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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 44056.XP_009040277.1 |
| ProteomeId | EsuBft740_5 |
| Protein domains | PTHR12442 |
| Protein domains | IPR001680 |
| Protein domains | IPR017986 |
| Protein domains | IPR015943 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | 78 kda intermediate flagellar outer arm os:chlamydomonas reinhardtii gn:oda9 pe:1 sv:3 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 91 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.78e-169 |
| EggNOG OGs | COG0664@1|root,KOG0608@1|root,KOG0616@1|root,KOG1587@1|root,KOG0608@2759|Eukaryota,KOG0616@2759|Eukaryota,KOG1113@2759|Eukaryota,KOG1587@2759|Eukaryota |
| Ec32 ortholog description | putative, Dynein intermediate chain |
| Ec32 ortholog | Ec-06_002030.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | LATS1 |
| KEGG ko | ko:K04345,ko:K04739,ko:K08791,ko:K10409,ko:K11143,ko:K19477 |
| KEGG Pathway | ko01522,ko04010,ko04014,ko04020,ko04022,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04211,ko04213,ko04214,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04390,ko04391,ko04392,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04970,ko04971,ko04976,ko05012,ko05016,ko05020,ko05030,ko05031,ko05032,ko05110,ko05146,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05414,map01522,map04010,map04014,map04020,map04022,map04024,map04062,map04113,map04114,map04138,map04140,map04211,map04213,map04214,map04261,map04270,map04310,map04340,map04341,map04371,map04390,map04391,map04392,map04530,map04540,map04611,map04713,map04714,map04720,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04970,map04971,map04976,map05012,map05016,map05020,map05030,map05031,map05032,map05110,map05146,map05165,map05166,map05169,map05200,map05203,map05205,map05414 |
| KEGG Module | M00683,M00695 |
| GOs | GO:0000003,GO:0000079,GO:0000082,GO:0000086,GO:0000166,GO:0000226,GO:0000278,GO:0000287,GO:0000819,GO:0000902,GO:0000904,GO:0000922,GO:0001221,GO:0001223,GO:0001224,GO:0001225,GO:0001578,GO:0001654,GO:0001667,GO:0001701,GO:0001708,GO:0001745,GO:0001751,GO:0001752,GO:0001754,GO:0001824,GO:0001825,GO:0001826,GO:0001827,GO:0001828,GO:0001932,GO:0001933,GO:0001934,GO:0002064,GO:0002065,GO:0002066,GO:0002119,GO:0002164,GO:0003006,GO:0003008,GO:0003341,GO:0003351,GO:0003674,GO:0003774,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005858,GO:0005875,GO:0005886,GO:0005911,GO:0005912,GO:0005929,GO:0005930,GO:0005938,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007444,GO:0007446,GO:0007460,GO:0007507,GO:0007568,GO:0007588,GO:0007600,GO:0007605,GO:0008064,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008285,GO:0008286,GO:0008340,GO:0008360,GO:0008361,GO:0008544,GO:0008630,GO:0009314,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009886,GO:0009887,GO:0009888,GO:0009892,GO:0009893,GO:0009894,GO:0009913,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010212,GO:0010243,GO:0010259,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010631,GO:0010646,GO:0010648,GO:0010721,GO:0010769,GO:0010941,GO:0010942,GO:0010975,GO:0012501,GO:0014013,GO:0014014,GO:0015630,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016324,GO:0016462,GO:0016477,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018105,GO:0018193,GO:0018209,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030031,GO:0030054,GO:0030111,GO:0030154,GO:0030162,GO:0030178,GO:0030182,GO:0030216,GO:0030286,GO:0030317,GO:0030331,GO:0030421,GO:0030554,GO:0030707,GO:0030832,GO:0030833,GO:0030855,GO:0030879,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031344,GO:0031399,GO:0031400,GO:0031401,GO:0032268,GO:0032269,GO:0032270,GO:0032271,GO:0032386,GO:0032387,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032838,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033143,GO:0033146,GO:0033157,GO:0033554,GO:0033673,GO:0034613,GO:0034622,GO:0035082,GO:0035239,GO:0035257,GO:0035258,GO:0035265,GO:0035295,GO:0035329,GO:0035556,GO:0035639,GO:0036094,GO:0036157,GO:0036158,GO:0036211,GO:0040007,GO:0040008,GO:0040011,GO:0042127,GO:0042176,GO:0042221,GO:0042306,GO:0042308,GO:0042325,GO:0042326,GO:0042327,GO:0042706,GO:0042771,GO:0042981,GO:0042995,GO:0043009,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043412,GO:0043434,GO:0043549,GO:0043588,GO:0043704,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044448,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044843,GO:0045165,GO:0045176,GO:0045177,GO:0045179,GO:0045185,GO:0045464,GO:0045465,GO:0045503,GO:0045504,GO:0045570,GO:0045595,GO:0045596,GO:0045664,GO:0045736,GO:0045786,GO:0045793,GO:0045859,GO:0045926,GO:0045936,GO:0045937,GO:0046530,GO:0046552,GO:0046620,GO:0046621,GO:0046822,GO:0046823,GO:0046872,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048546,GO:0048565,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048589,GO:0048592,GO:0048598,GO:0048609,GO:0048621,GO:0048638,GO:0048640,GO:0048646,GO:0048663,GO:0048665,GO:0048699,GO:0048731,GO:0048732,GO:0048749,GO:0048814,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051049,GO:0051051,GO:0051093,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051220,GO:0051223,GO:0051224,GO:0051235,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051276,GO:0051338,GO:0051348,GO:0051427,GO:0051493,GO:0051641,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0055123,GO:0060251,GO:0060253,GO:0060255,GO:0060271,GO:0060284,GO:0060341,GO:0060429,GO:0060465,GO:0060644,GO:0060828,GO:0061062,GO:0061064,GO:0061065,GO:0061067,GO:0061180,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070161,GO:0070201,GO:0070286,GO:0070727,GO:0070887,GO:0070925,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0071944,GO:0072089,GO:0072331,GO:0072332,GO:0072359,GO:0080090,GO:0090066,GO:0090087,GO:0090090,GO:0090130,GO:0090132,GO:0090317,GO:0090596,GO:0097014,GO:0097159,GO:0097190,GO:0097193,GO:0097367,GO:0097722,GO:0098590,GO:0098813,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902903,GO:1903047,GO:1903050,GO:1903362,GO:1903827,GO:1903828,GO:1904029,GO:1904030,GO:1904589,GO:1904590,GO:1904950,GO:2000026,GO:2000058 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| EC | 2.7.11.1,2.7.11.11,2.7.11.12 |
| Description | dynein heavy chain binding |
| COG category | S |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036,ko04812 |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0031227 |
| GO | 0048869 |
| GO | 0005737 |
| GO | 0048856 |
| GO | 0030030 |
| GO | 0030286 |
| GO | 0005929 |
| GO | 0005794 |
| GO | 0003351 |
| GO | 0003774 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft740_5a-0001 ID=EsuBft740_5a-0001|Name=EsuBft740_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=918bp|location=Sequence derived from alignment at Scaffold_94:37208..39766+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTTCGAACGCCACGCAGAGGCCGCCGATGATGGGGCGGGCGGAGGGGG CCGGAACGAGGACGACATGGTTCACAGCGCCAAGATGGGAGGTGCCCTCA AGATTCTGGAGCGGATGGTAAACCAGAACGCGGAGGACGAGATCTTCCAA GACTTCAAGTACTGGGAGGACGCATCGGATCATTTCCGTGAGGGCGAGGG ATCTTTGCTCCCCCTGTGGCGCTTCAGCACGGACAGGACCAAGAGGAAGC AGGTGACGGCCCTAGCGTGGAACCCGCAGTACCCTGATCTGTTCGCGGCA GCCTACGGCAGCTACGACTTCATGCGCCAGGGCAGCGGGATGGTGTGTTG CTTCAGCTTGAAAAACACCAGCCACCCGGAGTACACCTTCGGCACCGAGA GCGGGGTTATGTGCCTCGACTTCCACCCGGTGCACAACTCCTTGCTGGCG GTTGGCTGCCACGACGGCACCGTCATGGTTTTCGACGTCAGACACAAAGC GAACCGCCCCATCTACTCCTCTAGCATCAAGACGGGCAAGCACACGGACC CCGTGTGGCAGGTGTATTGGCAAAGTGACGACCAGCCCAAGGAGCTGAAC TTTTTCAGCATTTCCTCCGACGGCCGGGTGGCCAGTTGGGTCATGTCCAA GAACGAGCTTAAAATGGAGCCGGTCATGCAGCTCAAACTCGTCAACACTA TCAAGGACGACCCGGAGGAGACCTCTCTCTCCGGGCTGGCTGGGGGCTGC TGCTTCGACTTCAACCGGCACAGCGAGCACCTCTTCCTCGTGGGCACCGA GGAAGGGAAGATCCACAAGTGCTCAAAGGCGTACAGCGGGCAGTATCTCG AGACGTACGAGGGGCACAACATGGCCGTCTACACGCTCAGGTTCGCAGAA AGGAGGGGAGAAGGATAG back to topprotein sequence of EsuBft740_5a-0001 >EsuBft740_5 ID=EsuBft740_5|Name=EsuBft740_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=305bp
MFERHAEAADDGAGGGGRNEDDMVHSAKMGGALKILERMVNQNAEDEIFQ DFKYWEDASDHFREGEGSLLPLWRFSTDRTKRKQVTALAWNPQYPDLFAA AYGSYDFMRQGSGMVCCFSLKNTSHPEYTFGTESGVMCLDFHPVHNSLLA VGCHDGTVMVFDVRHKANRPIYSSSIKTGKHTDPVWQVYWQSDDQPKELN FFSISSDGRVASWVMSKNELKMEPVMQLKLVNTIKDDPEETSLSGLAGGC CFDFNRHSEHLFLVGTEEGKIHKCSKAYSGQYLETYEGHNMAVYTLRFAE RRGEG back to topmRNA from alignment at Scaffold_94:37208..39766+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft740_5a-0001 ID=EsuBft740_5a-0001|Name=EsuBft740_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2559bp|location=Sequence derived from alignment at Scaffold_94:37208..39766+ (Ectocarpus subulatus male Bft15b) ATGTTCGAACGCCACGCAGAGGCCGCCGATGATGGGGCGGGCGGAGGGGG
CCGGAACGAGGACGACATGGTTCACAGCGCCAAGATGGGAGGTGCCCTCA
AGATTCTGGAGCGGATGGTAAACCAGAACGCGGAGGACGAGATCTTCCAA
GACTTCAAGTACTGGGAGGTGAGACCATCTAGCCCTTCCATTGCTTTCAC
CGGGTTTGCGAACGTACTTAGTGATAGGTTTTGCAATGTCGTACTCTGCC
TGGGTCTGGGTCTTCAGTTTCGACCACGAGACGTTCTCTCCGACCCAATT
ACCCAGCAGATTGCAAGCCTTCATGTTGAACGGTCGCGGTCGCTCCTGAC
GATCTTTTCCCCGCTACGTAGAGGCACGAGCATCAATCTCTTTGATATGC
CATGTCGTTCCTCGGCAGAAGGCAAGTCATTGTTGCCAACGCGTTGGTTC
GATCGGCCCTAACACGCCGCTGTTTAGGACGCATCGGATCATTTCCGTGA
GGGCGAGGGATCTTTGCTCCCCCTGTGGCGCTTCAGCACGGACAGGACCA
AGAGGAAGCAGGTACGTTGCGGTGGCGCGAAGCCTTCGCGGTAGCCTGAG
TGAGTCGAAGCAATGAATCAGTTTTGCGGCCACGCAGCCGTTTGCTAGGC
GTTGAACGGCCCCGACCACACAAATGCCCCCGCACGAAGTTTGCTAAGTT
TTGGCCGAAGGCGTGGTGCGGTGAGACTTCCTGTCTGTGAACGTCATGTT
GCATGCTACGTGGTCTCCGCCGAGCTATGGCACAGTCCACAAACAAAAAT
GTGCGGTCTCGTTGTGCGTTATGCATGGTATACCGCTCAGAGTAATACAT
AGTATTTGAAGGCATCCAGCTATTTCGTGCAGGGAACAATACGTGCTAGC
TGTTGGAACAGTAGCGCTCGGCCGTACATGAAAGGTGATGGTAAATGACG
TCAAAACCACCCGCTTATCACGATCATAGCTTCGTCCAAGCCTTCGATTA
CATCTGGCATCATTCGTGTGTGTTTGACGTTGTGTACGGCGGAAATGAAA
AACACTAGCCGGCCGTCGACCTTGTTCGTTTCCGCAGGTGACGGCCCTAG
CGTGGAACCCGCAGTACCCTGATCTGTTCGCGGCAGCCTACGGCAGCTAC
GACTTCATGCGCCAGGGCAGCGGGATGGTGTGTTGCTTCAGCTTGAAAAA
CACCAGCCACCCGGAGTACACCTTCGGCACCGAGAGCGGGGTGAGGGGAG
GGGCGCGCGGGGGATTTGATCTCTTTGGATGCTTCTATCTACCAAGGTGG
TGCACGGCTACCTTCTGCACGAAACGCTTTGAGTCCTCTTTATTAGTTGA
CCGTGGGCAACGGTTGCCGTGATTGAAAGCCGTTTCGTTGATCAATTCCA
GAGGTTGCGCATCTTCATGACTCCACCCGTAGATCTTGTACGTGCTCCGT
AGAACTACGACGCAAGTTATACTGGTTGTGCGACATGCGCTACAGATGGC
CCGCTACGCTCCCCATATAAACGTACTATGCCGAACTGAACTGAACGAAA
CAGGTTATGTGCCTCGACTTCCACCCGGTGCACAACTCCTTGCTGGCGGT
TGGCTGCCACGACGGCACCGTCATGGTTTTCGACGTCAGACACAAAGCGA
ACCGCCCCATCTACTCCTCTAGCATCAAGACGGGCAAGCACACGGACCCC
GTGTGGCAGGTATGGGAGGATGTGTGTTTGATTGCGCAGCCAAAGCCATG
ATGGCTCGGCTGACTACCGTTGTGAAGGTCTAAATTACCGCATTTGGCCC
ACGTGATGCGAGCTATTCGACGCTATCCCCGCGATCCAAGCACATGGCAA
TATCAGAGGTCTTACACGTGCAGCAATATATGATCGGGCTCGGGTCGGGA
CTGTCTTCTGTATCCCGTGTGACGTGTTCAGGTGTATTGGCAAAGTGACG
ACCAGCCCAAGGAGCTGAACTTTTTCAGCATTTCCTCCGACGGCCGGGTG
GCCAGTTGGGTCATGTCCAAGAACGAGCTTAAAATGGAGCCGGTCATGCA
GCTCAAACTCGTCAACACTATCAAGGTTAGCGATGGGATCGTCCACTATT
GTACCCCTACCCAGATGAGTACTTTCGCGTATATTCAGATTTTCTGTACT
GTTTGTGCTCGATTGTCTCTTCACGCTTGATCAACGTTGAATTTAATCAG
ATGCTCCTCATCAAGCGGTGACCAGGCGTGTAATCCACTTTCAACCCTGG
CCACCTTCTCTCCACATGGTGGCATGCTTTTCCTATTGCGTATGTGGTGT
ACCTCTGACGATCGTCATACGTCTGGGCGTGTGCTTGTAACGGCAGGACG
ACCCGGAGGAGACCTCTCTCTCCGGGCTGGCTGGGGGCTGCTGCTTCGAC
TTCAACCGGCACAGCGAGCACCTCTTCCTCGTGGGCACCGAGGAAGGGAA
GATCCACAAGTGCTCAAAGGCGTACAGCGGGCAGTATCTCGAGACGTACG
AGGGGCACAACATGGCCGTCTACACGCTCAGGTTCGCAGAAAGGAGGGGA
GAAGGATAG back to topCoding sequence (CDS) from alignment at Scaffold_94:37208..39766+ >EsuBft740_5a-0001 ID=EsuBft740_5a-0001|Name=EsuBft740_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=918bp|location=Sequence derived from alignment at Scaffold_94:37208..39766+ (Ectocarpus subulatus male Bft15b) ATGTTCGAACGCCACGCAGAGGCCGCCGATGATGGGGCGGGCGGAGGGGG CCGGAACGAGGACGACATGGTTCACAGCGCCAAGATGGGAGGTGCCCTCA AGATTCTGGAGCGGATGGTAAACCAGAACGCGGAGGACGAGATCTTCCAA GACTTCAAGTACTGGGAGGACGCATCGGATCATTTCCGTGAGGGCGAGGG ATCTTTGCTCCCCCTGTGGCGCTTCAGCACGGACAGGACCAAGAGGAAGC AGGTGACGGCCCTAGCGTGGAACCCGCAGTACCCTGATCTGTTCGCGGCA GCCTACGGCAGCTACGACTTCATGCGCCAGGGCAGCGGGATGGTGTGTTG CTTCAGCTTGAAAAACACCAGCCACCCGGAGTACACCTTCGGCACCGAGA GCGGGGTTATGTGCCTCGACTTCCACCCGGTGCACAACTCCTTGCTGGCG GTTGGCTGCCACGACGGCACCGTCATGGTTTTCGACGTCAGACACAAAGC GAACCGCCCCATCTACTCCTCTAGCATCAAGACGGGCAAGCACACGGACC CCGTGTGGCAGGTGTATTGGCAAAGTGACGACCAGCCCAAGGAGCTGAAC TTTTTCAGCATTTCCTCCGACGGCCGGGTGGCCAGTTGGGTCATGTCCAA GAACGAGCTTAAAATGGAGCCGGTCATGCAGCTCAAACTCGTCAACACTA TCAAGGACGACCCGGAGGAGACCTCTCTCTCCGGGCTGGCTGGGGGCTGC TGCTTCGACTTCAACCGGCACAGCGAGCACCTCTTCCTCGTGGGCACCGA GGAAGGGAAGATCCACAAGTGCTCAAAGGCGTACAGCGGGCAGTATCTCG AGACGTACGAGGGGCACAACATGGCCGTCTACACGCTCAGGTTCGCAGAA AGGAGGGGAGAAGGATAG back to top
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