAGTGTCGAGAACGACT
TCGCGGTGAGGGGGCCGCTGCACCAGTCTAAACCCGGCGGGAAGGTGTGC
GGGCCGGTAAGTCGGTACGCCGTGCGGCTTCTGGTCGACAGGACTCCCCC
GCACCGGTGCAGGATATTTACCGCGGGCTTCAACTCGAGGAAATGCTTGA
CCCTTCCCGAGTCGTCGCCGAAGTGGCTGGAGGACAACGGGGAGTGGGAC
GCCGTCACACCGTTTGGGATCCGCATTCTCAAGCCGGAGATAGGCGAGTG
GCGCGAGATGTTGTACGAGTCTGCAGAACAAATGGCAAGGTTAGGGGGAG
TGCAACCCTCCCAGGTTATCGAACTCCTGAACCGTCGTAAACCGCAGTGC
CCAGTCCAGCTCCAAACGTTGCAGTTCAAGCCGTGGCAACCACCGCCCAC
TACATCATCGACGTCATCTGAGGCTGGCGGTGCTAGCGGTGATGCTGCAG
TTTCTATGGTCGCCACGACCACTGCTGCTGATGGCGCGGTTGGCGCGGAA
GACGTCGGCGAAACAAACGATGCCCAGGGAGTCGACGGAGACACCGAGGT
GAAGAGGGGCGCGGCAGACCGTAGACTGAATGAAGATATTATGTGA
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protein sequence of EsuBft740_7a-0001

>EsuBft740_7 ID=EsuBft740_7|Name=EsuBft740_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=381bp
MASPSHNTRSKETLVKHADGSEHDDDGGGVRSTKKQPCGRCGKQVAFKTP
EARPTESCGGRNPPHRARGGEGGIGGTNTRLPRNYGVGGGAGDGNGQYRE
GRSFLLRSAQGESQNHAAGYRLQLSLSAQQREAAERAGRGRASTTEAPMD
TLGGAEDVVDVPCQADDGCDMFQLGRMQSVENDFAVRGPLHQSKPGGKVC
GPVSRYAVRLLVDRTPPHRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWD
AVTPFGIRILKPEIGEWREMLYESAEQMARLGGVQPSQVIELLNRRKPQC
PVQLQTLQFKPWQPPPTTSSTSSEAGGASGDAAVSMVATTTAADGAVGAE
DVGETNDAQGVDGDTEVKRGAADRRLNEDIM
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mRNA from alignment at Scaffold_94:47959..50826-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft740_7a-0001 ID=EsuBft740_7a-0001|Name=EsuBft740_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2868bp|location=Sequence derived from alignment at Scaffold_94:47959..50826- (Ectocarpus subulatus male Bft15b)
ATGGCGAGTCCTAGTCACAACACCCGCTCGAAGGAAACCCTAGTCAAACA
TGCCGACGGAAGTGAACACGACGACGACGGTGGTGGTGTCAGGTCAACGA
AGAAGCAACCGTGCGGCCGCTGCGGGAAGCAGGTGGCGTTCAAGACACCG
GAGGCGCGACCGACGGAGTCCTGCGGCGGGAGGAATCCGCCCCACAGAGC
GCGCGGTGGGGAGGGTGGGATCGGCGGCACGAACACTAGATTGCCAAGGA
ACTACGGTGTGGGCGGCGGCGCTGGTGACGGTAACGGCCAATATCGGGAA
GGGAGAAGTTTCTTGCTGAGGAGCGCGCAGGGGGAGAGCCAAAACCACGC
CGCCGGCTATCGGCTACAGCTGTCGCTTTCCGCGCAGCAAAGGGAAGCAG
CCGAACGCGCTGGGAGAGGGCGCGCGTCAACTACGGAGGCTCCGATGGAC
ACGCTGGGGGGAGCGGAGGATGTGGTGGATGTTCCATGCCAGGCGGACGA
TGGCTGCGACATGTTTCAGCTCGGGAGGATGCAGAGTGTCGAGAACGACT
TCGCGGTGAGGGGGCCGCTGCACCAGTCTAAACCCGGCGGGAAGGTGTGC
GGGCCGGTAAGTCGGTACGCCGTGCGGCTTCTGGTCGACAGGACTCCCCC
GCACCGGTGCAGGATATTTACCGCGGGCTTCAACTCGAGGTATGGTTCAC
GAAGCGAGCGTGTGGAAGCGATATGCAACGGAGACATATGGAGATGTGGA
CAGCATGAACTGCTGCCCAGCGTGTCGCTTGGCACATACCGTAGAGCAGT
AGGGTCTAGGTTAGCTCACTCTAGCGCACACACCGTCCCCTCTTTCGAAC
GATACAGGAAATGCTTGACCCTTCCCGAGTCGTCGCCGAAGTGGCTGGAG
GACAACGGGGAGTGGGACGCCGTCACACCGTTTGGGATCCGCATTCTCAA
GCCGGAGATAGGCGAGTGGCGCGAGGTAAGCGAGTGGAAGGAAGGAGGTT
CTGTCCTTAGGGGTGGGATTTCACGGGGAATTTCTTGCCGCCCGAGATAT
CTTCGACGTTTTTGTAGTTTCCAGGAAGTCGGCAACGAAACATCCACAAT
ATTACATGCTTGCTCGTTTGCGAGAGTCGCGCGTGCTGTTCCAACTGTCG
CAGCCCTCCACTTATAGCATGGTCCCGTCCTACGAAAGGCACAAAAGAGG
GGCACAGAGCACAAGCGTGTCTCTACATAGCACTGTCCTTGGGCTTGACC
AGAACACCGAAAGAAGAGATGAATTAATACAACTGAAAAAACAAAAGGCA
GGCGAGAATGGAATGGACAAAGAGGTGAAACGAAACGAAAGACGGTACAG
GACAACCGAGACAAAGCGAAGGACTGCCAGATAAAAACAAGCGGAAAATT
GTTGTGGCAGTATTCAATATCGCTCGGAAAAGGTCGAAGACAAATGACAC
AAATCGACGCAGACAGACATCAATTTTTGGTCGATTACGATTGAACGCTT
TCGTACCACCCACTTGTCTATGGCTCTCCAGGTCGTCTTCGCGATTTCGC
GTTACCAACCTTGAGTATTTTGAGGCAGAAGTTGGCAATCCATGGAGATC
TATCCCTAAGTACAATGCACCAAGCCACGATCGACGAGACATGTTGTTAG
CCTCCGGGAGTCCGACGACCTCGTCACAAGGACGATGGGAGGTATTTTGC
TGCAGTTTCTCCTTACTTCCAAATATTTTCTTCGGTCCCACAGAACAACA
AAATCCCGTGCACCGTTGTCGTCACAACCCACGCCGTCGCCTTCGTCGAC
CTGTTCGAACCAAGGTGACCGTGGTGGGCGCGATGCGCCGGTTGCGCGCG
GCTGGCCGCCTAGACACAATCGGCGACCTCGTTCCCGGCGAAACTAACGA
ACTCACTTCGGGGACAATTATCGATATCGGCGGTGTACAGGTGAAGCTGA
CTGAGGCGTGCTGTCTAGCGAGAGGGGGAGTGGGTAGGTGGGGCTACAGC
TAGCTACGCCTTTCTGTACCTTCTTCCCGTTGAAGAATCGTGACGCCGGT
GGAGCGTGTCGGGCATGGAATCTTGAGCCTGACAACGAAAATCGAAGTTA
ATTGTCGGGAGGGGTAGTCTCGGACTATTTTAGACTCGAAAGAACCTTTC
GATCACGGAACATCGTCAGCACAGCAGAACCGGGGAGAAAAGAGTGAGTG
TCTCGGGTCTGTGTGCGGTAGGTACGAGCAGGTTGCAGAACGTGTACAGA
AGAAGCAGGCCTTCACATCCCGAAAAGTGATGCACCGTGAATATCGGAGC
TAAGTGTGGCCAGGAGCATCAGCATGCCGTTGTTTTCTGTGTTTTGCATG
CTGAGAAATCACGAGACTTGGAATGGGTGTGTCACCAGTCACCTACTCTC
GTTGTTGCGTCATGACCGACTTGTGTTCATGCTTCTCTTTCGCCCTCTGC
GGTGCGTCTATGTTGATCGCCTTCTTCATCTCAACGTATCGTGTCGTAAC
CTTCTTACTTGTTTCTTTGCCTCCGACAGATGTTGTACGAGTCTGCAGAA
CAAATGGCAAGGTTAGGGGGAGTGCAACCCTCCCAGGTTATCGAACTCCT
GAACCGTCGTAAACCGCAGTGCCCAGTCCAGCTCCAAACGTTGCAGTTCA
AGCCGTGGCAACCACCGCCCACTACATCATCGACGTCATCTGAGGCTGGC
GGTGCTAGCGGTGATGCTGCAGTTTCTATGGTCGCCACGACCACTGCTGC
TGATGGCGCGGTTGGCGCGGAAGACGTCGGCGAAACAAACGATGCCCAGG
GAGTCGACGGAGACACCGAGGTGAAGAGGGGCGCGGCAGACCGTAGACTG
AATGAAGATATTATGTGA
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Coding sequence (CDS) from alignment at Scaffold_94:47959..50826-

>EsuBft740_7a-0001 ID=EsuBft740_7a-0001|Name=EsuBft740_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1146bp|location=Sequence derived from alignment at Scaffold_94:47959..50826- (Ectocarpus subulatus male Bft15b)
ATGGCGAGTCCTAGTCACAACACCCGCTCGAAGGAAACCCTAGTCAAACA
TGCCGACGGAAGTGAACACGACGACGACGGTGGTGGTGTCAGGTCAACGA
AGAAGCAACCGTGCGGCCGCTGCGGGAAGCAGGTGGCGTTCAAGACACCG
GAGGCGCGACCGACGGAGTCCTGCGGCGGGAGGAATCCGCCCCACAGAGC
GCGCGGTGGGGAGGGTGGGATCGGCGGCACGAACACTAGATTGCCAAGGA
ACTACGGTGTGGGCGGCGGCGCTGGTGACGGTAACGGCCAATATCGGGAA
GGGAGAAGTTTCTTGCTGAGGAGCGCGCAGGGGGAGAGCCAAAACCACGC
CGCCGGCTATCGGCTACAGCTGTCGCTTTCCGCGCAGCAAAGGGAAGCAG
CCGAACGCGCTGGGAGAGGGCGCGCGTCAACTACGGAGGCTCCGATGGAC
ACGCTGGGGGGAGCGGAGGATGTGGTGGATGTTCCATGCCAGGCGGACGA
TGGCTGCGACATGTTTCAGCTCGGGAGGATGCAGAGTGTCGAGAACGACT
TCGCGGTGAGGGGGCCGCTGCACCAGTCTAAACCCGGCGGGAAGGTGTGC
GGGCCGGTAAGTCGGTACGCCGTGCGGCTTCTGGTCGACAGGACTCCCCC
GCACCGGTGCAGGATATTTACCGCGGGCTTCAACTCGAGGAAATGCTTGA
CCCTTCCCGAGTCGTCGCCGAAGTGGCTGGAGGACAACGGGGAGTGGGAC
GCCGTCACACCGTTTGGGATCCGCATTCTCAAGCCGGAGATAGGCGAGTG
GCGCGAGATGTTGTACGAGTCTGCAGAACAAATGGCAAGGTTAGGGGGAG
TGCAACCCTCCCAGGTTATCGAACTCCTGAACCGTCGTAAACCGCAGTGC
CCAGTCCAGCTCCAAACGTTGCAGTTCAAGCCGTGGCAACCACCGCCCAC
TACATCATCGACGTCATCTGAGGCTGGCGGTGCTAGCGGTGATGCTGCAG
TTTCTATGGTCGCCACGACCACTGCTGCTGATGGCGCGGTTGGCGCGGAA
GACGTCGGCGAAACAAACGATGCCCAGGGAGTCGACGGAGACACCGAGGT
GAAGAGGGGCGCGGCAGACCGTAGACTGAATGAAGATATTATGTGA
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